Anatomy and affinities of pseudococculinid limpets (Mollusca, Archaeogastropoda)

The anatomy of 12 pseudococculinid species, representing the two subfamilies and 10 (of 11 known) genera, is described in detail. Three new genera are erected, Yaquinabyssia, Copulabyssia and Amphiplica. Subfamilial and generic systematics are reconsidered and additionally based on anatomical characters. Characters defining subfamilies and genera (Pseudoeoeculininae: Pseudococculina, Notocrater, Tentaoculus, Mcsopelex, Bandabyssia, Kurilabyssia; Caymanabyssiinae: Caymanabyssia, Colotrachelus, Yuquinabyssia, Copulabyssia, Amphiplica) are the modifications in shell and radula, the number and arrangement of gill-leaflets, the size of the pedal gland, the degree of eye-reduction and the modifications of the seminal groove and of the copulatory organ. Separation of the Pseudococculinidae Hiekman, 1983 from the Cocculinidae Dall, 1882 at the superfamilial level is confirmed by great differences in their anatomy. Whereas the Cocculinidae are closely related to the Bathysciadiidae (Cocculinoidea). the Lepctcllidae, Pyropeltidae, Pseudococculinidae,? Bathyphytophilidae, Osteopeltidae, Cocculinellidae, Addisoniidae and Choristellidae form a clearly separated supcrfamily (Lepetelloidea). Both superfamilies compose the Cocculiniformia. a primitive but highly specialized arehaeogastropod suborder.     

Phylogeny of the Cocculinoidea (Mollusca, Gastropoda)

Abstract. The superfamily Cocculinoidea is a group of marine, deep-water, limpet-like gastropods. Recent speculation surrounding their affinities has concentrated on their placement within the Gastropoda. However, phylogenetic relationships within the Cocculinoidea, especially the monophyly of families and genera within the group, remain poorly understood. Phylogenetic analysis of 31 morphological characters for 15 cocculinoidean taxa and 2 outgroups resulted in a single most parsimonious tree, length=70, CI=0.62, and RI=0.71. Monophyly of the Cocculinoidea, Cocculinidae, and the genera Cocculina and Coccopigya was supported; Paracocculina and Coccocrater were found to be paraphyletic. Character optimization demonstrates that many characters often cited as diagnostic of various taxa, are often homoplastic and/or synapomorphies at different hierarchical levels.     

中国苦苣苔科植物的多样性与地理分布（附表）

物种多样性编目是开展生物多样性保护的重要基础,该研究结合最新分子系统学研究成果以及近年来发表的新资料,对中国苦苣苔科植物多样性和地理分布数据进行了统计和分析.结果表明:中国苦苣苔科植物共有44属671种(含种下单位,下同),其中特有属11个;特有种573种,占总种数的85.39%.种数最多的10个属依次为广义报春苣苔属(180种)、广义马铃苣苔属(122种)、石蝴蝶属(39种)、半蒴苣苔属(39种)、芒毛苣苔属(38种)、长蒴苣苔属(35种)、石山苣苔属(31种)、吊石苣苔属(31种)、蛛毛苣苔属(28种)、汉克苣苔属(22种).在地理分布上,种数排名前10的省份(区)有广西(260种,33属)、云南(236种,30属)、贵州(96种,28属)、广东(93种,17属)、四川(85种,21属)、湖南(58种,13属)、西藏(39种,9属)、湖北(29种,15属)、福建(26种,13属)、江西(25种,9属).含中国特有苦苣苔科植物的属中排前10位的分别为广义报春苣苔属(178种)、广义马铃苣苔属(119种)、石蝴蝶属(37种)、半蒴苣苔属(35种)、石山苣苔属(30种)、长蒴苣苔属(29种)、吊石苣苔属(23种)、蛛毛苣苔属(19种)、芒毛苣苔属(19种)、汉克苣苔属(11种).这表明中国南部和西南部是苦苣苔科植物的一个分布中心,特别是石灰岩地区有着高度的物种多样性和特有性,广义报春苣苔属、广义马铃苣苔属、石蝴蝶属、半蒴苣苔属、石山苣苔属、吊石苣苔属等为我国典型的优势属.此外,根据目前的研究现状,还对我国苦苣苔科植物资源的调查、分类学和系统发育研究、保护和可持续利用等进行了讨论.     

Gastropod evolutionary rates and phylogenetic relationships assessed using partial 28S rDNA and histone H3 sequences

Sequence data for two segments of 28S and Histone H3 from 36 gastropod taxa, a chiton, two bivalves and Nautilus are used to test recently published morphology‐based phylogenetic hypotheses of gastropod relationships. Statistical results suggest that the accuracy of the available hypotheses could be improved. The data support the monophyly of the Patellogastropoda (true limpets), Euthyneura and the ‘higher’ vetigastropods and the polyphyly of the ‘Cocculiniformia’. The division of the gastropods into two major clades (Eogastropoda and Orthogastropoda) as has been proposed on morphological grounds is not supported, and neither the Caenogastropoda nor Heterobranchia is well supported. Within the Euthyneura, opisthobranchs are paraphyletic with respect to the pulmonates. The hot vent taxon, Depressigyra, groups with the lower vetigastropod Pleurotomaria in some analyses. Much of the variability in the 28S rDNA segments lies in discrete areas of the sequence. Forone of the segments, corresponding to positions 691–942 of the mosquito Aedes albopictus 28S sequence, the variable regions represent known expansion regions (D4 and D5). For the other segment, corresponding to positions 2259–2538 of the A. albopictus sequence, the variable area, which is found in the patellogastropods, vetigastropods and Nautilus, represents an unreported expansion region. The data show marked variability in the rate of evolution in both segments of the 28S rDNA, whether or not the expansion regions are included. The variability is largely clade specific. Rates are high in the patellogastropods, vetigastropods, the lower heterobranch ‘Heterostropha’ (Cornirostra and Philippea), Depressigyra and the deep sea cocculinid limpet Coccopigya and substantially lower in other taxa. Rate variation in the histone H3 data is less extreme. The correlation between evolutionary rates in the two 28S rDNA segments is very high, andis also significant for the the pairing of each of the 28S rDNA segments with H3. The rate variability may be due to differential selection but no causative factor has been identified. The histone H3 data have high codon usage bias. For all amino acids encoded by multiple codons, at least some triplets occur at a frequency of less than a quarter of their expected usage. For all three‐, four‐and sixfold degenerate amino acids, the most abundant triplet occurs at least twice as frequently as expected. Despite the usage bias, there is a large amount of apparent homoplasy in synonymous alternatives at both the first and third codon positions.     

Phylogeny,classification and evolution of the water scavenger beetle tribe Hydrobiusini inferred from morphology and molecules (Coleoptera: Hydrophilidae: Hydrophilinae)

The water scavenger beetle tribe Hydrobiusini contains 47 species in eight genera distributed worldwide. Most species of the tribe are aquatic, although several species are known to occur in waterfalls or tree mosses. Some members of the tribe are known to communicate via underwater stridulation. While recent morphological and molecular‐based phylogenies have affirmed the monophyly of the tribe as currently circumscribed, doubts remain about the monophyly of included genera. Here we use morphological and molecular data to infer a species‐level phylogeny of the Hydrobiusini. The monophyly of the tribe is decisively supported, as is the monophyly of most genera. The genus Hydrobius was found to be polyphyletic, and as a result the genus Limnohydrobius stat. rev. is removed from synonymy with Hydrobius, yielding three new combinations: L. melaenus comb.n. , L. orientalis comb.n. , and L. tumbius comb.n. Recent changes to the species‐level taxonomy of Hydrobius are reviewed. The morphology of the stridulatory apparatus has undergone a single remarkable transformation within the lineage, from a simple, unmodified pars stridens to one that is highly organized and complex. We present an updated key to genera, revised generic diagnoses and a list of the known distributions for all species within the tribe.     

巴西竹类生物多样性

巴西是全球生物多样性最丰富的地区,其竹类多样性也极为丰富。结合现存资料及野外调查,对巴西全境的竹类分布格局进行了讨论。巴西全国有原生竹亚科植物256种(含2亚种及3变种),北部地区草本竹类(莪莉竹族)最丰富,有61种,而东南部地区木本竹类(箣竹族)最丰富,有96种。偏穗竹属(Merostachys)(43种)和丘斯夸竹属(Chusquea)(45种)是最常见的属,并是最具潜在经济利用的竹类。属种的特有性分别高达32.4%和68.8%。特有属有11个,分别为莪莉竹族的双药莪利草竹属(Diandrolyra)、独焰草竹属(Eremitis)、小百瑞草竹属(Parianella)、赖茨草竹属(Reitzia)、苏克蕾草竹属(Sucrea)和箣竹族的南美梨藤竹属(Alvimia)、离枝竹属(Apoclada)、密穗竹属(Athroostachys)、卡姆巴珠瓦竹属(Cambajuva)、菲尔盖拉斯竹属(Filgueirasia)、无枝竹属(Glaziophyton)。     

Comparative seed morphology of <Emphasis Type="Italic">Leandra</Emphasis> (Miconieae,Melastomataceae)

The seed morphology of 79 species of neotropical Miconieae (Melastomataceae) is presented. These species have been chosen, in majority, from the polyphyletic genus Leandra. A few other species from the polyphyletic genera Miconia, Ossaea, and Clidemia were also sampled, because of potential similarities. Sixteen morphological seed types are defined after analysis through light microscopy and scanning electron microscopy. The seed morphology appears to possess a great deal of variability on the level of the overall shape as well as the structure and the surface of the testa. The different types defined here do not match with genera or sections, but rather are composed of species coming from different genera. In comparison with a preliminary molecular phylogeny study done on Leandra, some types of seeds are related to well supported clades. In some cases seed morphology corresponds with natural groups of species, thus being of high phylogenetic importance.     

Phylogeny and taxonomy of European funnel‐web spiders of the Tegenaria−Malthonica complex (Araneae: Agelenidae) based upon morphological and molecular data

The taxonomy and systematics of European house spiders, currently constituting the ill‐defined Tegenaria?Malthonica complex (including Aterigena) in the family Agelenidae, are revised. In Europe four monophyletic genera and 81 species are defined. One genus, Eratigena gen. nov. , and seven species are described as new; at species level 17 new synonyms and 20 new combinations are proposed, and the original combination of 14 species is reinstated. Five species could not be placed (incertae sedis) because of insufficient material and one taxon is regarded as ‘nomen dubium’. On the basis of a detailed morphological assessment, 88 characters were chosen for a cladistic analysis. Phylogenetically informative characters include mostly spination patterns as well as spinneret and genital structures. In addition to morphology, three gene sections [cytochrome c oxidase subunit 1 (CO1), nicotinamide adenine dinucleotide dehydrogenase subunit 1 (NADH1) 28S] were analysed. Morphological and molecular analyses were performed individually and in combination applying maximum parsimony and Bayesian tree search methods. In all resulting trees Malthonica and Tegenaria in their present composition are either polyphyletic or paraphyletic. Consequently, we redefined the two genera and erected a new genus, Eratigena gen. nov. Identification keys are provided for the European agelenid genera as well as for the European species of Tegenaria and Eratigena gen. nov. The genera and most of the constituent species are described and illustrated. The new classification has also been applied to some extra European members of the Tegenaria‐Malthonica complex resulting in additional three new synonyms, seven reversals to the original combination, and four new combinations. © 2013 The Linnean Society of London     

Species distribution profiles of the neotropical orchids Masdevallia and Dracula (Pleurothallidinae,Orchidaceae); implications for conservation

The orchid genera Masdevallia and Dracula bear very strange and bizarre flowers. They are, however, very popular with plant enthusiasts and there is a fair amount of commercial trade in these genera. The genera belong to a sub-tribe of the orchids, the Pleurothallidinae, which otherwise mostly have small and insignificant flowers. The majority of the species of Masdevallia and Dracula have been reported from single localities and approximately two thirds of all species are found at three or fewer sites. Most genera in the sub-tribe have similar distribution patterns. Using published deforestation rates and species distribution profiles we calculate that 402 of the total 3405 pleurothallid species may have been driven to extinction by random deforestation events. It is possible that as many as 46 Masdevallia species and 14 Dracula species have already been lost and that annual extinction rates for the two genera are 1 and 0.3 species per year respectively. It has been suggested that the two genera should be protected, by listing them in CITES Appendix I. It is unlikely that embargoes on trade would change extinction rates caused by forest conversion. Such embargoes might actually hamper ex situ conservation efforts.     

青藏高原东南部察隅河流域种子植物区系研究

在野外植被调查、标本采集和资料查询整理的基础上,汇总了察隅河流域种子植物名录,并对流域内植物物种的组成、优势科属、区系地理成分及性质进行分析。运用R语言在属水平上与其周边16个地区的植物区系进行聚类及主成分分析,探讨察隅河流域种子植物区系与其他区系之间的关系。结果表明：(1)察隅河流域共含种子植物138科、689属、2 771种(含变种),其中裸植子物4科12属56种,被子植物134科677属2 715种,被子植物中双子叶植物112科531属2 270种占绝对优势。(2)区内地理成分联系广泛,科的区系划分除世界分布类型外,热带分布型53科(55.21%),温带分布型43科(44.79%);属的区系划分中所有类型均有分布,温带分布型396属(62.07%),热带分布型230属(36.05%);属的分布型与科相比具有更明显的温带性质;植物种类丰富度高但特有成分低,无特有科,仅含12特有属。(3)流域内植被垂直地带性分布较为明显,保留了较多古老孑遗植物,如裸子植物的西藏红豆杉(Taxus wallichiana)、察隅冷杉(Abies chayuensis)和云南松(Pinus yunnanensis)等;由于青藏高原的上升运动,成为杜鹃花属(Rhododendron)、虎耳草属(Saxifraga)、龙胆属(Gentiana)和报春花属(Primula)等新生高山植物区系成分分化繁衍的摇篮。(4)察隅河植物区系属喜马拉雅山南侧热带成分向温带成分过渡的区系性质,与珠峰自然保护区植物区系更为相似。     

A chemotaxonomic study of mucilages in American Zamiaceae

Abstract

Methylrhamnose, fucose, rhamnose, mannose, arabinose, galactose, and glucuronolactone are the monosaccharides identified in hydrolysed mucilages collected from 37 species belonging to the five American cycad genera (Ceratozamia, Chigua, Dioon, Microcycas and Zamia). The patterns of monosaccharide distribution in the mucilages resulted to be typical at the generic level, with the exception of Chigua and Zamia the patterns of which were similar. No differences appeared among species within single genera, with the exception of Zamia in which minor differences were observed at the intrageneric level. Differences and similarities among patterns at both intergeneric and intrageneric levels are discussed for their systematic implications.     

CHROMOSOME NUMBERS IN COMPOSITAE. IV. AMBROSIEAE

New chromosome observations are reported for 30 species and varieties from 4 genera of Ambrosieae: Ambrosia (including Franseria), Diceria, Hymenoclea and Iva. Neither polyploidy nor aneuploidy is known in the genera Dicorea, Hymenoclea or Xanthium. Aneuplcid reduction appears to have played a role in the genome evolution of several species of Iva and Ambrosia. Polyploid species occur in both Iva and Ambrosia and polyploid series exist for at least 5 species or species aggregates of the latter. All available evidence indicates that the primitive chromosome number for the tribe is x = 18, differentiation and speciation having occurred at this level, which is here termed diploid. The group, however, must ultimately have been of polyploid origin from forms with x = 9.     

中国中生代的马通蕨科植物:化石记录、多样性与时空分布特征*

现生真蕨目马通蕨科(Matoniaceae)植物仅存Matonia和Phanerosorus两属, 集中分布于马来西亚、印度尼西亚等热带地区。马通蕨科植物在中生代时期全球广布, 且主要分布于热带、亚热带地区, 有近9个属, 被作为热带、亚热带气候的标志性植物化石之一。本文梳理总结了中国中生代的马通蕨科化石记录并分析其多样性特征, 共计有2属16种, 包括异脉蕨属(Phlebopteris) 15种和准马通蕨属(Matonidium) 1种。对其化石记录和地质地理分布分析表明, 晚三叠世时期, 异脉蕨属植物广泛分布于热带—亚热带湿热气候区, 包括华南一带的四川、湖北、 云南、西藏、福建等地; 早侏罗世时期, 其分布逐渐向北方扩展, 在南、北方植物区系界线附近均有发现; 中侏罗世局限于湖北、青海等地; 早白垩世时仅在黑龙江和西藏少量发现。准马通蕨属仅在黑龙江地区的早白垩世地层中发现。整体上, 马通蕨科在中国中生代的分布范围变迁与气候带范围变化相吻合。     

CHROMOSOME NUMBERS IN COMPOSITAE. II. HELENIEAE

Raven , Peter H. (Rancho Santa Ana Botanic Garden, Claremont, Calif.), and Donald W. Kyhos. Chromosome numbers in Compositae. II. Heleniae. Amer. Jour. Bot. 48(9): 842–850. Illus. 1961.—Chromosome counts are now available for 42 of the approximately 55 genera of Compositae, tribe Helenieae, which is predominantly a group of western North America. These chromosome numbers are summarized here at the generic level, and 100 original counts for the tribe are added, including what seem to be the first published reports for the genera Amblyopappus, Baeriopsis, Hulsea, Jaumea, Pericome, Rigiopappus, Trichoptilium, and Venegasia, as well as for many species. The phylogeny of Chaenactis is discussed in the light of published records and 46 original counts, and C. douglasii is shown to include plants in which n = 6, 12, and 18, which differ somewhat morphologically. Helenium has species which have a complete series of aneuploid numbers from n = 13 to n = 17. Chromosome numbers coincide with morphological variability in indicating that Helenieae are a diverse group. More detailed studies of various kinds will be necessary before the genera of Helenieae can be re-aligned effectively, but it is evident that different genera show affinities with various other tribes of the family. Nevertheless, it is thought to be convenient to continue to recognize Helenieae at the tribal level for the present.     

Preliminary study on phylogenetic position and delimitation of the ciliate arthrodontous genera of the moss family Mniaceae

The history of the generic and sectional concepts in the traditional moss family Mniaceae is summarised. The division of the Mniaceae into nine genera has been generally accepted. A phylogenetic analysis, based on 35 Mniaceae samples as ingroup and one Leptostomataceae and three Bryaceae samples as outgroups was completed. A total of 113 new sequences were obtained and 4139 aligned characters were included in the combined dataset. Bayesian inferences based on the combined data set showed five well supported clades, which, as a whole, form the monophyletic family Mniaceae. The number of genera in the traditional Mniaceae is 9 and the number of species is 74. All the genera appear monophyletic except Plagiomnium; accepting Orthomnion at the generic level makes Plagiomnium paraphyletic. The principle that only monophyletic taxa are allowed and may be named necessitates the uniting of Plagiomnium and Orthomnion. The necessary combinations are made. The taxonomy of the genera and sections is discussed. Rhizomnium section Macromnium T.J.Kop. & Y.Sun, sect. nov. is described and the new combination Rhizomnium chlorophyllosum (Kindb.) T.J.Kop. is made. The controversy of paraphyly – monophyly in accepting and naming taxa is discussed and Plagiomnium versus Orthomnion given as an example. All the present genera and species seem to have diverged in the area of the Laurasian supercontinent and the speciation of most genera took place in the temperate forested areas of western and eastern North America, Europe and south-eastern Asia.     

Interactive 3D anatomy and affinities of Bathysciadiidae (Gastropoda,Cocculinoidea): deep‐sea limpets feeding on decaying cephalopod beaks

The anatomy of five bathysciadiid limpets, the type species Bathysciadium costulatum (Locard, 1898 ), Bathysciadium sp. B (off New Zealand), Bathypelta pacifica (Dall, 1908 ), Bathypelta sp. A (off New Zealand), and Bathyaltum wareni n.g., n.sp. (deep East Atlantic Ocean Basins), which all feed on decaying cephalopod beaks, has been investigated by means of semithin serial sectioning and interactive, computer‐aided 3D reconstructions. Bathyaltum wareni is described as a species new to science based on additional SEM photos of shell and radula. Differences between species are found in conditions of shell, protoconch, mantle papilla, copulatory organ, receptaculum openings, oral lappets, and rectal histology. The Bathysciadiidae share several synapomorphies with the Cocculinidae (s. str.), namely the pseudoplicatid gill, a single, left kidney, the hermaphroditic gonad with the single, glandular gonoduct, and the statocysts with single statoliths. Therefore, these families are united in a clade Cocculinoidea, which is considered to be highly modified offshoot of early gastropods independent of the likewise “cocculiniform” Lepetelloidea, which should be classified among the Vetigastropoda. J. Morphol. 272:259–279, 2011. © 2010 Wiley‐Liss, Inc.     

TrnL-trnF sequence data imply paraphyly of Aquilaria and Gyrinops (Thymelaeaceae) and provide new perspectives for agarwood identification

The genera Aquilaria and Gyrinops (Thymelaeaceae, Malvales) are well known for the production of agarwood which is a highly wanted forest product of substantial economic value. The taxonomic status of Aquilaria and Gyrinops as separate genera is doubted as they are only distinguished by the number of stamens. We investigated their status by conducting phylogenetic analyses of DNA sequences from the plastid trnL-trnF spacer. Control of international trade of agarwood is currently hampered by the failure of traditional methods such as microscopy to identify samples to species level. We therefore evaluated the potential of molecular identification of agarwood by searching for species- and region-specific plastid DNA polymorphisms. DNA sequences were obtained from 31 Thymelaeaceae accessions encompassing 20 different species in six genera. Aquilaria and Gyrinops appear to be paraphyletic. Success in sequencing wood samples demonstrates that molecular markers provide new perspectives for agarwood identification.     

PALAEOSTACHYA DIRCEI N. SP., AN AUTHIGENICALLY CEMENTED EQUISETALEAN STROBILUS FROM THE MIDDLE PENNSYLVANIAN OF SOUTHERN ILLINOIS

Equisetalean strobili normally are encountered as disarticulated organs. This condition has necessitated the creation of 12 form genera to accommodate the various morphological architectures and anatomical configurations. Taxonomically useful characteristics, which are discernable in permineralized specimens, are rarely distinguishable in coalified compressions due to their destruction during diagenesis and coalification. Therefore, genera established on the position of sporangiophore-trace origin, such as Schimperia Remy and Remy, are untenable when dealing with coalified compressions. Although the two largest genera of strobili, Calamostachys Schimper and Palaeostachya Weiss, may be synonymous, it is proposed that these form genera be retained when dealing with coalified compression specimens. Each genus provides a particular architectural concept for specimens which may not be assignable to the species level. Calamostachys and Palaeostachya are highly overspeciated genera. It is suggested that characteristics necessary to delimit new species include bract height, degree of bract fusion, disposition of bracts, bract: sporangiophore ratio, number of sporangia per sporangiophore, and sexual status.     

MOLECULAR DELINEATION OF SPECIES AND SPECIES RELATIONSHIPS IN THE RED ALGAL AGAROPHYTES GRACILARIOPSIS AND GRACILARIA (GRACILARIALES)1

Delineation of species in the economically important agarophyte genera Gracilaria and Gracilariopsis has proven extremely difficult using available morphological characteristics. In this study, we examine the usefulness of two transcribed spacers for molecular systematic studies of these genera. The polymerase chain reaction was used to amplify the internal transcribed spacers (ITSs) and the intervening 5.8S ribosomal DNA of the nuclear ribosomal repeat region. In addition, a plastid spacer region and flanking regions of coding genes were amplified from the RUBISCO operon. Both regions were sequenced for individuals and populations of Gracilariopsis lemaneiformis (Bory) Dawson, Acleto, et Foldvik to determine the usefulness of these spacers in delimiting populations. These studies reveal that there is as much variation among individuals of a population as there is between individuals of geographically separate populations. In addition, the ITS spacer regions were compared between different species of Gracilariopsis and Gracilaria. The nuclear ITS spacer region is conserved at a species level in both genera and provides phylogenetically informative characters that can be used to examine species interrelationships among relatively closely related taxa. However, because of the difficulties of aligning this entire region among species from the two genera, the ITS region is not useful for examining intergenera relationships. ITS interspecies sequence comparisons indicate that Gracilariopsis lemaneiformis from California is significantly different from G. lemaneiformis from China and that a species of Gracilariopsis from Peru is more closely related to G. lemaneiformis from North Carolina than it is to the other Gracilariopsis species examined. In addition, these studies indicate that Gracilaria chilensis Bird, McLachlan, et Oliveira from New Zealand and Gracilaria tenuistipitata Chang et Xia from southeast Asia are as closely related as are Gracilaria verrucosa (Hudson) Papenfuss, G. pacifica Abbott, and Gracilaria robusta Kylin. Phylogenetic analysis of aligned plastid spacer sequences from Gracilaria and Gracilariopsis taxa provide similar conclusions about species relationships.