Divergent population structure and climate associations of a chromosomal inversion polymorphism across the Mimulus guttatus species complex

Chromosomal rearrangement polymorphisms are common and increasingly found to be associated with adaptive ecological divergence and speciation. Rearrangements, such as inversions, reduce recombination in heterozygous individuals and thus can protect favourable allelic combinations at linked loci, facilitating their spread in the presence of gene flow. Recently, we identified a chromosomal inversion polymorphism that contributes to ecological adaptation and reproductive isolation between annual and perennial ecotypes of the yellow monkeyflower, Mimulus guttatus. Here we evaluate the population genetic structure of this inverted region in comparison with the collinear regions of the genome across the M. guttatus species complex. We tested whether annual and perennial M. guttatus exhibit different patterns of divergence for loci in the inverted and noninverted regions of the genome. We then evaluated whether there are contrasting climate associations with these genomic regions through redundancy analysis. We found that the inversion exhibits broadly different patterns of divergence among annual and perennial M. guttatus and is associated with environmental variation across population accessions. This study is the first widespread population genetic survey of the diversity of the M. guttatus species complex. Our findings contribute to a greater understanding of morphological, ecological, and genetic evolutionary divergence across this highly diverse group of closely related ecotypes and species. Finally, understanding species relationships among M. guttatus sp. has hitherto been stymied by accumulated evidence of substantial gene flow among populations as well as designated species. Nevertheless, our results shed light on these relationships and provide insight into adaptation in life history traits within the complex.     

Digest: Linking coordinated shifts in plant resource allocation to a chromosomal inversion*

Local adaptation in plants often requires coordinated shifts among resources. Lowry et al. provide evidence for physiological and genomic mechanisms underpinning adaptive shifts in yellow monkeyflower (Mimulus guttatus), such as the transition between annual and perennial life histories. In M. guttatus, differential activity of gibberellins, governed partially by a chromosomal inversion, is responsible for shifts between growth, reproduction, and herbivore defense (secondary compound production).     

A Widespread Chromosomal Inversion Polymorphism Contributes to a Major Life-History Transition,Local Adaptation,and Reproductive Isolation

The role of chromosomal inversions in adaptation and speciation is controversial. Historically, inversions were thought to contribute to these processes either by directly causing hybrid sterility or by facilitating the maintenance of co-adapted gene complexes. Because inversions suppress recombination when heterozygous, a recently proposed local adaptation mechanism predicts that they will spread if they capture alleles at multiple loci involved in divergent adaptation to contrasting environments. Many empirical studies have found inversion polymorphisms linked to putatively adaptive phenotypes or distributed along environmental clines. However, direct involvement of an inversion in local adaptation and consequent ecological reproductive isolation has not to our knowledge been demonstrated in nature. In this study, we discovered that a chromosomal inversion polymorphism is geographically widespread, and we test the extent to which it contributes to adaptation and reproductive isolation under natural field conditions. Replicated crosses between the prezygotically reproductively isolated annual and perennial ecotypes of the yellow monkeyflower, Mimulus guttatus, revealed that alternative chromosomal inversion arrangements are associated with life-history divergence over thousands of kilometers across North America. The inversion polymorphism affected adaptive flowering time divergence and other morphological traits in all replicated crosses between four pairs of annual and perennial populations. To determine if the inversion contributes to adaptation and reproductive isolation in natural populations, we conducted a novel reciprocal transplant experiment involving outbred lines, where alternative arrangements of the inversion were reciprocally introgressed into the genetic backgrounds of each ecotype. Our results demonstrate for the first time in nature the contribution of an inversion to adaptation, an annual/perennial life-history shift, and multiple reproductive isolating barriers. These results are consistent with the local adaptation mechanism being responsible for the distribution of the two inversion arrangements across the geographic range of M. guttatus and that locally adaptive inversion effects contribute directly to reproductive isolation. Such a mechanism may be partially responsible for the observation that closely related species often differ by multiple chromosomal rearrangements.     

Adaptive divergence in the monkey flower Mimulus guttatus is maintained by a chromosomal inversion

Organisms exhibit an incredible diversity of life history strategies as adaptive responses to environmental variation. The establishment of novel life history strategies involves multilocus polymorphisms, which will be challenging to establish in the face of gene flow and recombination. Theory predicts that adaptive allelic combinations may be maintained and spread if they occur in genomic regions of reduced recombination, such as chromosomal inversion polymorphisms, yet empirical support for this prediction is lacking. Here, we use genomic data to investigate the evolution of divergent adaptive ecotypes of the yellow monkey flower Mimulus guttatus. We show that a large chromosomal inversion polymorphism is the major region of divergence between geographically widespread annual and perennial ecotypes. In contrast, ～40,000 single nucleotide polymorphisms in collinear regions of the genome show no signal of life history, revealing genomic patterns of diversity have been shaped by localized homogenizing gene flow and large‐scale Pleistocene range expansion. Our results provide evidence for an inversion capturing and protecting loci involved in local adaptation, while also explaining how adaptive divergence can occur with gene flow.     

Dissecting the role of a large chromosomal inversion in life history divergence throughout the Mimulus guttatus species complex

Chromosomal inversions can play an important role in adaptation, but the mechanism of their action in many natural populations remains unclear. An inversion could suppress recombination between locally beneficial alleles, thereby preventing maladaptive reshuffling with less‐fit, migrant alleles. The recombination suppression hypothesis has gained much theoretical support but empirical tests are lacking. Here, we evaluated the evolutionary history and phenotypic effects of a chromosomal inversion which differentiates annual and perennial forms of Mimulus guttatus. We found that perennials likely possess the derived orientation of the inversion. In addition, this perennial orientation occurs in a second perennial species, M. decorus, where it is strongly associated with life history differences between co‐occurring M. decorus and annual M. guttatus. One prediction of the recombination suppression hypothesis is that loci contributing to local adaptation will predate the inversion. To test whether the loci influencing perenniality pre‐date this inversion, we mapped QTLs for life history traits that differ between annual M. guttatus and a more distantly related, collinear perennial species, M. tilingii. Consistent with the recombination suppression hypothesis, we found that this region is associated with life history in the absence of the inversion, and this association can be broken into at least two QTLs. However, the absolute phenotypic effect of the LG8 inversion region on life history is weaker in M. tilingii than in perennials which possess the inversion. Thus, while we find support for the recombination suppression hypothesis, the contribution of this inversion to life history divergence in this group is likely complex.     

Adaptive genetic differentiation in life-history traits between populations of <Emphasis Type="Italic">Mimulus guttatus</Emphasis> with annual and perennial life-cycles

The optimal allocation to sexual and vegetative reproduction as well as the optimal values of other life-history characteristics such as phenology, growth and mating system are likely to depend on the life-cycle of the organism. I tested whether plants of Mimulus guttatus originating from temporarily wet populations where the species has an enforced annual life-cycle have higher allocation to sexual reproduction, lower allocation to vegetative reproduction, more rapid phenology, faster growth, and floral traits associated with a self-fertilizing mating system than plants from permanently wet populations where the species has a perennial life-cycle. I grew a total of 1377 plants originating from three populations with an annual life-cycle and 11 populations with a perennial life-cycle in a greenhouse under permanently and temporarily wet conditions. Plants of M. guttatus in permanently wet conditions had significantly more vegetative reproduction and tended to have a faster growth than plants in the temporarily wet conditions, indicating plasticity in these life-history traits. Plants from populations with an annual life-cycle invested significantly more in sexual reproduction and significantly less in vegetative reproduction than the ones from populations with a perennial life-cycle. Moreover, this study showed that plants originating from populations with an annual life-cycle have a significantly faster development and floral traits associated with autonomous self-fertilization. In conclusion, this study suggests that there has been adaptive evolution of life history traits of M. guttatus in response to natural watering conditions that determine the life span of the species.     

The extent and genetic basis of phenotypic divergence in life history traits in Mimulus guttatus

Differential natural selection acting on populations in contrasting environments often results in adaptive divergence in multivariate phenotypes. Multivariate trait divergence across populations could be caused by selection on pleiotropic alleles or through many independent loci with trait‐specific effects. Here, we assess patterns of association between a suite of traits contributing to life history divergence in the common monkey flower, Mimulus guttatus, and examine the genetic architecture underlying these correlations. A common garden survey of 74 populations representing annual and perennial strategies from across the native range revealed strong correlations between vegetative and reproductive traits. To determine whether these multitrait patterns arise from pleiotropic or independent loci, we mapped QTLs using an approach combining high‐throughput sequencing with bulk segregant analysis on a cross between populations with divergent life histories. We find extensive pleiotropy for QTLs related to flowering time and stolon production, a key feature of the perennial strategy. Candidate genes related to axillary meristem development colocalize with the QTLs in a manner consistent with either pleiotropic or independent QTL effects. Further, these results are analogous to previous work showing pleiotropy‐mediated genetic correlations within a single population of M. guttatus experiencing heterogeneous selection. Our findings of strong multivariate trait associations and pleiotropic QTLs suggest that patterns of genetic variation may determine the trajectory of adaptive divergence.     

Is local adaptation in Mimulus guttatus caused by trade‐offs at individual loci?

Local adaptation is considered to be the result of fitness trade‐offs for particular phenotypes across different habitats. However, it is unclear whether such phenotypic trade‐offs exist at the level of individual genetic loci. Local adaptation could arise from trade‐offs of alternative alleles at individual loci or by complementary sets of loci with different fitness effects of alleles in one habitat but selective neutrality in the alternative habitat. To evaluate the genome‐wide basis of local adaptation, we performed a field‐based quantitative trait locus (QTL) mapping experiment on recombinant inbred lines (RILs) created from coastal perennial and inland annual races of the yellow monkeyflower (Mimulus guttatus) grown reciprocally in native parental habitats. Overall, we detected 19 QTLs affecting one or more of 16 traits measured in two environments, most of small effect. We identified 15 additional QTL effects at two previously identified candidate QTLs [DIV ERGENCE (DIV)]. Significant QTL by environment interactions were detected at the DIV loci, which was largely attributable to genotypic differences at a single field site. We found no detectable evidence for trade‐offs for any one component of fitness, although DIV2 showed a trade‐off involving different fitness traits between sites, suggesting that local adaptation is largely controlled by non‐overlapping loci. This is surprising for an outcrosser, implying that reduced gene flow prevents the evolution of individuals adapted to multiple environments. We also determined that native genotypes were not uniformly adaptive, possibly reflecting fixed mutational load in one of the populations.     

The association of feeding behaviour with the resistance and tolerance to parasites in recently diverged sticklebacks

Divergent natural selection regimes can contribute to adaptive population divergence, but can be sensitive to human‐mediated environmental change. Nutrient loading of aquatic ecosystems, for example, might modify selection pressures by altering the abundance and distribution of resources and the prevalence and infectivity of parasites. Here, we used a mesocosm experiment to test for interactive effects of nutrient loading and parasitism on host condition and feeding ecology. Specifically, we investigated whether the common fish parasite Gyrodactylus sp. differentially affected recently diverged lake and stream ecotypes of three‐spined stickleback (Gasterosteus aculeatus). We found that the stream ecotype had a higher resistance to Gyrodactylus sp. infections than the lake ecotype, and that both ecotypes experienced a cost of parasitism, indicated by negative relationships between parasite load and both stomach fullness and body condition. Overall, our results suggest that in the early stages of adaptive population divergence of hosts, parasites can affect host resistance, body condition and diet.     

Natural selection drives leaf divergence in experimental populations of Senecio lautus under natural conditions

相似文献   

Disturbance-mediated trophic interactions and plant performance

Disturbances, such as flooding, play important roles in determining community structure. Most studies of disturbances focus on the direct effects and, hence, the indirect effects of disturbances are poorly understood. Within terrestrial riparian areas, annual flooding leads to differences in the arthropod community as compared to non-flooded areas. In turn, these differences are likely to alter the survival, growth, and reproduction of plant species via an indirect effect of flooding (i.e., changes in herbivory patterns). To test for such effects, an experiment was conducted wherein arthropod predators and herbivores were excluded from plots in flooded and non-flooded areas and the impact on a common riparian plant, Mimulus guttatus was examined. In general, the direct effect of flooding on M. guttatus was positive. The indirect effects, however, significantly decreased plant survival for both years of the experiment, regardless of predator presence, because of an increased exposure to grasshoppers, the most abundant herbivore in the non-flooded sites. Leafhoppers, which were more abundant in the flooded sites, had much weaker and varying effects. During 2000, when the leafhopper herbivory was high, arthropod predators did not significantly reduce damage to plants. In 2001, the mean herbivory damage was lower and predators were able to significantly reduce overall leafhopper damage. The effects of predators on leafhoppers, however, did not increase plant survival, final weight, or the reproduction potential and, thus, did not initiate a species-level trophic cascade. Overall, it was the differences in the herbivore community that led to a significant decrease in plant survival. While flooding certainly alters riparian plant survival through direct abiotic effects, it also indirectly affects riparian plants by changing the arthropod community, in particular herbivores, and hence trophic interactions.     

不同生态型芦苇种群对盐胁迫的生长和光合特性

土壤盐渍化是影响我国土壤利用效率的主要因素之一,芦苇是改良土壤盐渍化的良好实验材料,但芦苇有着多种的生态型,比较各生态型芦苇的耐盐差异成为亟待解决的问题。通过设置淡水(0.00%)与加盐(质量浓度2.00%)处理控制实验,测量芦苇的生长指标和光合指标,比较河口型芦苇与内陆型芦苇耐盐性,寻找合适生态型的芦苇作为改良土壤盐渍化的生物材料。在实验中,与淡水条件相比,加盐(2.00%)处理条件下,河口型芦苇和内陆型芦苇的株高(height)、蒸腾速率(E)均显著性下降,但是两种生态型的芦苇的水分利用效率(WUE)明显提高;河口型的芦苇相对生长速率(RGR)和气孔导度(Gs)都明显高于内陆型芦苇。在淡水环境中,河口型芦苇的相对生长速率(RGR)和净光合速率(A)都显著性地高于内陆型芦苇。结果表明两种生态型的芦苇在进化过程中存在一定程度上的分化,盐胁迫会抑制两种芦苇的生长,两种生态型芦苇的相对生长速率和气孔导度在盐胁迫下出现明显地差异,表明两种生态型的芦苇对盐度的响应机制有所差异。相比于内陆型芦苇,河口型芦苇有着更强的耐盐性,内陆型及河口型芦苇的表型性状差异主要是由于其原生境的差异所决定的。     

Do Tree Canopies Enhance Perennial Grass Restoration in California Oak Savannas?

Scattered trees in grass‐dominated ecosystems often act as islands of fertility with important influences on community structure. Despite the potential for these islands to be useful in restoring degraded rangelands, they can also serve as sites for the establishment of fast growing non‐native species. In California oak savannas, native perennial grasses are rare beneath isolated oaks and non‐native annual grasses dominate. To understand the mechanisms generating this pattern, and the potential for restoration of native grasses under oaks, we asked: what are the effects of the tree understory environment, the abundance of a dominant non‐native annual grass (Bromus diandrus), and soils beneath the trees on survival, growth, and reproduction of native perennial grass seedlings? We found oak canopies had a strong positive effect on survival of Stipa pulchra and Poa secunda. Growth and reproduction was enhanced by the canopy for Poa but negatively impacted for Stipa. We also found that Bromus suppressed growth and reproduction in Stipa and Poa, although less so for Stipa. These results suggest the oak understory may enhance survival of restored native perennial grass seedlings. The presence of exotic grasses can also suppress growth of native grasses, although only weakly for Stipa. The current limitation of native grasses to outside the canopy edge is potentially the result of interference from annual grasses under oaks, especially for short‐statured grasses like Poa. Therefore, control of non‐native annual grasses under tree canopies will enhance the establishment of S. pulchra and P. secunda when planted in California oak savannas.     

Transgenerational effects alter plant defence and resistance in nature

Trichomes, or leaf hairs, are epidermal extensions that take a variety of forms and perform many functions in plants, including herbivore defence. In this study, I document genetically determined variation, within‐generation plasticity, and a direct role of trichomes in herbivore defence for Mimulus guttatus. After establishing the relationship between trichomes and herbivory, I test for transgenerational effects of wounding on trichome density and herbivore resistance. Patterns of interannual variation in herbivore density and the high cost of plant defence makes plant–herbivore interactions a system in which transgenerational phenotypic plasticity (TPP) is apt to evolve. Here, I demonstrate that parental damage alters offspring trichome density and herbivore resistance in nature. Moreover, this response varies between populations. This is among the first studies to demonstrate that TPP contributes to variation in nature, and also suggests that selection can modify TPP in response to local conditions.     

Physical leaf defenses – altered by Zea life‐history evolution,domestication, and breeding – mediate oviposition preference of a specialist leafhopper

Plant anti‐herbivore defenses are known to be affected by life‐history evolution, as well as by domestication and breeding in the case of crop species. A suite of plants from the maize genus Zea (Poaceae) and the specialist herbivore Dalbulus maidis (DeLong & Wolcott) (Hemiptera: Cicadellidae) were used to test the hypothesis that anti‐herbivore defenses are affected by plant life‐history evolution and human intervention through domestication and breeding for high yield. The suite of plants included a maize (Zea mays ssp. mays L.) commercial hybrid, a maize landrace, two populations of the annual Balsas teosinte (Z. mays ssp. parviglumis Iltis & Doebley), and perennial teosinte (Z. diploperennis Iltis, Doebley & Guzman). Leaf toughness, pubescence, and oviposition preference were compared among the suite of host plants looking for effects of transitions in life history (i.e., from perennial to annual life cycle), domestication (i.e., from wild annual to domesticated annual), and breeding (i.e., from landrace to hybrid maize) on defense against D. maidis. Results on leaf toughness suggested that the life‐history and domestication transitions weakened the plant's resistance to penetration by the mouthparts and ovipositor of D. maidis, whereas results on pubescence suggested that this putative defense was strengthened with the breeding transition, contrary to expectations. Results on oviposition preference of D. maidis coincided with the expectation that life‐history and domestication transitions would lead to preference for Balsas teosinte over perennial teosinte, and of landrace maize over Balsas teosinte. Also, a negative correlation suggested that oviposition preference is significantly influenced by leaf toughness. Overall, the results suggested that Zea defenses against the specialist herbivore D. maidis were variably affected by plant life‐history evolution, domestication, and breeding, and that chemical defense may play a role in Zea defense against D. maidis because leaf toughness and pubescence only partially explained its host preferences.     

Ecotypic differentiation determines the outcome of positive interactions in a dryland annual plant species

Positive interactions among plants have rarely been investigated with respect to their evolutionary consequences and vice versa. The outcome of facilitative interactions depends on the competitive ability and stress tolerance of the species. We tested whether this also applies to populations of conspecifics that are locally adapted to different environments and thereby differ in these traits. We hypothesised that ecotypes from less stressful environments experience a greater effect of facilitation when grown in stressful environments compared to populations adapted to these conditions.Seeds of two ecotypes of the annual grass species, Brachypodium distachyon, were collected from Mediterranean and arid origins and transplanted at an arid environment within the species’ distribution range. To examine the effect of biotic interactions on these ecotypes, we transplanted the individuals with and without the presence of the shrub Gymnocarpos decander (underneath or away from the shrub), and with and without the presence of annual vegetation (removal experiment). We examined the effect of these interactions on the two B. distachyon ecotypes by comparison of emergence success, biomass, and survival to reproduction.The presence of shrubs had a positive effect on all three variables in both ecotypes. Facilitation by shrubs enabled individuals from Mediterranean origin to grow and reproduce in arid conditions. Unlike the locals, they failed to survive to reproduction away from the shrubs, because of the markedly shorter growing season in open areas. The annual vegetation did not affect emergence or survival to reproduction in either ecotype; however, the positive effect of shrubs on biomass was reduced in the presence annual vegetation in the Mediterranean ecotype.This demonstrates that ecotypes adapted to arid conditions respond differently to these biotic interactions compared to Mediterranean populations. We argue that facilitation may have important evolutionary consequences by enabling maladapted ecotypes to invade and colonize stressful habitats.     

The association among herbivory tolerance,ploidy level,and herbivory pressure in <Emphasis Type="Italic">cardamine pratensis</Emphasis>

We tested whether differences in ploidy level and previous exposure to herbivory can affect plant tolerance to herbivory. We conducted a common garden experiment with 12 populations of two ploidy levels of the perennial herb Cardamine pratensis (five populations of tetraploid ssp. pratensis and seven populations of octoploid ssp. paludosa). Earlier studies have shown that attack rates by the main herbivore, the orange tip butterfly Anthocharis cardamines, are lower in populations of octoploids than in populations of tetraploids, and vary among populations. In the common garden experiment, a combination of natural and artificial damage significantly reduced seed and flower production. We measured tolerance based on four plant-performance metrics: survival, growth, seed production and clonal reproduction. For three of these measurements, tolerance of damage did not differ between ploidy levels. For clonal reproduction, the octoploids had a higher tolerance than the tetraploids, although they experience lower herbivore attack rates in natural populations. Populations from sites with high levels of herbivory had higher tolerance, measured by seed production, than populations with low levels of herbivory. We did not detect any significant costs of tolerance. We conclude that high intensity of herbivory has selected for high tolerance measured by seed production in C. pratensis.     

Resource allocation,demography and the radiation of life histories in rough periwinkles (Gastopoda)

Applicability of life-history theory to higher levels of comparison (from populations, through ecotypes to sibling species) was investigated in rough periwinkles, whose life histories have diversified since colonization of the North Atlantic by an oviparous ancestor in the upper Pliocene. Comparisons were made among populations of the ovoviviparous Littorina saxatilis, between L. saxatilis and its ecotype, L. neglecta (with an annual life history) and between the sibling species L. saxatilis and L. arcana, the latter of which retains the ancestral oviparity. Resource-allocation priority, reproductive effort and related trade offs were compared between the ecotypes and the sibling species by measuring changes in flesh mass and reproductive output in snails subjected to different degrees of food deprivation, and by measuring mortality rate of snails stressed by desiccation, high temperature and low salinity. Body size had a marked effect on all parameters, but after statistically removing this effect there remained no significant differences in allocation among ecotypes or species. Published demographical data were reviewed for correlations between habitat, mortality regime and life-history characteristics. Populations of L. saxatilis varied principally in size at birth and in adult size. Theoretical premises based on density-dependent versus density-independent mortality regimes could not explain these trends. Instead, size at birth may have reflected the mechanical, physiological or biological nature of mortality risk rather than its density dependence or independence. Adult size reflected the available sizes of crevices used for shelter and perhaps also the quality of feeding conditions. Radiation of life histories within the rough periwinkles is interpreted as a series of adaptations to a progressively wider range of habitats. The transition from oviparity to ovoviviparity allows colonization of estuaries, saltmarshes and pebble beaches too hazardous for naked egg masses. The transition from a perennial to an annual life history in barnacle ecotypes follows from allometric re-scaling of morphological and physiological parameters, enabling reproduction and brooding to occur at the small body size necessary for life within empty barnacle tests. This suite of adaptations allows exploitation of a relatively benign microhabitat that occurs almost ubiquitously on exposed rocky shores of the temperate North Atlantic. The persistence of oviparous forms, presumably in the face of competition from sympatric ovoviviparous forms, remains unexplained.     

Relationship between photosynthetic rate,water use and leaf structure in desert annual and perennial forbs differing in their growth

Specific leaf area (SLA) is a key trait to screen plants for ecological performance and productivity; however, the relationship between SLA and photosynthesis is not always up-scalable to growth when comparing multiple species with different life cycles. We explored leaf anatomy in annual and perennial species of Physaria, and related it to photosynthesis and water loss. The annual Physaria gracilis had higher SLA, thinner leaves, and lower investment in protective tissues, than perennial P. mendocina. Physaria angustifolia (annual), and P. pinetorum (perennial) showed intermediate values. Both perennials had a thicker palisade and high photosynthesis, relative to annuals. The larger leaf veins of perennials should allow high water availability to the mesophyll. The thicker palisade should determine high resistance to water flow and help explain their high water-use efficiency. These leaf functions reflect the construction of long-lived leaves that efficiently use resources under environmental limitations of arid environments.