Lichen synusiae in forest and park communities of Novosibirsk

The distribution of lichens in forest and park communities of Novosibirsk has been surveyed. Lichen synusiae are found on soil, decaying wood, bark of indigenous and introduced wood species. The anthropogenic change of the lichen synusiae has been analyzed.     

Progress, spread and natural transmission of Bahia bark scaling of citrus in Brazil

Progress, spread and natural transmission of Bahia bark scaling of citrus were evaluated in a trial where 240 screenhouse‐nursed nucellar grapefruit plants –‘Clason’, ‘Little River Seedless’, ‘Red Blush’, ‘Reed’ and ‘Howell Seedless’ cvs – were planted alongside and 5 m apart from a 10‐year‐old symptomatic ‘Marsh Seedless’ grapefruit orchard. Plants were distributed in 16 rows of 15 trees, with three plants of each cultivar per row. Eight trial plants were kept in screen cages. Incidence of symptomatic plants was assessed at 3‐months intervals, for 5 years, and for further 2 years at irregular intervals. Cumulative maps of disease incidence were produced for each assessment date and used in all analyses. Temporal progress was analysed by nonlinear fitting of three disease progress models. Spread was characterised in three levels of spatial hierarchy by the following analyses: ordinary runs, binomial dispersion index, binary power law fitting, isopath mapping and nonlinear fitting of disease gradient models. The first symptomatic plant was detected 2 years after planting. In the last disease assessment, 5 years after the first, 98% of the unprotected plants were symptomatic. None of the screen‐caged trees showed any symptoms. Bahia bark scaling progress was polyetic and best described by the logistic model. Ordinary runs analysis showed little if any evidence of transmission between adjacent trees. Diseased plants showed a very aggregated pattern inside quadrats (D > 5 and b > 1.53). Isopath mapping showed that main spread was only because of the primary inoculum source. Secondary foci were also observed, but they were never dissociated from main initial disease focus. Disease gradient followed wind direction, starting near the original inoculum source and was best described by exponential model. These results support a hypothesis of Bahia bark scaling transmission by air‐borne vectors with limited dispersion ability.     

ACOUSTIC SIGNALS OF THE NOCTURNAL LIZARD GEKKO GECKO: ANALYSIS OF THE ‘LONG COMPLEX SEQUENCE’

ABSTRACT

Four types of vocalizations of the nocturnal lizard Gekko gecko (the ‘Tokay’) are described. A bark of intimidation, distress calls, a short not very intense call, apparently related to sexual inter-action, and a long, complex sequence. This ‘long sequence’ is considered to be a territorial proclamation which also functions as a mating-call. It has been analysed in detail with special emphasis on the intra-individual variations. The mean duration of this sequence is 22.3 s, the intensity is 70 dB at 1m and the maximum of energy is between 300 and 4000 Hz. This sequence is composed of three phases. The first one consists of several multipulse sounds called ‘rattles’, the second of bi-motifs which sound like a two syllable tok-kay, and the third, not always present, is a kind of ‘grumble’. The number of motifs and the occurrence of the third phase may vary but the duration of the motifs is relatively stable.     

Evoluzione Annuale della Cerchia Legnosa in Individui Maschili E Femminili di Ginkyo Biloba L.

Abstract

Wood ring evolution in male and female plants of GINKYO BILOBA L. — A morphological examen of the wood rings in Ginkyo biloba L. has been performed on stem sections from specimens of the Botanical Institute of Florence, on wood samples from the collection of Adriano Fiori and on wood cores extracted from the stem of male and female plants growing in the Botanical Garden of Florence.

At the same time the development of the growth ring has been followed on wood samples tacken off the stems of two adult Ginkyo plants growing in the Botanical Garden of Florence.

All the material which has been studied shows the same characters, that is the frequency of uncomplete crescent-shaped wood rings, and consequently a large degree of eccentricity of the stems, depending not only upon the uncomplete wood rings, but also on the changing width of each ring.

Microscopical analysis has pointed out the presence of false rings, limited by discontinuous late wood, particularly in the female plant. This character has been observed only in a fossil wood of Ginkyo bonesii.

It has not been possible to assers how many rings or crescents are formed during one year. From dating records made on wood cores it seems that more than one ring could differentiate during one year, but the cambium shows a very irregular activity in Ginkyo. The factors which control the formation of false and uncomplete wood rings (wood crescents) are also unknown; their formation possibly depending upon environment conditions.

External factors such as water deficiency probably control cambial activity through auxin production. Larson (1964) has shown that draught causes a decrease in tracheids diameter, and the formation of false growth rings; thus the same causes could have been in action in our plants.

Noteworthy are also the data by Gungkel and Thimann (in Larson 1964) showing that auxin content increases downwards in the shoots of Ginkyo and that the apical bud has a very low auxin production, so that it seems possible that in Ginkyo the leaves supply something which the cortical tissue converts into auxin.

Lastly, the almost continuous growth activity of the cambium in Ginkyo must be pointed out, this causes a great difficulty in checking the beginning and the end of this process along the year. It is any way possible to establish the time of the highest cambial activity, which lies in June-July both in the female and in the male plants.     

Culture studies on Radula flaccida Lindenb. & Gottsche

Abstract

Radula flaccida has been grown on defined inorganic media. Its growth varies with the type and concentration of the media, lower concentrations proving better than higher ones. Basile's medium supported a better growth of the liverwort than that of Diller et al., Müller's medium being least effective. The liverwort was successfully established on leaves and bark of some higher plants, thus proving that it is not ‘host’ specific with respect to leaf types and that it is not exclusively epiphyllous. Its less frequent occurrence on bark may be due to other habitat factors.     

Apoprotein heterogeneity increases spectral disorder and a step-wise modification of the B850 fluorescence peak position

It has already been established that the quaternary structure of the main light-harvesting complex (LH2) from the photosynthetic bacterium Rhodopseudomonas palustris is a nonameric ‘ring’ of PucAB heterodimers and under low-light culturing conditions an increased diversity of PucB synthesis occurs. In this work, single molecule fluorescence emission studies show that different classes of LH2 ‘rings’ are present in “low-light” adapted cells and that an unknown chaperon process creates multiple sub-types of ‘rings’ with more conformational sub-states and configurations. This increase in spectral disorder significantly augments the cross-section for photon absorption and subsequent energy flow to the reaction centre trap when photon availability is a limiting factor. This work highlights yet another variant used by phototrophs to gather energy for cellular development.     

Taxonomic composition of dendrobiontic Diptera and the main trends of their adaptive radiation

Some dipterans breeding in the wood and bark of dying trees are analyzed. Nematocera are most closely associated with decaying wood; they play the predominant role in its decomposition. Among the higher Brachycera, the species dwelling in bark predominate. Directly in the wood substrate, specific characters of the wood favor the development of relic forms of Diptera. Nine ecological groups of xylo-and phlaeobionts were distinguished. Settlement on wood as a specific substrate is concluded to be one of the trends in the evolution of dipterans. Despite the breeding of the relic dipteran groups in wood, this fact cannot be the initial point for further radiation of dipterans.     

The conservation requirements of an endangered hoverfly, Hammerschmidtia ferruginea (Diptera, Syrphidae) in the British Isles

The saprophagous larva of the endangered hoverfly, Hammerschmidtia ferruginea (Fallén, 1817) (Diptera, Syrphidae) develops in wet, decaying sap under the bark of dead trees and branches of aspen, Populus tremula L. (Saliaceae). However this breeding site is transient: wet decay builds up patchily over 1.5–2 years of the tree or branch dying and lasts for a further 1–3 years before the bark falls off. Between 1990 and 2006, H. ferruginea swung through a cycle of abundance when the number of localities where it was detected dropped from 13 to 5 and back to 8. Fluctuations in amounts of dead wood caused by winds and storms probably explain this population swing. When there are few dead trees and branches, H. ferruginea breeds in sap flows on live P. tremula trees and populations are maintained but at low levels. To prevent local extinctions during periods when fallen wood is scarce, breeding habitat can be supplemented by felling trees and branches. Fallen wood with wet decaying sap is also important as an assembly site for mate selection. Adult food plants include flowers of bird cherry Prunus padus, rowan Sorbus aucuparia and hawthorn Crategus monogyna. Adults were recorded dispersing up to 1 km but are probably able to move further than this.     

Epiphytic vegetation on pollarded trunks of Fraxinus excelsior in four different habitats at Grinde,Leikanger, western Norway

The epiphytic vegetation on 24 pollarded trees of Fraxinus excelsior at the farm Grinde, Leikanger, western Norway was investigated. Each trunk was divided into a basal zone, a middle zone and a top zone. In each zone the four different aspects were analysed (12 sampling units from each trunk). Within a total of 276 sampling units, 162 taxa were recorded (99 lichens, 56 bryophytes, 7 vascular plants). The trunks were covered mainly by an old, thick and occasionally swollen bark, but decaying wood did not occur. Their habitats were different, and each trunk was classified into one of four categories: open meadow, wooded hay meadow, deciduous wood, and spruce plantation. A climate station was established in each habitat to measure important parameters. The floristic and environmental data were analysed by canonical correspondence analysis (CCA). The floristic data were classified into eight TWINSPAN groups that have been taken into account in the CCA diagrams. At Grinde all the pollarded trunks grew under fairly homogeneous conditions during a more extensive agricultural period until about 1962. The deciduous wood developed by tree colonization on old meadows and wooded hay meadows, whilst spruce has been planted in a small part of the area. Floristic differences in the epiphytic vegetation between the four different habitats were found, which suggests that changes in the vegetation have developed during the last two or three decades. The spruce plantation was the most shady habitat having a very sparse epiphytic vegetation, mainly remnants from vegetation established during more open area conditions.     

Pattern of Substrate Preferences of Free Living Protists (Myxomycetes) on Decaying Wood

We have studied the influence of the stage of decomposition and acidity of wood, as well as the illumination of the microhabitat on the species composition, abundance, and occurrence of slime molds (Myxomycetes) of the xylobiontic (inhabitants of the wood) substrate complex of forest communities in Siberia (Altai krai, Altai Republic, and Novosibirsk oblast). This work is based on a study of 1777 samples of fruit bodies (sporophores) of myxomycetes. In the analysis of data for communities of Myxomycetes of the xylobiontic substrate complex, we recognize a successional series which clearly correlates with the stage of wood decomposition. The study of the distribution of the species composition of the slime mold on wood of various stages of decomposition shows that the maximum number of species is observed on dead trunks where the wood is of medium density and the bark can easily be separated (W3). The lowest specificity and diversity of species composition is observed on the fallen trunks of trees with very dense wood and dense bark (W1). These dead trees have low water-retaining capacity, tight bark, and almost intact wood containing large amounts of lignin, preventing the invasion of plasmodia and myxamoebae of Myxomycetes into the trunk. A study of the location of slime-mold colonies in relation to the illumination level shows that the greatest number of species is found on the front, side, and bottom parts of dead trunks of woody plants. The least specificity and the least variety of Myxomycetes species are found on apical parts of dead tree trunks facing the sun. The exception are species with large fruit bodies such as Fuligo septica and Reticularia splendens, which are most often observed on the upper parts of the sun facing trunks of woody plants. In the research area, the complex of species typical for wood of coniferous trees is described. It is noted that acidophilic slime molds of the genera Comatricha and Cribraria can be traced in xylobiontic and epiphytic–corticuloid substrate complexes.     

Variation of cellulose microfibril angles in softwoods and hardwoods-a possible strategy of mechanical optimization

Position-resolved small-angle X-ray scattering was used to investigate the nanostructure of the wood cell wall in two softwood species (Norwegian spruce and Scots pine) and two hardwood species (pedunculate oak and copper beech). The tilt angle of the cellulose fibrils in the wood cell wall versus the longitudinal cell axis (microfibril angle) was systematically studied over a wide range of annual rings in each tree. The measured angles were correlated with the distance from the pith and the results were compared. The microfibril angle was found to decrease from pith to bark in all four trees, but was generally higher in the softwood than in the hardwood. In Norwegian spruce, the microfibril angles were higher in late wood than in early wood; in Scots pine the opposite was observed. In pedunculate oak and copper beech, low angles were found in the major part of the stem, except for the very first annual rings in pedunculate oak. The results are interpreted in terms of mechanical optimization. An attempt was made to give a quantitative estimation for the mechanical constraints imposed on a tree of given dimensions and to establish a model that could explain the general decrease of microfibril angles from pith to bark.     

Introducing anatomical techniques to subfossil wood

Successful cross-dating of subfossil wood, ideally in combination with precise information on germination and dieback, requires the accurate detection of tree-ring width (TRW) boundaries along continuous measurement tracks from pith to bark. However, wood decay and the mechanical deformation of cells often challenge the dendrochronological analysis and subsequent paleoclimatic and environmental interpretations. Here, we show that wood anatomical techniques can improve the assessment of heavily degraded and/or deformed material. We apply state-of-the-art sample preparation, thin sectioning and double-staining to a unique collection of Late Glacial pines that were growing ∼13,000 years ago in the vicinity of Zurich, Switzerland. Highly resolved anatomical observations not only reveal detailed insights into the quality of each cell, but also allow the extent of wood deformation to be identified. By improving the detection and cross-dating of particularly narrow rings, TRW series might be extended towards the pith and bark, where decomposition and distortion is usually most severe, thus adding to a better understanding of possible germination and dieback processes, respectively. Moreover, thin sectioning has the potential to manually reconstruct original TRWs by correcting for post-mortem deformed ring structures. Our results suggest that anatomical techniques should be routinely applied in the assessment of historical, archaeological and subfossil wood.     

中国特有植物台湾杉的生物学特性及其保护

本文全面地综述了我国一级国家重点保护植物台湾杉的生物学特性,其中有外部形态特征,内部结构包括苗端、叶片、树皮及木材结构,雌雄配子体与胚胎发育,花粉和染色体。此外还有台湾杉的组织培养、地理分布,生态学与群落学特性等。最后,本文作者还初步分析了台湾杉的濒危原因,并提出了具体保护措施。     

Decaying wood is a sodium source for mountain gorillas

Like several other non-human primates, mountain gorillas (Gorilla beringei beringei) in Bwindi Impenetrable National Park, Uganda consume decaying wood, an interesting but puzzling behaviour. This wood has little obvious nutritional value; it is low in protein and sugar, and high in lignin compared to other foods. We collected pieces of wood eaten and avoided by gorillas, and other foods consumed by gorillas, and measured their sodium content. Wood was substantially higher in sodium than other dietary items, and wood pieces from stumps eaten contained more sodium than those that were avoided. Wood represented only 3.9% of the wet weight food intake of gorillas, but contributed over 95% of dietary sodium, leading us to conclude that decaying wood is an important sodium source for Bwindi gorillas. Because sodium has been leached from the weathered soils characteristic of the subhumid and humid tropics, and because terrestrial plants generally do not require sodium, tropical herbivores, including gorillas, often encounter problems locating the sodium essential for their well-being. Decaying wood is an unexpected sodium source.     

Developing tools to unravel the biological secrets of Rosellinia necatrix, an emergent threat to woody crops

White root rot caused by Rosellinia necatrix is one of the most destructive diseases of many woody plants in the temperate regions of the world, particularly in Europe and Asia. Recent outbreaks of R. necatrix around the globe have increased the interest in this pathogen. Although the ecology of the disease has been poorly studied, recent genetic and molecular advances have opened the way for future detailed studies of this fungus. TAXONOMY: Rosellinia necatrix Prilleux. Kingdom Fungi; subdivision Ascomycotina; class Euascomycetes; subclass Pyrenomycetes; order Sphaeriales, syn. Xylariales; family Xylariaceae; genus Rosellinia. IDENTIFICATION: Fungal mycelium is present on root surfaces and under the bark, forming mycelium fans, strands or cords. A typical presence of pear-shaped or pyriform swellings can be found above the hyphal septum (with diameters of up to 13 μm). Sclerotia are black, hard and spherical nodules, several millimetres in diameter. Black sclerotia crusts may also form on roots. On synthetic media, it forms microsclerotia: irregular rough bodies composed of a compact mass of melanized, interwoven hyphae with no differentiated cells. Chlamydospores are almost spherical (15 μm in diameter). Synnemata, also named coremia (0.5-1.5 mm in length), can be formed from sclerotia or from mycelial masses. Conidia (3-5 μm in length and 2.5-3 μm in width) are very difficult to germinate in vitro. Ascospores are monostichous, situated inside a cylindrical, long-stalked ascus. They are ellipsoidal and cymbiform (36-46 μm in length and 5.5-6.3 μm in width). HOST RANGE: This fungus can attack above 170 different plant hosts from 63 genera and 30 different families, including vascular plants and algae. Some are of significant economic importance, such as Coffea spp., Malus spp., Olea europaea L., Persea americana Mill., Prunus spp. and Vitis vinifera L. DISEASE SYMPTOMS: Rosellinia necatrix causes white (or Dematophora) root rot, which, by aerial symptoms, shows a progressive weakening of the plant, accompanied by a decline in vigour. The leaves wilt and dry, and the tree can eventually die. White cottony mycelium and mycelial strands can be observed in the crown and on the root surface. On woody plant roots, the fungus can be located between the bark and the wood, developing typical mycelium fans, invading the whole root and causing general rotting. DISEASE CONTROL: Some approaches have been attempted involving the use of tolerant plants and physical control (solarization). Chemical control in the field and biological control methods are still under development.     

TREE RINGS: A NATURAL DATA-STORAGE SYSTEM

1. The wood of trees grown in temperate regions shows a periodicity in the form of rings which, with certain known exceptions, accurately reflects the annual cycle of the seasons. The wood thus has a built-in dating system. 2. Tree rings are not always the same width in successive years; the widths show a positive correlation with variations in environmental factors. 3. Trees in a given geographical area influenced by the same environmental conditions show similar patterns in their ring sequences and may thus be cross-dated. 4. Ring sequences from cross-dated trees may be used to construct long, accurate chronologies. This practice, the science of dendrochronology, is now so reliable that it is widely used in archaeology and has also served to calibrate the ¹⁴ dating method. 5. The extent of the variation in a ring sequence may be expressed in the form of a coefficient known as the mean sensitivity. 6. The climatic effects recorded in the growth rings are those which operate at certain crucial periods, such as the growing season. The effects are primarily those of rainfall and temperature; humidity is usually only secondary. 7. Damage by insects or fire may be dated by examination of ring sequences. 8. As tree-ring sequences correlate positively with contemporaneous meteorological data, they may be used in the reconstruction of past climates. This is the basis of extrapolatory dendroclimatology. 9. New isotope techniques have been developed which indicate the possibility of deducing the ambient temperature of the tree's environment whilst its wood was being formed. 10. Interpretative dendroclimatology aims to deduce from the features of a sample, or preferably from a number of samples of wood, the nature of the climate which influenced their development. 11. The wood of most growth rings is divisible into two zones, earlywood and late-wood. The former consists of larger, thin-walled cells while in the latter the cells are smaller and thick-walled. 12. Beams of light, X-rays and β-rays have been used in various instruments to determine the earlywood-latewood ratio. 13. The earlywood-latewood ratio is dependent upon genetic as well as climatic factors. Of the latter, summer rainfall is the most potent in producing latewood. 14. The ring-width data from a number of Recent and fossil wood specimens have been analysed to show that certain deductions may be made about the climate in which they were formed. 15. A histogram technique has been devised to show differences between wood specimens with otherwise similar coefficients. 16. Evidence has been produced in support of earlier work to the effect that ring-width sequences from different radii of a tree trunk have fundamentally similar features, thus demonstrating ‘circuit uniformity’. 17. The interpretation of the features of tropical woods is more complex. The mode of development of such a wood is the resultant of the interplay of genetical factors, endogenous rhythms and slight variations in environmental conditions. 18. There is evidence that endogenous rhythms are also involved in the development of woods in temperate as well as tropical regions.     

Community structure of polypores (Basidiomycota) in Andean alder wood in Argentina: Functional groups among wood‐decay fungi?

Abstract The polypores (Aphyllophorales s.l., Basidiomycota) are very effective wood decayers. Different species differ in their capacity to decay wood; therefore, many functionally different species can be found decaying different substrate conditions (decay stages and log diameter). This study aimed to describe the structure of the wood‐decay polypore communities that occur on different states of wood of the Andean alder (Alnus acuminata) within Argentina and to identify groups of polypore species that share the same substrate condition, and thus might have a similar functional role in the decay processes. We found 16 polypore species, among which Trametes versicolor, Bjerkandera adusta and Trametes cubensis were dominant species, showing the highest relative frequency in alder wood. Species richness was lower on trunks of living trees and higher on dead branches. Based on preferential occurrence on different wood conditions, a cluster analysis distinguished three groups, each of them containing one of the three dominant species. This corresponds to the situation of other groups of organisms, where each functional type consists of a dominant species that accounts for most of the ‘function’ and several subordinate species with similar functions. Albeit preliminary, our results provide a formal classification of wood‐decay fungi into functional types.     

Solid-State NMR Investigation of Bio-chars Produced from Biomass Components and Whole Biomasses

Bio-char is a by-product from thermochemical treatment of biomass and has been identified as an energy condensed product with a comparable heating value as commercial coal. However, the combustion of such solid product as an energy resource is only a preliminary application. It is highly possible to convert bio-char, which always has a condensed aromatic and porous structure to various high-value products. The investigations of the structures and formation pathways for the bio-char are very important to any future applications. In this study, six different biomass components, including cellulose, lignin, and tannin, and three whole biomasses—pine wood, pine residue, and pine bark—have been used to produce bio-char at 400, 500, and 600 °C. Solid-state NMR and FT-IR have been employed in this study to characterize the structures for the bio-chars. The results indicated that the bio-chars produced from lignin contained some methoxyl groups, and the bio-chars produced from tannin contained significantly higher amount of phenolic hydroxyl groups. Compared to the bio-chars produced from pine wood and residue, the bio-chars produced from pine bark contained more aromatic C–O bonds, and aliphatic C–O and C–C bonds, which may be due to the significantly higher amount of lignin and tannin in the pine bark. However, the elevated amounts of aromatic C–O and aliphatic C–O and C–C bonds in the bio-chars from pine bark appeared to be completely decomposed at 600 °C.     

Informal intercropping of legumes with cereals? A re-assessment of clover abundance in ancient Egyptian cereal processing by-product assemblages: archaeobotanical investigations at Khentkawes town,Giza (2300–2100 <Emphasis Type="SmallCaps">bc</Emphasis>)

The possibility that legumes were specifically cultivated as a separate fodder crop in ancient Egypt has been inferred, usually on the basis of abundance of both legume seeds and or dung in charred macro-botanical samples, combined with a lack of wood charcoal; the implication being that a scarcity of wood led to the use of dung as fuel, and that the legumes in the assemblage derive from livestock which had been fed with cultivated fodder. The archaeobotanical remains from excavations at the Old Kingdom ‘Khentkawes town’ (2300–2100 bc) on the Giza plateau in Egypt contained an abundance of legumes, but also much wood charcoal, and preservation of many fragile and ‘green’ seeds and plant parts. This assemblage has led to questioning of the theory of specific fodder cultivation in Pharaonic Egypt. In this article, alternative interpretations of legume-rich assemblages of cereal processing by-products are investigated. Intercropping of legumes with cereals is one of the most widespread and effective methods of improving crop value and security, and fodder/forage quality. Analysis of this assemblage has led to a hypothesis that Trifolium sp. and other ‘weeds’ may well have been viewed as integral plants within ancient Egyptian cereal fields, due to an awareness of the benefits of intercropping legumes with cereals—as opposed to having been specifically cultivated as a monocrop.