与植物共生的难培养菌物及其培养特性研究进展

与植物共生难培养菌物的分类地位与生活史复杂多样,与植物共生程度各异。在其他一定种类生物(如植物、细菌等)存在的条件下,大多与植物共生难培养菌物能完成生活史,而且一些非专性非活体营养的共生菌物较专性活体营养的共生菌物更容易获得纯培养。在简要介绍与植物共生难培养菌物分类地位、生活史与共生类型的基础上,重点探讨了与植物共生难培养菌物的培养特性和培养方法,并讨论了该领域的研究动向与展望,旨在为当前和今后开展难培养菌物纯培养研究提供思路、依据和工作基础。     

Animated visualization of a high resolution color three dimensional digital computer model of the whole human head

The interactive visualization of animated images through a computerized three dimensional (3D) full color model of an unstained cadaveric human head is presented. Serial full color images were taken of the blockface of a cryomicrotomed frozen human head every 200 μm. From this series of images a three dimensional digital model with a resultant pixel resolution of 200 μm³ was created on a UNIX workstation. Using this database, resampled images were computed along orthogonal axes and written sequentially to a write-once-read-many times (WORM) videodisc unit. Playback of this customized videodisc dataset provides animations of the digitally reconstructed slices and 3D reconstructed surface models. An interactive interface to the animated sequences is provided through a PC based tutorial package. This tutorial program is able to access videodisc frames to display animations and labeled still images in a software window to illustrate various neuroanatomic topics. The technique of animation as applied to this high resolution 3D model provides insight into complex spatial relationships and has great potential in research and as a teaching tool in the neurosciences.     

Sex, outcrossing and mating types: unsolved questions in fungi and beyond

Variability in the way organisms reproduce raises numerous, and still unsolved, questions in evolutionary biology. In this study, we emphasize that fungi deserve a much greater emphasis in efforts to address these questions because of their multiple advantages as model eukaryotes. A tremendous diversity of reproductive modes and mating systems can be found in fungi, with many evolutionary transitions among closely related species. In addition, fungi show some peculiarities in their mating systems that have received little attention so far, despite the potential for providing insights into important evolutionary questions. In particular, selfing can occur at the haploid stage in addition to the diploid stage in many fungi, which is generally not possible in animals and plants but has a dramatic influence upon the structure of genetic systems. Fungi also present several advantages that make them tractable models for studies in experimental evolution. Here, we briefly review the unsolved questions and extant hypotheses about the evolution and maintenance of asexual vs. sexual reproduction and of selfing vs. outcrossing, focusing on fungal life cycles. We then propose how fungi can be used to address these long-standing questions and advance our understanding of sexual reproduction and mating systems across all eukaryotes.     

Validation of 2D‐animated pictures as an investigative tool in the behavioural sciences: A case study with a West African cichlid fish,Pelvicachromis pulcher

Virtual stimuli represent an increasingly popular tool in the study of animal behaviour. Modern techniques have the potential to simplify and improve traditional experiments using live stimuli. However, the increasing availability of diverse techniques is associated with problems and limitations. Although many new methods have been developed, their validation remains largely untested. In the present study, we therefore performed two experiments to test whether 2‐D animations of predators and conspecifics elicit biologically appropriate behavioural responses in male rainbow kribs, Pelvicachromis pulcher. Individual responses towards a sympatric natural fish predator, Parachanna obscura, were tested using live predators and still colour photographs, animated using PowerPoint©. Compared to control trials (empty aquarium and white computer screen, respectively), individuals decreased their activity in response to both live and animated predators. We found no difference in activity between live and animation trials. Further, we tested individual aggression (frequency of aggressive behaviours) exhibited towards live and animated conspecifics. Individual aggressive behaviours shown towards live and animated conspecifics were positively correlated. Moreover, an individual's mean distance towards the opponent was a suitable proxy for individual aggression permitting the facilitation and standardisation of an individual's aggression through the use of a tracking software compared with the more laborious, traditional manual assessment. Our results show that simple, inexpensive animation techniques have the potential to provide an easy‐to‐apply and useful technological advance in animal behaviour research.     

Meeting a non-host: the behaviour of AM fungi

 Arbuscular mycorrhizal (AM) fungi are obligately biotrophic organisms that live symbiotically with the roots of most plants. The establishment of a functional symbiosis between AM fungi and host plants involves a sequence of recognition events leading to the morphological and physiological integration of the two symbionts. The developmental switches in the fungi are triggered by host signals which induce changes in gene expression and a process leading to unequivocal recognition between the two partners of the symbiosis. It has been calculated that about 80% of plant families from all phyla of land plants are hosts of AM fungi. The remaining plant species are either non-mycorrhizal or hosts of mycorrhizas other than the arbuscular type. Non-host plants have been used to obtain information on the factors regulating the development of a functional symbiosis. The aim of this present review is to highlight present-day knowledge of the fungal developmental switches involved in the process of host/non-host discrimination. The following stages of the life cycle of AM fungi are analysed in detail: spore germination, presymbiotic mycelial growth, differential branching pattern and chemotropism, appressorium formation, root colonization. Accepted: 17 June 1998     

Genetic evidence for sexual reproduction and multiple infections of Norway spruce cones by the rust fungus Thekopsora areolata

Rust fungi are obligate parasites, of plants, with complex and in many cases poorly known life cycles which may include host alteration and up to five spore types with haploid, diploid, and dikaryotic nuclear stages. This study supports that Thekopasora areolata, the causal agent of cherry‐spruce rust in Norway spruce, is a macrocyclic heteroecious fungus with all five spore stages which uses two host plants Prunus padus and Picea abies to complete its life cycle. High genotypic diversity without population structure was found, which suggests predominantly sexual reproduction, random mating and a high gene flow within and between the populations in Fennoscandia. There was no evidence for an autoecious life cycle resulting from aeciospore infection of pistillate cones that would explain the previously reported rust epidemics without the alternate host. However, within cones and scales identical multilocus genotypes were repeatedly sampled which can be explained by vegetative growth of the fertilized mycelia or repeated mating of mycelium by spermatia of the same genotype. The high genotypic diversity within cones and haplotype inference show that each pistillate cone is infected by several basidiospores. This study provides genetic evidence for high gene flow, sexual reproduction, and multiple infections of Norway spruce cone by the rust fungus T. areolata which expands the general understanding of the biology of rust fungi.     

Sexual reproduction is the null hypothesis for life cycles of rust fungi

Sexual reproduction, mutation, and reassortment of nuclei increase genotypic diversity in rust fungi. Sexual reproduction is inherent to rust fungi, coupled with their coevolved plant hosts in native pathosystems. Rust fungi are hypothesised to exchange nuclei by somatic hybridisation with an outcome of increased genotypic diversity, independent of sexual reproduction. We provide criteria to demonstrate whether somatic exchange has occurred, including knowledge of parental haplotypes and rejection of fertilisation in normal rust life cycles.     

通识教育中融入人类遗传学的教学实践

通识教育已经成为大学高等教育的重要组成部分,强调通专结合的办学理念,要求践行“以人为本”的教育实践。在教学实践中存在不少困难和困惑,需要不断总结和发展中国特色的通识教育体系。本文凝练了在人类生物学教学实践中如何融入人类遗传学知识的通识教学理念、案例和分析,以“人是什么”为切入点引入贴近生活的教学内容。通过现代进化基因组学知识,解析人类自身发展的过去、现在和未来所涉及的生物学核心问题。剖析人的经典属性及其与通识教育的特殊关联,进而引出基于问题的深层次思考。     

The evolution of life cycles with haploid and diploid phases

Sexual eukaryotic organisms are characterized by an alternation between haploid and diploid phases. In vascular plants and animals, somatic growth and development occur primarily in the diploid phase, with the haploid phase reduced to the gametic cells. In many other eukaryotes, however, growth and development occur in both phases, with substantial variability among organisms in the length of each phase of the life cycle. A number of theoretical models and experimental studies have shed light on factors that may influence life cycle evolution, yet we remain far from a complete understanding of the diversity of life cycles observed in nature. In this paper we review the current state of knowledge in this field, and touch upon the many questions that remain unanswered. BioEssays 20 :453–462, 1998. © 1998 John Wiley & Sons, Inc.     

A game to teach the life cycles of fungi

Three difficulties encountered by students studying the life cycles of fungi are discussed: (a) Correlating photomicrographs, which sometimes include artefacts, with schematic drawings; (b) Correlating the life cycles of parasitic fungi with those of their hosts and the symptoms of fungal disease; (c) Understanding the cyclic development of fungi, which may have alternating micro- and macro-cycles. A game, developed to help students to overcome these difficulties, is described. Pictures of fungi, as seen by students through microscopes and in their textbooks, have to be correlated in the game with drawings of the fungi. An identification sheet allows students to check their results. Students then have to place cards, on which there are drawings of the different stages in the development of various fungi and their hosts, on a board, so that the parallel stages of host and parasite are next to each other and the photomicrograph drawings form a cycle. In the case of rusts, two cycles have to be produced, and two hosts have to be positioned correctly in the cycles. The game also provides cards to mark seasons and a solution sheet for self-evaluation.     

The archeoviruses

Since their discovery in the early 1980s, viruses that infect the third domain of life, the Archaea, have captivated our attention because of their virions' unusual morphologies and proteins, which lack homologues in extant databases. Moreover, the life cycles of these viruses have unusual features, as revealed by the recent discovery of a novel virus egress mechanism that involves the formation of specific pyramidal structures on the host cell surface. The available data elucidate the particular nature of the archaeal virosphere and shed light on questions concerning the origin and evolution of viruses and cells. In this review, we summarize the current knowledge of archeoviruses, their interaction with hosts and plasmids and their role in the evolution of life.     

昆虫数字化博物馆的建设

数字化博物馆是博物馆现代化的一个重要标志。国外博物馆从20世纪90年代就开始进行数字化建设,国内的博物馆数字化建设起步较晚,同国外的先进技术相比还有一定的差距,但发展较快。目前,国内外已有的昆虫数字化博物馆各具特色,有以展示昆虫图片为主的,有以介绍昆虫知识为主的,也有以营利为目的的,但仍有不少需要改进的地方。为了满足中小学生的求知欲和探索欲,适应他们喜欢自己动手操作和活泼好动的性格,昆虫数字化博物馆网站建设在技术上应采用J2EE三层体系结构,采用动态网站内容管理与发布系统构建的后台管理系统,将昆虫数字化博物馆分成后台管理和前台展示与交互两部分,从而实现网站内容与表现形式的分离,加快网页更新的速度。在数据库建设上,应采用功能强大的数据库软件,以满足大量图片、声音、动画、视频等多种类型的数据库的有效存储和高效的检索功能。在网站的内容上应有实体展厅的数字化、昆虫学术交流与知识集锦、中小学生互动教育等板块。在网站的后期维护上应做到由全社会的昆虫爱好者共同维护和管理。     

Animals (Animalia) in the system of organisms. 1. Typological systems

Since times of Aristotle animals were considered as a group, opposing to plants. The last were distinguished by two characters. Plants as distinct from animals live the attached way of a life and all nutrients receive from a substratum on which live and from the surrounding air. Animals live an active way of life and exist due to digestion. Fungi at such definition belong to plants. Only in second half of XX centuries due to works of Whittaker and of Tachtadjan fungi have received the separate status equally with plants and animals. In this new system of a plant embraced either oxygenic phototrophs, or photosynthetic eukaryotes. The traditional characters distinguishing animals from plants and fungi are in detail analysed. Many of them appeared formal, not reflecting the structure of relationship. Comparing heterotrophs some authors saw in absorptive nutrition the main difference of fungi from animals. However on mechanisms of receipt of substances in a cell fungi, animals and plants do not differ. Phagocytosis and pinocytosis (clathrin-mediated endocytosis), considered as the most characteristic feature of animals, are revealed both in fungi, and in plants. On photosynthetic activity plants form heterogeneous group, differing on primary and secondary plastids. The last besides have the various origin connected to symbiogenesis of the host cell with red or green algae. Heterotrophy cannot be considered as a uniting attribute of fungi and animals. It is essentially different and focused on diverse food sources. Evolution of animals is connected to perfection of structure of a plasmatic membrane and saturation by its molecules allowing a cell, and through it all organism to be guided in an environment and adequally to be up to external irritants. At a cellular level animals use the various mechanisms of cellular activity connected to moving of cells, their combination in aggregates and complexes or, on the contrary, separation in new cellular configurations. The complex of cellular adaptations connected to the analysis of external signals and adequate response to them of cells, underlies the phenomenon of irritability. At a cellular level irritability is mediated through work of the actin apparatus. Lamarck in "Philosophie zoologique" considered irritability as the main distinctive feature of animals. Evolution of plants and fungi went in a direction of development of a secondary metabolism. The secondary metabolism, concerning synthesis of protective substances, is peculiar to all sedentary organisms, including the animals.     

Evolution of multicopper oxidase genes in coprophilous and non-coprophilous members of the order sordariales

Multicopper oxidases (MCO) catalyze the biological oxidation of various aromatic substrates and have been identified in plants, insects, bacteria, and wood rotting fungi. In nature, they are involved in biodegradation of biopolymers such as lignin and humic compounds, but have also been tested for various industrial applications. In fungi, MCOs have been shown to play important roles during their life cycles, such as in fruiting body formation, pigment formation and pathogenicity. Coprophilous fungi, which grow on the dung of herbivores, appear to encode an unexpectedly high number of enzymes capable of at least partly degrading lignin. This study compared the MCO-coding capacity of the coprophilous filamentous ascomycetes Podospora anserina and Sordaria macrospora with closely related non-coprophilous members of the order Sordariales. An increase of MCO genes in coprophilic members of the Sordariales most probably occurred by gene duplication and horizontal gene transfer events.     

Forty-five years later: The shifting dynamic of traditional ecological knowledge on Pantelleria Island,Italy

In 1969, Galt and Galt conducted an ethnobotanical survey in the community of Khamma on the volcanic island of Pantelleria, Italy. Since then, a number of botanical studies concerning the local wild flora and cultivation of the zibibbo grape and capers have been conducted, but none have investigated traditional ecological knowledge (TEK) regarding the use of wild plants and fungi. We documented the current TEK and practices concerning wild plants and fungi on the island, focusing on uses related to food and medicine with 42 in-depth interviews in six communities in June 2014. Our aim was to examine shifts in TEK, represented in terms of loss or gain of specific species uses, in comparison to the 1969 study. All interviews were conducted in person in Italian with prior informed consent. We employed two primary means of eliciting responses concerning traditional practices; informants were asked to: 1) free-list the most commonly used plants for wild foods, general medicine, and skin remedies; and 2) view and discuss a booklet composed of photos of species reported in the Galt and Galt study. In total, 86 botanical and 19 fungal species representing 53 families were cited. While many plant-based traditions have disappeared from daily practice, especially those related to traditional fishing and hunting, they remain in the memories of the eldest subset of the population. For example, one of the most pervasive species in the landscape, Opuntia ficus-indica, has current day uses that persist as a food source, but its past applications were much more diverse, and included manipulation into hunting snares for birds. Other predominant flora included a number of Euphorbia spp., whose toxic latex was regularly used as a fish poison. Fungi, on the other hand, nowadays represent an important source of wild food. In conclusion, we documented a decline in knowledge and practice of TEK related to ritual healing, livestock rearing, hunting and fishing practices and an increase in TEK concerning newly introduced edible fungi.     

菌物在森林生态系统中的功能和作用研究进展

 综述了菌物在森林生态系统中的功能和作用方面的研究进展,表明菌物是森林生态系统中不可忽视的重要组成部分,对森林生态系统的建立、演替、稳定、物质循环和能量流动等都具有重要的影响。菌物与植物的共生是植物起源和森林形成的基础,而且是森林健康发展的关键;菌物在森林中的分解作用和对土壤母岩的风化作用是生物地球化学循环的重要环节,且菌体本身是森林中的主要碳、氮汇成员;菌物多样性是森林物种多样性和生态稳定的决定因素之一,其多样性的丧失可以直接影响森林的生态系统乃至加剧地球的大气温室效应。菌物在我国森林保护和可持续发展以及生态环境建设上具有重要的位置。     

Sexual selection in fungi

The significance of sexual selection, the component of natural selection associated with variation in mating success, is well established for the evolution of animals and plants, but not for the evolution of fungi. Even though fungi do not have separate sexes, most filamentous fungi mate in a hermaphroditic fashion, with distinct sex roles, that is, investment in large gametes (female role) and fertilization by other small gametes (male role). Fungi compete to fertilize, analogous to ‘male‐male’ competition, whereas they can be selective when being fertilized, analogous to female choice. Mating types, which determine genetic compatibility among fungal gametes, are important for sexual selection in two respects. First, genes at the mating‐type loci regulate different aspects of mating and thus can be subject to sexual selection. Second, for sexual selection, not only the two sexes (or sex roles) but also the mating types can form the classes, the members of which compete for access to members of the other class. This is significant if mating‐type gene products are costly, thus signalling genetic quality according to Zahavi's handicap principle. We propose that sexual selection explains various fungal characteristics such as the observed high redundancy of pheromones at the B mating‐type locus of Agaricomycotina, the occurrence of multiple types of spores in Ascomycotina or the strong pheromone signalling in yeasts. Furthermore, we argue that fungi are good model systems to experimentally study fundamental aspects of sexual selection, due to their fast generation times and high diversity of life cycles and mating systems.     

泛素化修饰与植物免疫应答

植物暴露在细菌、病毒和真菌等病原微生物环境中,病虫害是限制农作物产量和品质的主要因素,而植物病虫害的防治依赖于对植物抗病机制的深入认识。近年来的研究表明,蛋白质泛素化广泛地参与植物防御调节。蛋白质泛素化是真核生物中重要的翻译后修饰方式之一,在植物中,泛素化修饰在多种信号传导途径中发挥作用,如激素、光、糖应答,发育调节和病原菌防御信号途径等。综述了蛋白质泛素化修饰在植物免疫应答中的调控作用。     

What has happened to the “aquatic phycomycetes” (sensu Sparrow)? Part II: Shared properties of zoosporic true fungi and fungus-like microorganisms

Many species of zoosporic heterotrophic parasites, saprotrophs and mutualists in the Phyla Perkinsozoa (dinoflagellates), Oomycota, Hyphochytriomycota, Labyrinthulomycota and Phyomyxea share morphological characteristics with zoosporic true fungi especially with some of the Chytridiomycota and with fungus-like organisms in the Phyla Mesomycetozoea, Chytridiomycota and Aphelidae. These characteristics include chemotactic motile zoospores, zoosporangia which produce zoospores, thick walled resistant cysts, rhizoid-like structures, hyphal-like structures and cell walls surrounding the cells in several phases of their life cycle. These assemblages also inhabit both marine and freshwater ecosystems in which aquatic fungi and fungus-like organisms are found, have similar life cycles, grow on similar substrates, use similar infection strategies and infect some of the same host plants and animals. Many of these species were once included in the aquatic phycomycetes, an ecological assemblage of microorganisms but not a valid taxonomic group. Some of the shared characteristics are discussed in this review.     

Deceleration of fusion-fission cycles improves mitochondrial quality control during aging

Mitochondrial dynamics and mitophagy play a key role in ensuring mitochondrial quality control. Impairment thereof was proposed to be causative to neurodegenerative diseases, diabetes, and cancer. Accumulation of mitochondrial dysfunction was further linked to aging. Here we applied a probabilistic modeling approach integrating our current knowledge on mitochondrial biology allowing us to simulate mitochondrial function and quality control during aging in silico. We demonstrate that cycles of fusion and fission and mitophagy indeed are essential for ensuring a high average quality of mitochondria, even under conditions in which random molecular damage is present. Prompted by earlier observations that mitochondrial fission itself can cause a partial drop in mitochondrial membrane potential, we tested the consequences of mitochondrial dynamics being harmful on its own. Next to directly impairing mitochondrial function, pre-existing molecular damage may be propagated and enhanced across the mitochondrial population by content mixing. In this situation, such an infection-like phenomenon impairs mitochondrial quality control progressively. However, when imposing an age-dependent deceleration of cycles of fusion and fission, we observe a delay in the loss of average quality of mitochondria. This provides a rational why fusion and fission rates are reduced during aging and why loss of a mitochondrial fission factor can extend life span in fungi. We propose the 'mitochondrial infectious damage adaptation' (MIDA) model according to which a deceleration of fusion-fission cycles reflects a systemic adaptation increasing life span.