Germinating pigeonpea (Cajanus cajan) seeds secrete factor(s) having antiethylene-like effects

Germinating pigeonpea seeds were found to release factor(s), which dramatically altered the growth pattern of rice seedlings. This included an increased sensitivity of roots to gravity, an increase in seminal root length, and increased density of branch roots on the seminal root and suppression of root hair formation. Furthermore, the known characteristic responses of rice to ethylene (namely, coleoptile growth promotion and induction of senescence) were inhibited by the presence of these factor(s). This altered growth pattern of rice seedlings was similar to that brought about by the ethylene-antagonist, silver nitrate. Further, the change in growth pattern in rice was specifically reversed by ethrel. In addition, in wild-type Arabidopsis thaliana these factors suppressed formation of root hair, the development of which is known to be promoted by ethylene. In contrast, in a mutant A. thaliana which shows constitutive ethylene response ( ctr1-1 ), the factors failed to inhibit root hair formation. These observations indicated that germinating pigeonpea seeds secrete factor(s), which have antiethylene-like effects.     

Synthesis of oligo(poly(ethylene glycol) fumarate)

This protocol describes the synthesis of oligo(poly(ethylene glycol) fumarate) (OPF; 1-35 kDa; a polymer useful for tissue engineering applications) by a one-pot reaction of poly(ethylene glycol) (PEG) and fumaryl chloride. The procedure involves three parts: dichloromethane and PEG are first dried; the reaction step follows, in which fumaryl chloride and triethylamine are added dropwise to a solution of PEG in dichloromethane; and finally, the product solution is filtered to remove by-product salt, and the OPF product is twice crystallized, washed and dried under vacuum. The reaction is affected by the molecular weight of PEG and reactant molar ratio. The OPF product is cross-linked by radical polymerization by either a thermally induced or ultraviolet-induced radical initiator, and the physical properties of the OPF oligomer and resulting cross-linked hydrogel are easily tailored by varying PEG molecular weight. OPF hydrogels are injectable, they polymerize in situ and they undergo biodegradation by hydrolysis of ester bonds. The expected time required to complete this protocol is 6 d.     

Isolation of apolipoprotein(a) from lipoprotein(a)

An easy method was developed for the rapid and selective isolation of apo(a) from human plasma Lp(a). This procedure was applied to a "low density" Lp(a) subspecies (usually found in the density interval 1.050 to 1.070 g/ml) from a single individual whose apo(a) was of a size smaller than apoB-100. After reduction with 0.01 M dithiothreitol, apo(a) was separated from the Lp(a) particle by rate zonal centrifugation on a 7.5-30% NaBr density gradient. Two completely water-soluble products were recovered: apo(a), which contained less than 1% each of phospholipid and cholesterol, remained at the bottom of the gradient, and a lipid-rich floating LDL-like particle which contained apoB but not apo(a) and which we referred to as Lp(a-). The separation of these two components was also achieved by subjecting reduced Lp(a) to electrophoresis on 2.5-16% polyacrylamide gradient gels. However, dissociation of reduced Lp(a) could not be achieved by gel filtration in either low or high salt solutions. These observations indicate that apo(a) is associated to Lp(a) by non-covalent interactions in addition to its disulfide linkage to apoB. The latter is sensitive to chemical reduction whereas the former are broken through the action of a gravitational or electrical field.     

Ficus (Moraceae) as part of Agrarian systems in the bamileke region (Cameroon)

This paper considers the altitudinal zonation ofFicus on the southern slopes of the Bamboutos Mountains, Cameroon, and attempts to understand how these species have been appropriated by the Bamileke people. Five commonly used species ofFicus are propagated using pole cuttings. This genus contains important species in the farming system which have specific growth and development requirements. They mark the land ownership boundaries, as symbolic trees which give shelter to the lineage gods, and as important parts offence structure. They are incorporated into and contribute to the management of the territory. The landscape is criss-crossed with hedges which allow the integration of cropping and breeding activities. Their rapid growth also constitutes an important source of firewood and cuttings. The Bamileke’s long use of and interest in theFicus genus is demonstrated by the variety of indigenous names given to its species. The study of these names has provided the structure for guiding this ethnobotanic research.     

The seminal receptacle and sperm storage in Cochlostoma montanum (Issel) (Gastropoda: Prosobranchia)

Females of Cochlostoma montanum (Prosobranchia, Cochlostomatidae) have a seminal receptacle which is not a separate diverticulum of the oviduct. The seminal receptacle derives from a differentiated portion of the renal oviduct which has an inner wall composed of only one layer of cells. These cells are of two different types, both actively involved in secretory activity. One type is represented by goblet cells filled with large vesicles containing an electron-dense, homogeneous, and partially paracrystalline material. This material is expelled into the lumen through macro-apocrine or holocrine types of secretion. The other type is represented by ciliated cells rich in small vesicles containing granular material. Probably neither kind of secretion has a nutritive function; rather they serve as matrix for spermatozoa that immobilize them and prevent their expulsion from the receptacular portion of the oviduct. Spermatozoa are inserted in invaginations of the apex of both these epithelial cells. The sperm plasma membrane covering the acrosome forms long digitations which expand toward the corresponding invaginations of the receptaculum cells. This type of adhesion is a novelty for Mollusca and resembles that in seminal receptacles of some Annelida.     

Mating of Xenos vesparum (Rossi) (Strepsiptera, Insecta) revisited

The controversial mating of the strepsipteran Xenos vesparum was studied to investigate the possible sperm routes for fertilization. The female, which is a neotenic permanent endoparasite of Polistes wasps, extrudes only its anterior region, the "cephalothorax," from the host abdomen. This region has an opening where both mating and larval escape occur. Observations with scanning and transmission electron microscopy revealed spermatozoa not only in the hemocoel, but also in the "ventral canal" (an extragenital duct peculiar to strepsipteran females) and in the "genital ducts" (ectodermal invaginations connecting the ventral canal to the hemocoel) of recently mated females. Xenos vesparum spermatozoa can reach the oocytes either through the hemocoel as a result of a hypodermic insemination, or by moving along the extragenital ducts, which are later used by first instar larvae to escape. The hypothesis of hypodermic insemination is reconsidered in the light of behavioral and ultrastructural evidence.     

Intermolecular V(D)J recombination

V(D)J recombination plays a prominent role in the generation of the antigen receptor repertoires of B and T lymphocytes. It is also likely to be involved in the formation of chromosomal translocations, some of which may result from interchromosomal recombination. We have investigated the potential of the V(D)J recombination machinery to perform intermolecular recombination between two plasmids, either unlinked or linked by catenation. In either case, recombination occurs in trans to yield signal and coding joints, and the results do not support the existence of a mechanistic block to the formation of coding joints in trans. Instead, we observe that linearization of the substrate, which does not alter the cis or trans status of the recombination signals, causes a specific and dramatic reduction in coding joint formation. This unexpected result leads us to propose a "release and recapture" model for V(D)J recombination in which coding ends are frequently released from the postcleavage complex and the efficiency of coding joint formation is influenced by the efficiency with which such ends are recaptured by the complex. This implies the existence of mechanisms, operative during recombination of chromosomal substrates, that act to prevent coding end release or to facilitate coding end recapture.     

(Pro)Insulin processing

Insulin, the major secreted product of the β-cells of the islets of Langerhans, is initially synthesized as a precursor (preproinsulin), from which the mature hormone is excised by a series of proteolytic cleavages. This review provides a personal narrative of some of the key research projects leading to the identification of the central processing enzymes as proprotein convertase 1, proprotein convertase 2, and carboxypeptidase E. It also discusses the central roles of the intragranular environment and chaperone-like proteins in modulating processing activity.     

Lycophytes from the Middle Triassic (Anisian) locality Kühwiesenkopf (Monte Prà della Vacca) in the Dolomites (northern Italy)

Abstract: Generally, lycophytes are not well represented in Anisian floras. Nonetheless, four different genera, each with one species, have been distinguished in the Anisian flora from Kühwiesenkopf (Monte Prà della Vacca), Italy. They were well preserved and yielded leaf cuticles in all four taxa and in situ spores in two of them. Lycopia dezanchei gen. et sp. nov. is the most common form; it is characterized by a dichotomising creeping prostrate rhizome (representing the primary shoot axis) from which arise aerial axes, apically bifurcated and covered with bundles of long leaves. This taxon cannot be attributed to any of the lycophyte orders, but most resembles Lycopodiales. Two representatives of the Isoetales have been found, of which Isoetites brandneri sp. nov. is abundant. This species is characterized by a short stem, which is unusual for this genus. In situ immature microspores and megaspores were found in some specimens. Lepacyclotes bechstaedtii sp. nov. has a quadrilobe corm with fertile scales inserted in whorls or slightly helicoidally. Short sterile leaves arise distally from the corm in some specimens. Selaginellales are very rare in the flora; Selaginellites leonardii sp. nov. is represented by a strobilus that yielded both micro‐ and megaspores. Some sterile fragments have been found associated, but never in organic connection.     

Multizooidal Budding in Parasmittina trispinosa (Johnston) (Bryozoa,Cheilostomata)

Two principally different wall types occur in the bryozoan colony: Exterior walls delimiting the super-individual, the colony, against its surroundings and interior walls dividing the body cavity of the colony thus defined into units which develop into sub-individuals, the zooids. In the gymnolaemate bryozoans generally, whether uniserial or multiserial, the longitudinal zooid walls are exterior, the transverse (proximal and distal) zooid walls interior ones. The radiating zooid rows grow apically to form “tubes” each surrounded by exterior walls but subdivided by interior (transverse) walls. The stenolaemate bryozoans show a contrasting mode of growth in which the colony swells in the distal direction to form one confluent cavity surrounded by an exterior wall but internally subdivided into zooids by interior walls. In the otherwise typical gymnolaemate Parasmittina trispinosa the growing edge is composed of a series of “giant buds” each surrounded by exterior walls on its lateral, frontal, basal and distal sides and forming an undifferentiated chamber usually 2–3 times as broad and 3 or more times as long as the final zooid. Its lumen is subdivided by interior walls into zooids 2–3, occasionally 4, in breadth. This type of zooid formation is therefore similar to the “common bud” or, better-named, “multizooidal budding” characteristic of the stenoleamates but has certainly evolved independently as a special modification of the usual gymnolaemate budding.     

The synthesis and characterisation of the trichloronitrosyl(acetylacetonato)technetium(II) anion, a novel technetium(II) complex

The reaction of [TcNOCL₄]⁻ with acetylacetone was found to give the complex [TcNO(acac)Cl₃]⁻. This complex has been fully characterised by X-ray crystallography and FAB⁻ Mass spectrometry. The former shows that one of the oxygens of the acac is trans to the nirtosyl which is essentially linear, although disorder in the crystal prohibits accurate measurements of the bond angle. The latter shows facile loss of a single chlorine which suggests that ligand exchange of this may be facile. The ESR spectrum at room temperature shows the expected 10 lines due to splitting by the technetium. At −196°C the spectrum may be modelled as having three g values,g_x = 2.0107,g_y = 2.02225 and g_z = 1.9460.     

Pliocene Ilyocyprididae (Ostracoda) from the Ebro Basin (N. Spain)

A revision of the Pliocene representatives of the Ilyocyprididae genera Ilyocypris Brady and Norman, 1889, and Qinghaicypris Huang, 1979, obtained from lacustrine sediments of the Villarroya section (La Rioja, N. Spain) is presented in this work. Based on carapace morphology and morphometrics, the occurrence in Europe of the genus Qinghaicypris is discussed. This genus is represented in this material by a new species, Qinghaicypris riojensis nov. sp., which is described herein. The occurrence of Ilyocypris and Qinghaicypris within the lacustrine series of Villarroya is analysed in relation to the hydrological evolution of the water bodies, which were very likely climatically driven. Palaeoecological as well as palaeobiogeographical interest of those genera is pointed out in the context of the aquatorium that spread over big areas of Europe during the Pliocene.     

Poly(dG)-poly(dC) DNA appears shorter than poly(dA)-poly(dT) and possibly adopts an A-related conformation on a mica surface under ambient conditions

Three types of DNA: approximately 2700 bp polydeoxyguanylic olydeoxycytidylic acid [poly(dG)-poly(dC)], approximately 2700 bp polydeoxyadenylic polydeoxythymidylic acid [poly(dA)-poly(dT)] and 2686 bp linear plasmid pUC19 were deposited on a mica surface and imaged by atomic force microscopy. Contour length measurements show that the average length of poly(dG)-poly(dC) is approximately 30% shorter than that of poly(dA)-poly(dT) and the plasmid. This led us to suggest that individual poly(dG)-poly(dC) molecules are immobilized on mica under ambient conditions in a form which is likely related to the A-form of DNA in contrast to poly(dA)-poly(dT) and random sequence DNA which are immobilized in a form that is related to the DNA B-form.     

Sperm Bundles in the Seminal Vesicle of the Crematogaster victima (Smith) Adult Males (Hymenoptera: Formicidae)

This study establishes the presence of spermatodesm in the seminal vesicles of sexually mature males of Crematogaster victima (Smith). In this species, the spermatozoa are maintained together by an extracellular matrix in which the acrosomal regions are embedded. This characteristic has not yet been observed in any other Aculeata. However, the sperm morphology in this species is similar to that described for other ants. The spermatozoa measure on average 100 μm in length, and the number of sperm per bundle is up to 256. They are composed of a head formed by the acrosome and nucleus; this is followed by the flagellum, which is formed by the centriolar adjunct, an axoneme with a 9?+?9?+?2 microtubule pattern, two mitochondrial derivatives, and two accessory bodies. The acrosome is formed by the acrosomal vesicle and perforatorium. The nucleus is filled with compact chromatin with many areas of thick and non-compacted filaments. Both mitochondrial derivatives have the same shape and diameters. The presence of sperm bundles in sexually mature males differentiates C. victima from other ants; however, the similarities in the sperm ultrastructure support the monophyly of this insect group.     

Dissimilatory Fe(III) and Mn(IV) reduction.

The oxidation of organic matter coupled to the reduction of Fe(III) or Mn(IV) is one of the most important biogeochemical reactions in aquatic sediments, soils, and groundwater. This process, which may have been the first globally significant mechanism for the oxidation of organic matter to carbon dioxide, plays an important role in the oxidation of natural and contaminant organic compounds in a variety of environments and contributes to other phenomena of widespread significance such as the release of metals and nutrients into water supplies, the magnetization of sediments, and the corrosion of metal. Until recently, much of the Fe(III) and Mn(IV) reduction in sedimentary environments was considered to be the result of nonenzymatic processes. However, microorganisms which can effectively couple the oxidation of organic compounds to the reduction of Fe(III) or Mn(IV) have recently been discovered. With Fe(III) or Mn(IV) as the sole electron acceptor, these organisms can completely oxidize fatty acids, hydrogen, or a variety of monoaromatic compounds. This metabolism provides energy to support growth. Sugars and amino acids can be completely oxidized by the cooperative activity of fermentative microorganisms and hydrogen- and fatty-acid-oxidizing Fe(III) and Mn(IV) reducers. This provides a microbial mechanism for the oxidation of the complex assemblage of sedimentary organic matter in Fe(III)- or Mn(IV)-reducing environments. The available evidence indicates that this enzymatic reduction of Fe(III) or Mn(IV) accounts for most of the oxidation of organic matter coupled to reduction of Fe(III) and Mn(IV) in sedimentary environments. Little is known about the diversity and ecology of the microorganisms responsible for Fe(III) and Mn(IV) reduction, and only preliminary studies have been conducted on the physiology and biochemistry of this process.     

Structure and cellular dynamics of Deinococcus radiodurans single-stranded DNA (ssDNA)-binding protein (SSB)-DNA complexes

The single-stranded DNA (ssDNA)-binding protein from the radiation-resistant bacterium Deinococcus radiodurans (DrSSB) functions as a homodimer in which each monomer contains two oligonucleotide-binding (OB) domains. This arrangement is exceedingly rare among bacterial SSBs, which typically form homotetramers of single-OB domain subunits. To better understand how this unusual structure influences the DNA binding and biological functions of DrSSB in D. radiodurans radiation resistance, we have examined the structure of DrSSB in complex with ssDNA and the DNA damage-dependent cellular dynamics of DrSSB. The x-ray crystal structure of the DrSSB-ssDNA complex shows that ssDNA binds to surfaces of DrSSB that are analogous to those mapped in homotetrameric SSBs, although there are distinct contacts in DrSSB that mediate species-specific ssDNA binding. Observations by electron microscopy reveal two salt-dependent ssDNA-binding modes for DrSSB that strongly resemble those of the homotetrameric Escherichia coli SSB, further supporting a shared overall DNA binding mechanism between the two classes of bacterial SSBs. In vivo, DrSSB levels are heavily induced following exposure to ionizing radiation. This accumulation is accompanied by dramatic time-dependent DrSSB cellular dynamics in which a single nucleoid-centric focus of DrSSB is observed within 1 h of irradiation but is dispersed by 3 h after irradiation. These kinetics parallel those of D. radiodurans postirradiation genome reconstitution, suggesting that DrSSB dynamics could play important organizational roles in DNA repair.     

Improved methods for the preparation of N6-(2-carboxyethyl)-NAD and poly(ethylene glycol)-bound NAD(H)

N⁶-(2-carboxyethyl)-NAD was prepared by alkylation of NAD with 3-iodopropionic acid instead of propiolactone, which is not commercially available now because of its carcinogenicity. This new method had the advantage of forming fewer by-products during the reaction. New methods for purification of diaminopoly (ethylene glycol) and poly (ethylene glycol)-bound NAD(H) were also described. As a results, it was possible to prepare highly purified PEG-NADH and PEG-NAD.     

Response to mercury (II) ions in Methylococcus capsulatus (Bath)

The mercury (II) ion is toxic and is usually detoxified in Bacteria by reduction to elemental mercury, which is less toxic. This is catalysed by an NAD(P)H-dependent mercuric reductase (EC 1.16.1.1). Here, we present strong evidence that Methylococcus capsulatus (Bath) - a methanotrophic member of the Gammaproteobacteria - uses this enzyme to detoxify mercury. In radiorespirometry studies, it was found that cells exposed to mercury dissimilated 100% of [(14) C]-methane provided to generate reducing equivalents to fuel mercury (II) reduction, rather than the mix of assimilation and dissimilation found in control incubations. The detoxification system is constitutively expressed with a specific activity of 352 (±18) nmol NADH oxidized min(-1) (mg protein)(-1) . Putative mercuric reductase genes were predicted in the M.?capsulatus (Bath) genome and found in mRNA microarray studies. The MerA-derived polypeptide showed high identity (>?80%) with MerA sequences from the Betaproteobacteria.     

Host poly(ADP-ribose) polymerases (PARPs) in acute and chronic bacterial infections

Protein ADP-ribosylation is a reversible post-translational modification, which alters protein activity, localization, interactome or stability, leading to perturbation of cell signaling. This review summarizes the emerging data indicating that host cell ADP-ribosylating enzymes, poly(ADP-ribose) polymerases (PARPs), influence the course of a bacterial infection, in parallel to ADP-ribosylating bacterial toxins. Host cell PARP targeting could be an efficient therapeutic approach to treat certain bacterial infections, possibly by repurposing the approved or clinical trial PARP inhibitors developed for cancer therapy.