Ixodes philipi (Acari: Ixodidae): phylogenetic status inferred from mitochondrial cytochrome oxidase subunit I gene sequence comparison

Ixodes philipi ticks were collected from the nest burrows of streaked shearwaters, Calonectris luecomelas, on 3 different islands of Japan (Awashima: 38 degrees 45'N, 139 degrees 24'E; Mikurajima: 33 degrees 52'N, 139 degrees 36'E; and Omorijima: 36 degrees 8'N, 133 degrees 10'E). The mitochondrial cytochrome oxidase subunit I (COI) gene sequence was determined for each tick. The COI sequences of 9 other ixodid tick species also were determined, and they were used for taxonomic positioning of I. philipi. A metastriata tick, Amblyomma triguttatum, was used as an outgroup reference for the analysis. Phylogenetic examination indicated that the I. philipi ticks are on the branch with Ixodes turdus and Ixodes acutitarsus weakly, and the bootstrap value of this branching was low. Three different analyses, maximum parsimony, genetic distance, and maximum likelihood, support this conclusion. To further refine this analysis, 2761 base pairs (bp) of sequence, which included the genes for tRNA(Met), NADH dehydrogenase subunit 2 (ND2), tRNA(Trp), tRNA(Cys), tRNA(Tyr), and COI, were determined and compared for 6 I. philipi ticks from the 3 different collection sites. Although a base substitution (T to C in the ND2 gene for an Awashima tick) and 2 transitions (G to A in the COI gene for 1 Omorijima tick) have occurred, the overall sequences were highly conserved. Preserved mitochondrial sequences in the ticks from 3 widely separated locations suggest the possibility of gene flow, which was probably accomplished by migratory seabirds.     

Variation in the Microbiota of Ixodes Ticks with Regard to Geography,Species, and Sex

Ixodes scapularis is the principal vector of Lyme disease on the East Coast and in the upper Midwest regions of the United States, yet the tick is also present in the Southeast, where Lyme disease is absent or rare. A closely related species, I. affinis, also carries the pathogen in the South but does not seem to transmit it to humans. In order to better understand the geographic diversity of the tick, we analyzed the microbiota of 104 adult I. scapularis and 13 adult I. affinis ticks captured in 19 locations in South Carolina, North Carolina, Virginia, Connecticut, and New York. Initially, ticks from 4 sites were analyzed by 454 pyrosequencing. Subsequently, ticks from these sites plus 15 others were analyzed by sequencing with an Illumina MiSeq machine. By both analyses, the microbiomes of female ticks were significantly less diverse than those of male ticks. The dissimilarity between tick microbiomes increased with distance between sites, and the state in which a tick was collected could be inferred from its microbiota. The genus Rickettsia was prominent in all locations. Borrelia was also present in most locations and was present at especially high levels in one site in western Virginia. In contrast, members of the family Enterobacteriaceae were very common in North Carolina I. scapularis ticks but uncommon in I. scapularis ticks from other sites and in North Carolina I. affinis ticks. These data suggest substantial variations in the Ixodes microbiota in association with geography, species, and sex.     

Variation in metabolic rate between populations of a geographically widespread lizard

In geographically widespread ectotherms, variation in life history phenotypes may be caused by differences in maintenance metabolism of individuals. I estimated daily and annual maintenance metabolism of eastern fence lizards, Sceloporus undulatus, from two populations with markedly different life histories; lizards in South Carolina grow faster, mature earlier, and have greater annual reproductive output than lizards in New Jersey. I measured diel cycles of resting metabolic rate (RMR) at four temperatures (20 degrees, 30 degrees, 33 degrees, and 36 degrees C) during spring, summer, and fall. In all seasons, RMR increased significantly from 20 degrees to 33 degrees C but did not differ significantly between 33 degrees and 36 degrees C. Adults from New Jersey had a higher RMR than adults from South Carolina in summer and fall but not in spring. Juveniles from South Carolina had a higher RMR than juveniles from New Jersey in summer but not in spring or fall. Annual maintenance metabolism of New Jersey lizards (53.7 kJ) was greater than that of South Carolina lizards (45.8 kJ), despite the shorter duration of activity in New Jersey. I conclude that the difference in maintenance metabolism between populations contributes to the greater production by S. undulatus in South Carolina.     

Major histocompatibility complex variation in red wolves: evidence for common ancestry with coyotes and balancing selection

We examined variation at a class II major histocompatibility complex (MHC) gene (DRB1) in the captive red wolf population and samples of coyotes from Texas and North Carolina. We found 4 alleles in the 48 red wolves, 8 alleles in the 10 coyotes from Texas and 15 alleles in the 29 coyotes from North Carolina. Two of the four alleles found in red wolves, Caru-2 and Caru-4, were found in both the Texas and North Carolina coyote samples. Allele Caru-1, previously found in gray wolves, was also found in the North Carolina sample. The most frequent red wolf allele, Caru-3, was not found in any of the coyote samples. However, an allele found in both the Texas and North Carolina coyote samples is only one nucleotide (one amino acid) different from this red wolf allele. Overall, it appears from examination of this MHC gene that red wolves are more closely related to coyotes than to gray wolves. There were a number of different types of evidence supporting the action of balancing selection in red wolves. Namely, there was: (i) an excess of heterozygotes compared with expectations; (ii) a higher rate of nonsynonymous than synonymous substitution for the functionally important antigen-binding site positions; (iii) an eight times higher average heterozygosity of individual amino acids at the positions identified as part of the antigen-binding site than those not associated with it; (iv) the amino acid divergence of four red wolf alleles was greater than that expected from a simulation of genetic drift; and (v) the distribution of alleles, and the distributions of amino acids at many positions were more even than expected from neutrality. Examination of the level and pattern of linkage disequilibria between pairs of sites suggest that the heterozygosity, substitution and frequencies at individual amino acids are not highly dependent upon each other.     

High genetic diversity, large inter-oceanic divergence and historical demography of the striped mullet

The striped mullet Mugil cephalus , L. is a circumtropical species whose extreme conservative morphology stands in contrast with the degree of genetic differentiation at a global scale. One hundred and fourteen mitochondrial control region DNA sequences were analysed from four localities in the Gulf of Mexico (Texas, Louisiana, Mississippi, Florida), one on the U.S.A. east coast (N. Carolina), and one in Hawaii, giving very high levels of molecular diversity ( h =1·0 every haplotype was unique in all samples, π=1·1–2·0% in Gulf–Atlantic and π=3·1% in Hawaii). With no genetic evidence of dramatic population expansions, mismatch distributions were still very different in each ocean. Stable population levels in Hawaii have fostered the generation and persistence of very high molecular diversity, but Gulf–Atlantic samples suggest a shorter span of population stability. Ninety-five per cent of the molecular variance was allocated between ocean basins and virtually none among Gulf–Atlantic samples. A neighbourjoining reconstruction revealed Atlantic- and Pacific-specific lineages separated by more than 24% uncorrected sequence divergence ( d =0·49 Tamura-Nei Gamma-corrected). The lack of phylogeographic structure among Gulf–Atlantic samples corroborated the AMOVA results and supported the existence of a single population with high levels of gene flow along the Gulf of Mexico and north-west Atlantic coasts. The genetic differentiation between oceans points to the absence of gene flow and an accelerated rate of mitochondrial evolution in the genus Mugil .     

Identification of the Coxiella sp. detected from Haemaphysalis longicornis ticks in Korea

Two Haemaphysalis longicornis ticks were found positive in PCR assay of com-1 gene to detect Coxiella burnetii DNA from 100 ticks. The nucleotide sequences of com-1 and 16S rRNA gene were determined from 2 ticks and compared with those of other C. burnetii strains. The results suggest that H. longicornis harbor Coxiella sp. bacteria in Korea. Furthermore, icd, cbhE', and cbbE' genes are C. burnetii specific genes whereas com-1 gene is Coxiella genus specific gene. This study gives the first documentation to prove the existence of Coxiella sp. in tick collected in Korea.     

First detection of Rickettsia in soft-bodied ticks associated with seabirds, Japan

Rickettsia was first detected in seabird soft-bodied ticks, Carios capensis and C. sawaii in Japan. According to sequence analysis, Rickettsia in Japan was identical to Rickettsia scc31 in C. capensis in the U.S.A. This suggested that an environmental circulation had consisted among microorganisms, ticks and long distance migratory seabirds around the Pacific Ocean.     

Drought-induced in vivo synthesis of camptothecin in Camptothecaacuminata seedlings

Biosynthesis of secondary metabolites may be affected by environmental stimuli. In the present work, the effect of drought on the levels of an indole alkaloid (camptothecin [CPT]) in Camptotheca acuminata seedlings was investigated. Three seed sources, one from its native habitat in China and two from earlier introductions to the United States, in Texas and South Carolina, were used to compare response patterns. Progressive drought stress significantly reduced biomass production in the 3 seed sources of C. acuminata . Stomatal conductance closely followed the drought cycles, indicating the stress levels experienced by the plants. Leaf CPT concentrations showed a strong increase in the initial drought cycle in all seed sources except Texas, but they deviated in the second drought cycle, in which the South Carolina source continued to increase, whereas the Chinese and Texas seed sources decreased. CPT was inducible by drought, but the sustainability of the drought effect on leaf CPT concentrations was low and varied among seed sources.     

Connectivity in piping plovers: Do breeding populations have distinct winter distributions?

Resightings of uniquely marked birds from 2001 to 2008 were used to determine winter distributions of 4 breeding populations of a species at risk, the piping plover (Charadrius melodus). Although considerable overlap exists, a distinct pattern in winter distributions was evident. Birds originating from eastern Canada wintered farthest north compared to other populations. Most individuals from the United States Great Lakes were found in South Carolina and Georgia in winter, whereas birds from eastern Canada were found primarily in North Carolina. Although the great majority of birds marked in Prairie Canada were observed wintering in Texas, particularly southern Texas, breeding plovers from the United States Great Plains were more widely distributed on the gulf coast from Florida to Texas. Very few large-scale movements of individuals in winter were reported either within or between years. This study highlights the significance of geographic regions for eastern Canada, the United States Great Lakes, the United States Great Plains, and Prairie Canada populations, and demonstrates relatively high winter site fidelity. This information will help focus conservation efforts for specific breeding populations during the winter. © 2011 The Wildlife Society.     

Mobility of Two Optional G + C-Rich Clusters of the Var1 Gene of Yeast Mitochondrial DNA

Yeast mtDNA contains two different kinds of mobile optional sequences, two group I introns and a short G + C-rich insertion to some var1 genes. Movement of each element in crosses has been called gene conversion though little is known about the mechanism of G + C cluster conversion. A new allele of the var1 gene found in mtDNA of Saccharomyces capensis is described that permitted a more detailed comparison between intron mobility and G + C cluster conversion. The S. capensis var1 gene lacks the cc+ element present in all S. cerevisiae var 1 genes and the previously described optional a+ element. In crosses with cc+ a- and cc+ a+ S. cerevisiae strains, both clusters were found to be mobile and, in the latter cross, appear to convert independently and only to homologous insertion sites. No evidence for flanking marker coconversion (a hallmark feature of intron conversion) was obtained despite the availability of nearby physical markers on both sides of cluster conversion sites. These data indicate that G + C cluster conversion has only a superficial resemblance to intron mobility; analogies to procaryotic transposition mechanisms are considered.     

The isolation of Saumarez Reef virus, a new flavivirus, from bird ticks Ornithodoros capensis and Ixodes eudyptidis in Australia.

Strains of a new flavivirus, for which the name Saumarez Reef Virus is proposed, were isolated from seabird ticks collected from four localities. Two strains were isolated from ticks of the species Ornithodoros capensis Neumann 1901 collected from the nests of Sooty Terns, Sterna fuscata Linnaeus 1766 on coral cays off the east coast of Queensland, Australia. The other three strains were isolated from ticks of the species Ixodes eudyptidis Maskell 1885 taken from two dead Silver Gulls Larus novaehollandiae Stephens 1826 in northern Tasmania. The new virus was compared serologically with 50 other flaviviruses at the Yale Arbovirus Research Unit and was found to be most closely related to Tyuleniy virus.     

Caloglossa intermedia, sp. nov. (Rhodophyta) from the western atlantic coast: molecular and morphological analyses with special reference to C. leprieurii and C. monosticha

Caloglossa intermedia , sp. nov. is described from estuaries and salt marshes of Atlantic North America. This species is related to C. leprieurii (Montagne) G. Martens based on the position of rhizoids, whereas it is more similar to C. monosticha Kamiya in the number of cell rows at the nodes. Rhizoidal development of this alga also shows an intermediate characteristic between C. leprieurii and C. monosticha. Crosses were successful between the strains of C. intermedia from Georgia and South Carolina, but neither strain was interfertile with morphologically related species. C. intermedia from Georgia, New Jersey, and South Carolina had identical DNA sequences in the Rubisco spacer and flanking regions of rbc L and rbc S. This alga was more closely related to C. leprieurii in a molecular phylogenetic analysis. The evolution of each morphological character is discussed.     

Spatial and temporal predictability of the parasite community structure of a benthic marine fish along its distributional range

The search for consistent patterns of organisation in parasite communities remains a central theme in parasite community ecology. However, to date, much evidence comes from studies without replication in both space and time; when replicate communities are examined, repeatable patterns are rarely observed. Here we determine, using nested subset analyses, whether the infracommunities of ectoparasites and endoparasites of a benthic marine fish (Sebastes capensis) show non-random structure. Then we examine the spatial repeatability of parasite community structure across the host's distribution in the southern Pacific, and the temporal repeatability of ectoparasite community structure from one locality. In total, 537 fish were captured from different latitudes (between 11 degrees S and 52 degrees S) along the Pacific coast of South America; a further 122 specimens were captured in two other years from one of the sampling localities, Valdivia (40 degrees S). In spite of variation in fish sizes among samples, fish size generally did not correlate with either ecto- or endoparasite species richness. The ecto- and endoparasite species richness of the component communities were also not correlated with fish sample size across the nine localities. Significant nested patterns were found in the ectoparasite communities of S. capensis at all eight localities, except at latitude 52 degrees S. Significant nested patterns were also found in the endoparasite infracommunities of S. capensis at seven of the nine localities, the exceptions being those from latitudes 11 degrees S and 20 degrees S. On a temporal scale, significant nestedness was observed in the ectoparasite infracommunities of S. capensis during each of the 3 years of sampling at Valdivia. In general, the same parasite species are responsible for the repeatability of nested patterns, though their importance varies among localities. The spatial and temporal predictability of the parasite community structure in S. capensis may be associated with the fish's benthic habitat and territorial behavior, suggesting that host biology may be a key determinant of the structure of parasite communities.     

Densities of the arundo wasp,Tetramesa romana (Hymenoptera: Eurytomidae) across its native range in Mediterranean Europe and introduced ranges in North America and Africa

Tetramesa romana is a biological control agent of the giant reed, Arundo donax (Poaceae: Arundinoideae), which is an invasive weed in the riparian habitats of the Rio Grande Basin of Texas, the southwestern U.S.A. and northern Mexico. Field evaluations were conducted in the native range of T. romana in Mediterranean Europe and in the introduced ranges of Texas, California, and South Africa to compare densities of the wasp. Population densities and percentage parasitism levels for the 2017 year are compared to meteorological variables (average temperature, precipitation, and heat units). In the introduced ranges of Texas (intentional) and South Africa (adventive) T. romana population densities were 39 and 10-fold higher than in the native range, respectively. Percentage parasitism of T. romana in Texas and in the native range of Thessaloniki, Greece were 2.0% and 34.3%, respectively. Annual heat unit accumulation was 1.3–2.7-fold higher at Texas sites than at other introduced or native sites, and heat units were positively associated with exit hole counts at introduced sites. Annual precipitation was 2-fold higher at Texas and South African sites than in California and the native range sites. Favourable weather conditions and reduced parasitism in Texas along the Rio Grande, as compared to the native range, allows T. romana to reach higher population levels and cause considerable damage to A. donax.     

Serological Strains of Tobacco Ringspot Virus Transmitted by Xiphinema americanum

Five serological strains of tobacco ringspot virus isolated from naturally infected tobacco in North Carolina, and a strain isolated from watermelon in the Rio Grande Valley of Texas were transmitted from cucumber to cucumber by mass-screened and handpicked Xiphinerna americanum from North Carolina. The Eucharis mottle strain from Peru was not transmitted, indicating that a specific strain-vector relationship may exist between the geographically isolated strains from North and South America.     

Cryptic species of rockfishes (Sebastes: Scorpaenidae) in the southern hemisphere inferred from mitochondrial lineages.

We used mitochondrial DNA sequence variation of Sebastes from the southeastern Pacific and three localities in the South Atlantic to address long-standing systematic and evolutionary issues regarding the number of species in the Southern Hemisphere. Sequences of the hypervariable mitochondrial control region were obtained from 10 specimens of S. capensis from South Africa (n = 5) and from Tristan da Cunha Island (n = 5) and 27 of S. oculatus from Valparaiso, Chile (n = 10), and the Falkland Islands (n = 17). Results of the study include (1) significant levels of genetic differentiation among the sampled populations (phi ST = 0.225, P < .000001), thus indicating limited gene flow; (2) corroboration of the existence of two different lineages of austral Sebastes corresponding to S. capensis and S. oculatus; (3) finding that S. capensis is not restricted to Tristan da Cunha and South Africa, but is widespread across the South Atlantic; (4) the position of S. capensis as the ancestral lineage of the austral Sebastes; (5) the existence of a third evolutionary lineage with high levels of genetic divergence, particularly abundant in the south-western Atlantic, which may be recognized as a third austral species of Sebastes.     

Beggar's ticks and tarweeds: Masters of adaptive radiation

The beggar's ticks (Bidens) and tarweeds (Madiinae) are very much more diversified morphologically and ecologically in the Hawaiian islands than in continental areas. Isozyme data and preliminary genetic analyses suggest that the adaptive features exhibited by these groups in Hawaii are based on relatively few gene loci. Each group has mechanisms promoting outcrossing: gynodioecy in the beggar's ticks, self-incompatibility in the tarweeds. While hybridization is not rare in the beggar's ticks, it is very common in the tarweeds. The tarweeds provide the only known instance of chromosomal evolution among studied examples of adaptive radiation. A number of other qualitative and quantitative differences exhibited by the tarweeds suggests the possibility of their greater antiquity in Hawaii compared to beggar's ticks and other groups.     

Geographic Variation in Venom Allelic Composition and Diets of the Widespread Predatory Marine Gastropod Conus ebraeus

Background

Members of the predatory gastropod genus Conus use a venom comprised of a cocktail of peptide neurotoxins, termed conotoxins or conopeptides, to paralyze prey and conotoxin gene family members diversify via strong positive selection. Because Conus venoms are used primarily to subdue prey, the evolution of venoms is likely affected by predator-prey interactions.

Methodology/Principal Findings

To identify the selective forces that drive the differentiation of venoms within species of Conus, we examined the distribution of alleles of a polymorphic O-superfamily conotoxin locus of Conus ebraeus at Okinawa, Guam and Hawaii. Previous analyses of mitochondrial cytochrome oxidase I gene sequences suggest that populations of C. ebraeus, a worm-eating Conus, are not structured genetically in the western and central Pacific. Nonetheless, because the sample size from Guam was relatively low, we obtained additional data from this location and reexamined patterns of genetic variation at the mitochondrial gene at Okinawa, Guam and Hawaii. We also utilized a DNA-based approach to identify prey items of individuals of C. ebraeus from Guam and compared this information to published data on diets at Okinawa and Hawaii. Our results show that conotoxin allelic frequencies differ significantly among all three locations, with strongest differentiation at Hawaii. We also confirm previous inferences that C. ebraeus exhibits no genetic differentiation between Okinawa, Guam and Hawaii at the mitochondrial locus. Finally, DNA-based analyses show that eunicid polychaetes comprise the majority of the prey items of C. ebraeus at Guam; while this results compares well with observed diet of this species at Okinawa, C. ebraeus preys predominantly on nereid polychaetes at Hawaii.

Conclusions/Significance

These results imply that strong selection pressures affect conotoxin allelic frequencies. Based on the dietary information, the selection may derive from geographic variation in dietary specialization and local coevolutionary arms races between Conus and their prey.