Spatiotemporal variability of stream habitat and movement of three species of fish

Relationships between environmental variability and movement are poorly understood, due to both their complexity and the limited ecological scope of most movement studies. We studied movements of fantail (Etheostoma flabellare), riverweed (E. podostemone), and Roanoke darters (Percina roanoka) through two stream systems during two summers. We then related movement to variability in measured habitat attributes using logistic regression and exploratory data plots. We indexed habitat conditions at both microhabitat (i.e., patches of uniform depth, velocity, and substrate) and mesohabitat (i.e., riffle and pool channel units) spatial scales, and determined how local habitat conditions were affected by landscape spatial (i.e., longitudinal position, land use) and temporal contexts. Most spatial variability in habitat conditions and fish movement was unexplained by a site’s location on the landscape. Exceptions were microhabitat diversity, which was greater in the less-disturbed watershed, and riffle isolation and predator density in pools, which were greater at more-downstream sites. Habitat conditions and movement also exhibited only minor temporal variability, but the relative influences of habitat attributes on movement were quite variable over time. During the first year, movements of fantail and riverweed darters were triggered predominantly by loss of shallow microhabitats; whereas, during the second year, microhabitat diversity was more strongly related (though in opposite directions) to movement of these two species. Roanoke darters did not move in response to microhabitat-scale variables, presumably because of the species’ preference for deeper microhabitats that changed little over time. Conversely, movement of all species appeared to be constrained by riffle isolation and predator density in pools, two mesohabitat-scale attributes. Relationships between environmental variability and movement depended on both the spatiotemporal scale of consideration and the ecology of the species. Future studies that integrate across scales, taxa, and life-histories are likely to provide greater insight into movement ecology than will traditional, single-season, single-species approaches. The Virginia Cooperative Fish and Wildlife Research Unit is jointly sponsored by the US Geological Survey, Virginia Polytechnic Institute and State University, Virginia Department of Game and Inland Fisheries, and Wildlife Management Institute.     

Do pools impede drift dispersal by stream insects?

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Success and failure in a lotic crayfish invasion: the roles of hydrologic variability and habitat alteration

1. This paper examines the distribution, habitat relationships, and potential for spread of non‐native signal crayfish (Pacifastacus leniusculus) in streams of the Truckee River catchment, California, U.S.A. Crayfish associations with natural features and with impoundments and flow alteration were examined in a survey of 33 streams. Abundance changes were followed over 5 years, which included some of the highest and lowest flows on record, in three streams, two unregulated and one regulated. Movement of marked crayfish was studied in one 0.5 km stream reach just upstream from a reservoir. 2. Signal crayfish were most abundant in low‐gradient streams and were positively associated with proximity to reservoirs (both upstream and downstream). Crayfish were more likely to be found in regulated than unregulated sites, and did not occur in sites upstream of barriers, such as culverts, that separated them from reservoirs or lakes. 3. Crayfish declined in abundance in years following particularly intense and prolonged wet‐season spates, leading to a negative association between crayfish abundance and both peak discharge and duration of bankfull flows. 4. Crayfish moved distances of up to 277 m, and at rates of up to 120 m day^?1, suggesting significant dispersal ability. Larger crayfish moved greater distances and were more likely to move downstream. Female crayfish showed a pattern of upstream movement in early summer and downstream movement late in the summer, opposite the pattern found in two other studies. 5. These results suggest that natural or artificial gradient barriers and, in regulated systems, management of flow regimes to include bankfull or greater flows may help to control invasive crayfish in streams.     

Movements and habitat use by PIT-tagged Atlantic salmon parr in early winter: the influence of anchor ice

1. Movements and habitat use by Atlantic salmon parr in Catamaran Brook, New Brunswick, were studied using Passive Integrated Transponder technology. The fish were tagged in the summer of 1999, and a portable reading system was used to collect data on individual positions within a riffle‐pool sequence in the early winter of 1999. Two major freezing events occurred on November 11–12 (Ice 1) and November 18–19 (Ice 2) that generated significant accumulations of anchor ice in the riffle. 2. Individually tagged parr (fork length 8.4–12.6 cm, n = 15) were tracked from 8 to 24 November 1999. Over this period, emigration (40%) was higher from the pool than from the riffle. Of the nine parr that were consistently located, seven parr moved <5 m up‐ or downstream, and two parr moved more than 10 m (maximum 23 m). Parr moved significantly more by night than by day, and diel habitat shifts were more pronounced in the pool with some of the fish moving closer to the bank at night. 3. During Ice 2, there was relatively little movement by most of the parr in the riffle beneath anchor ice up to 10 cm in thickness. Water temperature was 0.16 °C above the freezing point beneath anchor ice, suggesting the existence of suitable habitats where salmon parr can avoid supercooling conditions and where they can have access to low velocity shelters. To our knowledge, these are the first data on habitat use by Atlantic salmon parr under anchor ice.     

Creation and maintenance of habitat downstream from a weir for the greenside darter, Etheostoma blennioides – a rare fish in Canada

The biology, microhabitat use and migratory behaviour of the greenside darter, Etheostoma blennioides, was studied at the Mannheim Weir on the Grand River, Ontario during the summer of 1995 and 1996. Officially listed as vulnerable in Canada, greenside darters reached maturity at age 1 and lived up to 4 years. They were found in riffle habitats that consisted of cobble and loose boulders, with large mats of Cladophora. This type of unembedded substrate is uncommon in the Grand River watershed. However, local abundance of greenside darters immediately downstream from the Mannheim Weir was likely due to high water velocities from weir discharge, freshets and ice scour which help maintain unembedded riffle areas. Trap data indicated that greenside darters temporally partition this habitat with the stonecat, Noturus flavus. Other darter species were not commonly found in areas with greenside darters, whose depth selection and habitat choices were influenced by predators and morphology. Denil fishways at the Mannheim Weir rarely passed greenside darters due to prohibitively high water velocities and exclusion by larger fish. This revised version was published online in August 2006 with corrections to the Cover Date.     

Influence of riffle characteristics,surficial geology,and natural barriers on the distribution of the channel darter, <Emphasis Type="Italic">Percina copelandi,</Emphasis> in the Lake Ontario basin

Synopsis The channel darter, Percina copelandi, is a small benthic fish with a wide but disjunct distribution across central North America. The development of conservation and recovery strategies for Canadian populations is limited by a lack of knowledge regarding ecology, population size and other factors that affect its distribution and abundance. We sampled five rivers in the Lake Ontario basin to test whether the distribution of P. copelandi reflected riffle habitat characteristics or landscape-scale factors such as surficial geology and natural barriers (waterfalls). At most sites yielding P. copelandi, riffles flowed into deep sand bottomed run or pool habitats. Despite a lack of association with local surficial geology or riffle habitat characteristics, both the upstream limits of P. copelandi occurrence and distribution of suitable habitats reflected the distribution of waterfalls, chutes and bedrock outcroppings. In contrast to P. copelandi, distributions of Etheostoma flabellare, P. caprodes and Rhinichthys cataractae reflected among site differences in riffle habitat.     

The Effects of Road Culverts on Nekton in New England Salt Marshes: Implications for Tidal Restoration

In recent years, salt marsh restoration projects have focused upon restoring hydrology through culvert enlargement to return functional values lost due to reduced tidal flow. To evaluate culvert effects on upstream nekton assemblages, fyke nets were set upstream of tidally restricted creeks, creeks recently restored with larger culverts, and paired reference creeks in New Hampshire and Maine, U.S.A. Subtidal habitats created or enlarged by scour were found immediately upstream of undersized culverts. All marshes supported similar assemblages and densities of fish, suggesting that marshes upstream of moderately restrictive culverts provide suitable habitat to support fish communities. However, densities of Crangon septemspinosa (sand shrimp) were significantly reduced upstream of culverts. A mark–recapture study was conducted in tidally restricted, restored, and reference marsh creeks to evaluate culvert effects on the movement of Fundulus heteroclitus (mummichog), the numerically dominant fish species in New England salt marshes. Recapture data indicated that small culvert size and consequently increased water velocity significantly decreased fish passage rates. We infer that upstream subtidal habitats and greater water velocities due to undersized culverts decreased nekton movements between upstream and downstream areas, resulting in segregated nekton populations. Restoration of salt marsh hydrology by the installation of adequately sized culverts will support increased fish access to marsh habitats and nekton‐mediated export of marsh‐derived production to coastal waters.     

Habitat Selection and Movement of Pond-Breeding Amphibians in Experimentally Fragmented Pine Forests

ABSTRACT Population-level responses of amphibians to forest management regimes are partly dictated by individual behavioral responses to habitat alteration. We examined the short-term (i.e., 24-hr) habitat choices and movement patterns of 3 amphibian species—southern leopard frogs (Rana sphenocephala), marbled salamanders (Ambystoma opacum), and southern toads (Bufo terrestris)—released on edges between forest habitats and recent clear-cuts in the Upper Coastal Plain of South Carolina, USA. We predicted that adult frogs and salamanders would preferentially select forest using environmental cues as indicators of habitat suitability. We also predicted that movement patterns would differ in clear-cuts relative to forests, resulting in lower habitat permeability of clear-cuts for some or all of the species. Using fluorescent powder tracking, we determined that marbled salamanders selected habitat at random, southern toads preferred clear-cuts, and southern leopard frogs initially selected clear-cuts but ultimately preferred forests. Frogs exhibited long-distance, directional movement with few turns. In contrast, toads exhibited wandering behavior and salamanders moved relatively short distances before locating cover. Southern toads and southern leopard frogs moved farther in forests, and all 3 species made more turns in clear-cuts than in forests. Habitat selection by southern toads did not vary according to body size, sex, or the environmental cues we measured. However, marbled salamanders were more likely to enter clear-cuts when soil moisture was high, and southern leopard frogs were more likely to enter clear-cuts when relative humidity and air temperature were higher in the clear-cut than in adjacent forest. Although we found evidence of reduced habitat permeability of clear-cuts for southern leopard frogs and southern toads, none of the species exhibited strong behavioral avoidance of the small (4-ha) clear-cuts in our study. Further studies of long-term habitat use and the potential physiological and other costs to individuals in altered forests are needed to understand the effects of forest management on population persistence. To reduce potentially detrimental effects of clear-cutting on amphibians in the Southeast, wildlife managers should consider the vagility and behavior of species of concern, especially in relation to the size of planned harvests adjacent to breeding sites.     

Modelling patterns of coexistence of three congeneric headwater fishes

1. Mechanisms driving patterns of occurrence and co-occurrence among North American freshwater fishes are poorly understood. In particular, the influence of biotic interactions on coexistence among stream reaches and their effects on regional species distribution patterns is not well understood for congeneric headwater fishes.
2. Occupancy models provide a useful framework for examining patterns of co-occurrence while also accounting for imperfect detection. Occupancy models may be extended to test for evidence that a dominant species influences the occurrence of a subordinate species and thus evaluate support for the hypothesis that species interactions drive patterns of coexistence.
3. We examined patterns of occurrence and co-occurrence at the stream-reach scale among three species of darters (Percidae: Etheostomatinae) that occupy headwater streams within a Gulf Coastal Plain drainage in the south-eastern U.S.A. We assessed species occurrences at 97 sites in first- to third-order streams on one occasion each and used data from four sub-reaches sampled with equal effort at each site to estimate species-specific detection probabilities. Following sampling, a suite of habitat variables was collected at three equidistant points along each of the three transects established within a sub-reach. Coarse (stream-segment, catchment, network) scale variables were also incorporated using geospatial data. Single-species and two-species occupancy models were used to examine patterns of occupancy and coexistence.
4. The occupancy of each species was influenced by distinct habitat variables. Goldstripe darters (Etheostoma parvipinne) were constrained by a stream size gradient, groundwater input appeared to influence the occurrence of Yazoo darters (Etheostoma raneyi), and local habitat heterogeneity (e.g. variation in depth and current velocity) appeared to influence the occupancy of redspot darters (Etheostoma artesiae).
5. We found no evidence that the presence of one species influenced the occurrence of another within a stream-reach based on two-species occupancy models. Rather, species co-occurrences were best explained as independent occurrences within a stream-reach according to species-specific habitat associations.
6. Occupancy modelling may provide a suitable framework for evaluating the influence of biotic interactions among congeneric stream fishes along species-specific habitat gradients at the stream reach scale. Our study offers insight into how habitat variation can influence coexistence of potential competitors across a large river system.

     

Pervasive gene flow across critical habitat for four narrowly endemic,sympatric taxa

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Self-organisation in streams: the relationship between movement behaviour and body condition in a headwater salamander

1. When movement behaviour is correlated with traits affecting fitness, it may affect population performance directly, independent of extrinsic habitat conditions. 2. In a previous 3‐year, capture–recapture study, upstream movement by the salamander Gyrinophilus porphyriticus compensated for low reproduction in the upper 500 m of Merrill Brook, a first‐order stream in northern New Hampshire (U.S.A.). This immigrant subsidy resulted from excess reproduction in the downstream section (i.e. the lower 500 m of stream length) and from consistently upstream‐biased movement by salamanders. Reproduction in the two stream sections was positively correlated with mean body condition. Using 6 years of capture–recapture data, this study examines whether the movement behaviour of G. porphyriticus is related to body condition and thereby directly influences mean body condition and reproduction in the two sections of Merrill Brook. 3. Upstream‐biased movement and greater mean body condition in the downstream section were consistent across 6 years of data collection. In Merrill Brook and four other streams, however, individuals with high body condition were more likely to move upstream and low‐condition individuals were more likely to move downstream. Movement direction was unrelated to the size, sex and initial location of individuals. Body condition was positively related to growth rate, further supporting its link to reproductive potential, and positively autocorrelated through time in individuals that moved. 4. Results of this 6‐year study suggest that the movement behaviour of G. porphyriticus partially compensated for environmental factors differentiating mean body condition and reproduction along Merrill Brook and illustrate the potential for this form of self‐organisation to occur in linear habitats such as streams and rivers.     

Habitat Use of Fish Communities in A Virginia Stream System

Fish habitat use during summer was examined at micro- and meso-levels, to determine species associations in the upper Roanoke River watershed, Virginia. Based on multivariate-mesohabitat analysis and examination of mean microhabitat use, seven habitat-use guilds were apparent. These included four rheophilic (fast-riffle, riffle/run, fast-generalist, and shallow-rheophilic) and three limnophilic guilds (pool/run, open-pool, and pool-cover) that were reasonably robust across two river segments and two years. Although simple-hydraulic, bottom-topographic, and turbulence variables all segregated fish habitat-use guilds, turbulence variables were redundant with simple-hydraulic variables, substratum use by limnophilic fishes was related to availability, and only one guild consistently selected high cover levels. At the family level, suckers, darters, and especially minnows were notable for occupying several habitat-use guilds, because of species differences in habitat preferences. Such formulation of guilds can simplify habitat-impact analyses in biodiverse, warmwater streams, via focus on habitat needs of guilds rather than on individual species.     

Edges in Agricultural Landscapes: Species Interactions and Movement of Natural Enemies

Agricultural landscapes can be characterized as a mosaic of habitat patches interspersed with hostile matrix, or as a gradient of patches ranging from suitable to unsuitable for different species. Arthropods moving through these landscapes encounter a range of edges, with different permeability. Patches of native vegetation in these landscapes may support natural enemies of crop pests by providing alternate hosts for parasitic wasps and/or acting as a source for predatory insects. We test this by quantifying species interactions and measuring movement across different edge-types. A high diversity of parasitoid species used hosts in the native vegetation patches, however we recorded few instances of the same parasitoid species using hosts in both the native vegetation and the crop (canola). However, we did find overall greater densities of parasitoids moving from native vegetation into the crop. Of the parasitoid groups examined, parasitoids of aphids (Braconidae: Aphidiinae) frequently moved from native vegetation into canola. In contrast, parasitoids of caterpillars (Braconidae: Microgastrinae) moved commonly from cereal fields into canola. Late season samples showed both aphids and parasitoids moving frequently out of native vegetation, in contrast predators moved less commonly from native vegetation (across the whole season). The season-long net advantage or disadvantage of native vegetation for pest control services is therefore difficult to evaluate. It appears that the different edge-types alter movement patterns of natural enemies more so than herbivorous pest species, and this may impact pest control services.     

Identifying keystone habitats with a mosaic approach can improve biodiversity conservation in disturbed ecosystems

Conserving native biodiversity in the face of human‐ and climate‐related impacts is a challenging and globally important ecological problem that requires an understanding of spatially connected, organismal‐habitat relationships. Globally, a suite of disturbances (e.g., agriculture, urbanization, climate change) degrades habitats and threatens biodiversity. A mosaic approach (in which connected, interacting collections of juxtaposed habitat patches are examined) provides a scientific foundation for addressing many disturbance‐related, ecologically based conservation problems. For example, if specific habitat types disproportionately increase biodiversity, these keystones should be incorporated into research and management plans. Our sampling of fish biodiversity and aquatic habitat along ten 3‐km sites within the Upper Neosho River subdrainage, KS, from June‐August 2013 yielded three generalizable ecological insights. First, specific types of mesohabitat patches (i.e., pool, riffle, run, and glide) were physically distinct and created unique mosaics of mesohabitats that varied across sites. Second, species richness was higher in riffle mesohabitats when mesohabitat size reflected field availability. Furthermore, habitat mosaics that included more riffles had greater habitat diversity and more fish species. Thus, riffles (<5% of sampled area) acted as keystone habitats. Third, additional conceptual development, which we initiate here, can broaden the identification of keystone habitats across ecosystems and further operationalize this concept for research and conservation. Thus, adopting a mosaic approach can increase scientific understanding of organismal‐habitat relationships, maintain natural biodiversity, advance spatial ecology, and facilitate effective conservation of native biodiversity in human‐altered ecosystems.     

Forests do not limit bumble bee foraging movements in a montane meadow complex

1. Understanding the roles of habitat fragmentation and resource availability in shaping animal movement are integral for promoting species persistence and conservation. For insects such as bumble bees, their movement patterns affect the survival and reproductive potential of their colonies, as well as the pollen flow of plant species. However, the understanding of their mobility or the impact of putative barriers in natural environments is limited due to the technical difficulties of studying wild populations. 2. Genetic mark–recapture was used to estimate the foraging distance, resource use, and site connectivity of two bumble bee species in a montane meadow complex composed of open meadows within a matrix of forest. 3. There was no evidence that forests or changes in landcover function as barriers to the fine-scale movement for either species. Substantially greater colony-specific foraging distances were found for Bombus vosnesenskii (maximum: 1867 m) compared to Bombus bifarius (maximum: 362 m). Despite this difference in absolute range, both species were detected across putative forest barriers at frequencies expected by uninhibited movement. Siblings separated by greater distances were more likely to be foraging on different floral species, potentially suggesting a resource-based motivation for movement. 4. These results suggest that bumble bee foraging patterns are influenced by species-specific differences in movement capacity, with little influence of matrix composition between resource patches. They also support the perspective that habitat conservation for bumble bees should prioritise providing abundant and diverse patches of resources within species-specific movement radii with less emphasis on matrix composition.     

The influence of age-specific habitat selection by a stream crayfish community (<Emphasis Type="Italic">Orconectes</Emphasis> spp.) on secondary production

We examined the hypothesis that secondary production of a community of stream crayfish (Orconectes spp.) depended upon the available suite of channel units (e.g., riffle, run, pool) and that age-specific use of channel units was the important underlying mechanism. Nine cohorts of each of three species over a 10-year period at two sites on the Jacks Fork River, Missouri, USA, were sampled. Cohort-production estimates were calculated for specific channel units: riffles, runs, pools, backwaters and emergent vegetation patches. Orconectes luteus was the most productive species with similar production across channel units. Production of O. ozarkae and O. punctimanus was significantly greater in vegetation patches than other channel units. There were no species by channel unit differences in production between the two sites. Although total site production for some species substantially changed over the 10-year period, relative production differences between habitats remained temporally stable. Differences in mean production between channel units were largely due to age-class habitat use rather than differences related to growth. Some channel units particularly susceptible to common anthropogenic activities that result in hydrograph alterations and homogenization of physical habitat, e.g., backwaters, vegetation patches, and pools, were particularly important as high production areas for two species. A variety of channel units appears necessary for maintaining the high secondary production and diversity of crayfish in this system. Handling editor: D. Dudgeon     

Search mechanism of a stream grazer in patchy environments: the role of food abundance

Summary The search behavior of the grazing stream insect Baetis tricaudatus (Ephemeroptera: Baetidae) was examined in field and laboratory experiments. Regardless of food abundance in experimental habitats, nymphs spent significantly more time in food patches than predicted if they had moved randomly with respect to patches. A significant reduction in movement rate within patches relative to movement rate between patches largely accounted for these results. The movement pattern within patches was highly systematic and in agreement with predictions of optimal foraging theory since food was uniformly distributed within patches. Between-patch search movements were affected by food abundance in the most recently grazed patch. Search intensity after departure from a patch was positively related to food abundance in the patch while movement rate after patch departure was inversely related to patch food level. These effects produced between-patch movement patterns that were suboptimal in the experimental habitats because they resulted in revisitation of previously depleted patches. However, differences between experimental and natural habitats in the spatial occurrence of patch types suggest that Baetis between-patch search behavior may be adaptive in natural habitats.     

Ecology and population structure of the bayou darter, <Emphasis Type="Italic">Etheostoma rubrum</Emphasis>: disjunct riffle habitats and downstream transport of larvae

The bayou darter, Etheostoma rubrum (Percidae), is endemic to the Bayou Pierre system in Mississippi. Adult and juvenile E. rubrum occupy swift, shallow riffles or runs over coarse gravel and pebble substrata. Habitat requirements of larval and post-larval stages, and the role of downstream dispersal of larvae in colonizing riffles are poorly known. The potential for movement and the high level of habitat specificity for the discontinuous riffle habitat suggest that E. rubrum may comprise a metapopulation of linearly arranged local populations. The greatest population densities of E. rubrum occur in the upper reaches of Bayou Pierre. We hypothesized that metapopulation structure of E. rubrum may include source–sink dynamics, whereby downstream areas are a sink for larvae/early juveniles originating upstream. We tested hypotheses that a transport mechanism, larval drift, occurred in E. rubrum, and that downstream riffles showed characteristics of population sinks. We captured larval stages of E. rubrum in cross-sectional and longitudinal drift nets, and rates of drift tended to increase during the day. Larval E. rubrum (n=19) occurred in samples above and below riffle areas, with no differences among longitudinal drift nets placed above and below riffles. Thus, larval drift is a viable transport mechanism. Relative abundance of adults and juveniles declined from upstream to downstream, and inter-riffle distances increased with cumulative downstream distance. However, both predictions of the source–sink hypothesis were not supported. The distribution of size classes did not change between upstream and downstream riffles nor did the mean size-adjusted body mass.     

Gene flow in an endangered willow <Emphasis Type="Italic">Salix hukaoana</Emphasis> (Salicaceae) in natural and fragmented riparian landscapes

Salix hukaoana is an endangered riparian pioneer tree that is distributed within a restricted area of Japan. Microsatellite genetic variations and genetic structures were investigated in 80 subpopulations patchily distributed within five river basins with varying degrees of habitat fragmentation. The correlation between geographic distance and genetic distance based on the Bayesian assignment test was significant across relatively intact riparian habitats, with steeper slopes of regression for more densely grouped subpopulations, suggesting restricted gene flow. However, the correlation became less apparent with increasing spacing of the habitat patches. These contradictory results are attributed to the increased chance of long-distance dispersal of sexual propagules among more isolated habitat patches. The observed accumulation of genetic diversity with increasing distance downstream along a few, but not all, of the rivers and the results of assignment tests suggested a downstream directionality of gene flow. The results of this study illustrate the patterns of genetic diversity and contemporary dispersal of S. hukaoana, and provide important insights into understanding the gene dispersal of riparian trees and into the conservation of genetic resources for this species.     

Migration of moth species in a network of small islands

Rapidly increasing fragmentation of natural landscapes decreases the ability of many species to reach the smaller and more isolated patches of habitat in a metapopulation. The densities of local populations of several moth species and the butterfly Hipparchia semele in a network of small islands, and the rates of inter-island movement and movement patterns, were investigated, to determine the factors affecting the rate and pattern of movements. The estimated population densities ranged from 0.001 to 0.2 individuals/m². The observed emigration and immigration rates depended on island isolation and various traits of the species, with great variability in migration rates among species. Thin-bodied, slow-flying species did not move among the islands, whereas many robust, fast-flying species moved among the islands relatively frequently. Migration rate increased significantly with body size and was significantly higher in oligophagous than in polyphagous species, suggesting that these factors are important determinants of the migration rate of the species. Migration rate was low when the surface temperature of the sea was low, and a greater proportion of individuals emigrated from small than large patches of habitat. The migration distances of female noctuids were shorter than those of males and those of both sexes of the butterfly H. semele. The observed movement patterns are consistent with a metapopulation structure in most of the moth species.