Nest survival of Woodpigeons (Columba palumbus) in North African forests

Capsule The nesting success of the Woodpigeon Columba palumbus in oak forests in Morocco is affected by human disturbance and nest-site characteristics.

Aims To determine factors affecting the nesting success of Woodpigeons subject to two levels of disturbance in a holm oak Middle Atlas forest.

Methods Woodpigeon nests were monitored in highly disturbed (n?=?30) and less-disturbed sites (n?=?60) over two years (2010–11). Logistic-exposure models were used to estimate daily nest-survival rate and evaluate mechanisms (altitude, temporal factors, nest location, nest-site habitat and degree of human influence) affecting nest survival.

Results Daily nest-survival rate was higher in less-disturbed sites (0.987; 95% CL: 0.980–0.991) than in high-disturbance sites (0.967; 95% CL: 0.949–0.978). Increasing density of trees surrounding nest sites and distance from the nest tree to the closest track increased daily nest-survival rate.

Conclusions Less-disturbed sites confer better nesting conditions than highly disturbed ones. Management measures should control the access of vehicles, especially trucks, in the forest of the Middle Atlas and introduce a grazing regime that will allow the forest regeneration, which would improve Woodpigeon nesting success by increasing the density of holm oak trees.     

Conjugates of Fluorescein and Saenta (5′-S-(2-Aminoethyl)-N 6-(4-nitrobenzyl)-5′-thioadenosine): Flow Cytometry Probes for the ES Nucleoside Transporter Elements of the Plasma Membrane

Abstract

SAENTA was linked to the C-5 or C-6 positions of fluorescein through several structures to form conjugates that were bound tightly to plasma membrane sites associated with es nucleoside transport activity. The conjugates imparted fluorescence to cells that expressed es nucleoside transport activity and served as es-selective plasma membrane stains suitable for flow cytometry. Prior treatment of es-expressing cells with nitrobenzylthioinosine prevented fluorescent staining with the conjugates. Seven SAENTA-fluorescein conjugates served as flow cytometric stains with high affinities for es sites, despite substantial differences in the SAENTA-fluorescein linkage structures.     

The genus Apsiphortica from China with DNA barcoding information (Diptera: Drosophilidae)

Two new species of the genus Apsiphortica are described from China: A. orthophallos n. sp. and A. sinuatipenis n. sp. Species delimitations are improved by integrating morphological and DNA barcoding information. The intra- and interspecific pairwise p-distances (proportional distance) are summarized for five Apsiphortica species from China. Furthermore, nucleotide sites with fixed status in the alignment of the COI sequences (639 nucleotide sites in length) are used as “pure” molecular diagnostic characters to delineate the five species. A key to all the Chinese species of the genus Apsiphortica is provided.     

Distribution of the Striped Hyaena (Hyaena hyaena syriaca Matius, 1882) (Carnivora: Hyaenidae) in urban and rural areas of Lebanon

Abstract

Striped Hyaenas (Hyaena hyaena syriaca) remain widely distributed across Lebanon, as revealed from a compilation of sources ranging from newspapers, to oral and official ministerial reports. They were observed in both urban and rural sites, and across non-protected and protected areas in all governorates, except in the densely populated capital Beirut. Interactions between Striped Hyaenas and people were studied in six identified sites representing a range of ecological, socio-economic and conservation-related conditions. Indirect signs determined by transect surveys of Striped Hyaenas, including footprints, hairs and scats, which were conducted from September 2002 to August 2003, indicate differences in the relative abundance of Striped Hyaenas between the different study sites. Very few indirect signs of Striped Hyaenas were noted in the two nature reserves studied, with more signs outside of these reserves in both urban and rural settings.     

Poly(glutamic Acid) for Biomedical Applications

ABSTRACT:?

Paclitaxel is a widely used anti-cancer agent. Conjugates of paclitaxel with poly(glutamic acid) have shown great promise in preclinical trials, and clinical trials are now underway. Preclinical data suggest that more paclitaxel is preferentially delivered to tumor sites vs. nonconjugated paclitaxel. When poly(glutamic acid) is conjugated to other families of cancer drugs, similar improvements in effectiveness and reduced toxicity are observed. Optimization of poly(glutamic acid) for use in drug delivery applications is a key step in making this technology viable.     

The effects of zolpidem treatment on GABA(A) receptors in cultured cerebellar granule cells: changes in functional coupling

AimsHypnotic zolpidem is a positive allosteric modulator of γ-aminobutyric acid (GABA) action, with preferential although not exclusive binding for α1 subunit-containing GABA_A receptors. The pharmacological profile of this drug is different from that of classical benzodiazepines, although it acts through benzodiazepine binding sites at GABA_A receptors. The aim of this study was to further explore the molecular mechanisms of GABA_A receptor induction by zolpidem.Main methodsIn the present study, we explored the effects of two-day zolpidem (10 μM) treatment on GABA_A receptors on the membranes of rat cerebellar granule cells (CGCs) using [³H]flunitrazepam binding and semi-quantitative PCR analysis.Key findingsTwo-day zolpidem treatment of CGCs did not significantly affect the maximum number (B_max) of [³H]flunitrazepam binding sites or the expression of α1 subunit mRNA. However, as shown by decreased GABA [³H]flunitrazepam binding, two-day exposure of CGCs to zolpidem caused functional uncoupling of GABA and benzodiazepine binding sites at GABA_A receptor complexes.SignificanceIf functional uncoupling of GABA and benzodiazepine binding sites at GABA_A receptors is the mechanism responsible for the development of tolerance following long-term administration of classical benzodiazepines, chronic zolpidem treatment may induce tolerance.     

Hellcotytencnus spp. (Nematoda: Tylenchida) from managed soils in New Zealand

Abstract

Helicotylenchus species collected from managed soils in New Zealand were identified. They were found at 159 sites. H. pseudorobustus was found at 82 of these sites, H. labiatus at 56, H. varicaudatus at 28, and H. canadensis at 4. Only 11 sites had more than one species present and most (7) of these sites had mixtures of H. pseudorobustus and H. labiatus. H. labiatus, reported only twice before, was the most common species found in cotula bowling greens. H. canadensis was restricted to sites south of 45°S. Measurements are given for 15 populations, and H. labiatus is illustrated. Characters separating the four species are given.     

Distribution of Plectidae (Nematoda: Araeolaimida) in pasture soils

Abstract

Across 88 sites 9 species were found, with Anaplectus granulosus at 56 sites, Plectus parietinus at 47, P. longicaudatus at 30, P. parvus at 15, P. cirratus and Wilsonema otophorum at 11, P. armatus and A. porosus at 4, and Tylocephalus auriculatus at 1 site. A key to Anaplectus males is given. For nine sites mean length of female A. granulosus is negatively correlated with mean annual air temperature. The most diverse fauna comprised six species in Kaitoke silt loam; it appears that faunal diversity increases with higher rainfall. Species apparently coexist through separation in size and time. Tylocephalus was only found in soils with a thermic soil temperature regime.     

Denning behaviour of ship rats (Rattus rattus) on Taukihepa,a seabird breeding island

Abstract

Den sites of 14 ship rats (Rattus rattus) were located daily during the rat breeding season on Taukihepa (Big South Cape), a seabird island southwest of Rakiura (Stewart Island). In contrast to other New Zealand studies, no arboreal dens were found. Den sites on Taukihepa were in ferns, under logs, in woodpiles, or underground in sooty shearwater (Puffinusgriseus) breeding burrows. The number of times known den sites used was positively related to the amount of leaf litter and woodpiles near the den sites. Overall, 24% of radio‐tagged rats were sharing den sites on any given day. While there was considerable individual variation in the number of times den sites were used, female rats tended to reuse den sites more than males. Many rats were found in dens alone, but frequently males and females shared. Occasionally two females and one male denned together, as did two females, whereas males never denned with another male.     

Impact of sewage pollution on two species of sea urchins in the Mediterranean Sea (Cortiou,France): Radial asymmetry as a bioindicator of stress

BackgroundThe surroundings of the Cortiou sewage are among the most polluted environments of the French Mediterranean Sea (Marseilles, France). So far, no studies have precisely quantified the impact of pollution on the development of organisms in this area.MethodsWe used a fluctuating asymmetry (FA) measure of developmental instability (DI) to assess environmental stress in two species of radially symmetric sea urchins (Arbacia lixula and Paracentrotus lividus). For six sampling sites (Cortiou, Riou, Maire, East Maire, Mejean, and Niolon), levels of FA were calculated from continuous and discrete skeletal measures of ambulacral length, number of pore pairs and primary tubercles.ResultsFor both species, the most polluted sampling site, Cortiou, displayed the highest level of FA, while the Maire and East Maire sampling sites displayed the lowest levels. A. lixula revealed systematic differences in FA among sampling sites for all characters and P. lividus showed differences in FA for the number of primary tubercles.ConclusionsStatistical analyses of FA show a concordance between the spatial patterns of FA among sampling sites and the spatial distribution of sewage discharge pollutants in the Cortiou area. High developmental stress in these sampling sites is associated with exposure to high concentrations of heavy metals and many harmful organic substances contained in wastewater. FA estimated from structures with complex symmetry appears to be a fast and reliable tool to detect subtle differences in FA. Its use in biomonitoring programs for inferring anthropogenic and natural environmental stress is suggested.     

Identification and characterization of fragment binding sites for allosteric ligand design using the site identification by ligand competitive saturation hotspots approach (SILCS-Hotspots)

BackgroundFragment-based ligand design is used for the development of novel ligands that target macromolecules, most notably proteins. Central to its success is the identification of fragment binding sites that are spatially adjacent such that fragments occupying those sites may be linked to create drug-like ligands. Current experimental and computational approaches that address this problem typically identify only a limited number of sites as well as use a limited number of fragment types.MethodsThe site-identification by ligand competitive saturation (SILCS) approach is extended to the identification of fragment bindings sites, with the method termed SILCS-Hotspots. The approach involves precomputation of the SILCS FragMaps following which the identification of Hotspots, performed by identifying of all possible fragment binding sites on the full 3D structure of the protein followed by spatial clustering.ResultsThe SILCS-Hotspots approach identifies a large number of sites on the target protein, including many sites not accessible in experimental structures due to low binding affinities and binding sites on the protein interior. The identified sites are shown to recapitulate the location of known drug-like molecules in both allosteric and orthosteric binding sites on seven proteins including the androgen receptor, the CDK2 and Erk5 kinases, PTP1B phosphatase and three GPCRs; the β2-adrenergic, GPR40 fatty-acid binding and M2-muscarinic receptors. Analysis indicates the importance of considering all possible fragment binding sites, and not just those accessible to experimental methods, when identifying novel binding sites and performing ligand design versus just considering the most favorable sites. The approach is shown to identify a larger number of known binding sites of drug-like molecules versus the commonly used FTMap and Fpocket methods.General significanceThe present results indicate the potential utility of the SILCS-Hotspots approach for fragment-based rational design of ligands, including allosteric modulators.     

First record of the beetle Osphranteria coerulescens Redtenbacher, 1850 (Coleoptera,Cerambycidae) from Turkey

Abstract

The beetle Osphranteria coerulescens, until now known only from a few places in Iran and in Syria is reported from four sites in Eastern Turkey.     

The Yeo Site (23CL 199):

Abstract

In 1976 Alfred E. Johnson proposed a subsistencesettlement model for Kansas City Hopewell. The model consisted of a subsistence territory encompassirig a drainage upon which a large permanent village settlement was located near its mouth with a series of smaller specialized ancillary sites located up from the village. Limited corn and squash horticulture would be present in the latter half of the occupation too. A test of such a model would be actual limited activity sites. The Yeo site, a late kansas City Hopewell site, is a hickory nut/marsh elder seed collection/storage station. It is exactly the type of site necessary to substantiate such a model. Also, such a test implies the testing of the notion that there are “specialized, limited activity sites,” sites which are important to some of the suppositions of the New Archaeology. Additionally, the presence of the combination of hickory/cultivated marsh elder (Iva annua var. macrocarpa) utilization within the context of an upland oak-history forest may be interpreted as supporting Asch and Asch’s (1978) model of marsh elder domestication.     

Ordering selected Zn(II), Cu(II), Pd(II) and Co(III) complex compounds: their separately and combinedly antibacterial therapy and DNA-binding studies

Abstract

In this study, four Co(III)-, Cu(II)-, Zn(II)- and Pd(II)-based potent antibacterial complexes of formula K₃[Co(ox)₃]·3H₂O (I), [Cu(phen)₂Cl]Cl·6.5H₂O (II), [Zn(phen)₃]Cl₂ (III) and [Pd(phen)₂](NO₃)₂ (IV) (where ox is oxalato and phen is 1,10-phenanthroline) were synthesized. They were characterized by elemental analysis, molar conductivity measurements, UV–vis, Fourier transform infrared (FT-IR) and proton nuclear magnetic resonance (¹H-NMR) techniques. These metal complexes were ordered in three combination series of I+II, I+II+III and I+II+III+IV. Antibacterial screening for each metal complex and their combinations against Gram-positive and Gram-negative bacteria revealed that all compounds were more potent antibacterial agents against the Gram-negative than those of the Gram-positive bacteria. The four metal complexes showed antibacterial activity in the order I > II > III > IV, and the activity of their combinations followed the order of I+II+III+IV > I+II+III > I+II. The DNA-binding properties of complex (I) and its three combinations were studied using electronic absorption and fluorescence (ethidium bromide displacement assay) spectroscopy. The results obtained indicated that all series interact effectively with calf thymus DNA (CT-DNA). The binding constant (K_b), the number of binding sites (n) and the Stern–Volmer constant (K_sv) were obtained based on the results of fluorescence measurements. The calculated thermodynamic parameters supported that hydrogen bonding and van der Waals forces play a major role in the association of each series of metal complexes with CT-DNA and follow the above-binding affinity order for the series.

Communicated by Ramaswamy H. Sarma     

Phenology of native weevils (Coleoptera: Curculionidae) in New Zealand pastures and parasitism by the introduced braconid,Microctonus aethiopoides Loan (Hymenoptera: Braconidae)

Abstract

The phenology of native brachycerine weevil species at seven pasture sites in Otago, Canterbury and Waikato was studied by regular quantitative sampling of adults. Weevils were identified to species, and dissected to record reproductive status and parasitism by introduced braconid parasitoids in the genus Microctonus. Climatic data assisted in the interpretation of some population density patterns. Weevil population density was estimated for periods of two to five years at the selected sites. Species in the Entimini (species of Irenimus and Nicaeana) were generally univoltine, with adults emerging in winter‐spring. The main period of reproductive activity was spring, and parasitism by Microctonus aethiopoides reached its highest incidence in January. Low level parasitism of native weevil species by M. aethiopoides was detected at all sites, and by M. hyperodae at two sites. At one site in Otago, parasitism by M. aethiopoides was higher and could have affected the population density of Irenimus aemulator (Broun) and Nicaeana sp. Most parasitism occurred after the main reproductive period of weevils in spring, but a putative second generation in some species might be more affected by parasitoid attack. A native rhytirhinine species, Steriphus variabilis, differed from the entimines because adults emerged in autumn and spring, and may be bivoltine. Mechanisms of M. aethiopoides parasitism of non‐target species in the field are discussed.     

Distribution of Mononchoidea (Nematoda: Enoplea) in pasture soils,with description of lotonchus stockdilli n. sp.

Abstract

Across 64 sites 8 species were found, with Clarkus propapillatus at 60 sites, C. composticola at 7, Prionchulus muscorum at 3, Mylonchulus ubis at 7, M. sigmaturus at 1, Cobbonchus australis at 9, lotonchus basidontus at 4, and I. stockdilli n. sp. at 3 sites. Sampling effort varied at the sites and significant annual and management effects have previously been reported on mononchid populations. No clear geographic or soil factor is apparent in the distributions, but more species may occur at sites with higher annual rainfall. lotonchus stockdilli n. sp. is a large (female L = 3.05–5.90 mm), bisexual species with dorsal tooth at the posterior of the sclerite, female tail about 400 μm or 14%, and no cuticular pores in the vulval region.     

AnO(N 2 logN) restriction map comparison and search algorithm

We present anO(R logP) time,O(M+P ² ) space algorithm for searching a restriction map withM sites for the best matches to a shorter map withP sites, whereR, the number of matching site pairs, is bounded byMP. As first proposed by Watermanet al. (1984,Nucl. Acids Res. 12, 237–242) the objective function used to score matches is additive in the number of unaligned sites and the discrepancies in the distances between adjacent aligned sites. Our algorithm is basically a sparse dynamic programming computation in which “candidate lists” are used to model the future contribution of all previously computed entries to those yet to be computed. A simple modification to the algorithm computes the distance between two restriction maps withM andN sites, respectively, inO(MN(logM+logN)) time. This author’s work was supported in part by National Library of Medicine Grant R01-LM4960. This author’s work was supported in part by National Library of Medicine Grant R01-LM5110.     

Structure and Dynamics of Distamycin A with d(CGCAAATTGGC):d(GCCAATTTGCG) at Low Drug: DNA Ratios

Abstract

Two-dimensional NMR has been used to study the interaction of distamycin A with d(CGCAAA- TTGGC):d(GCCAATTTGCG) at low and intermediate drug: DNA ratios (<2.0). Drug-DNA contacts were identified by nuclear Overhauser effect spectroscopy, which also served to monitor exchange of the drug between different binding sites. At low drug: DNA ratios (0.5), distamycin A binds in two orientations within the five central A-T base pairs and has a preference (2.2:1) for binding with the formyl end directed toward the 5′ side of the A-rich strand. The pattern of drug-DNA contacts corresponding to the preferred binding orientation are consistent with the drug sliding between adjacent AAAT and AATT binding sites at a rate that is fast on the NMR time scale. Similarly, the pattern of NOEs associated with the less favored orientation are consistent with the drug sliding between adjacent AATT and ATTT sites, again in fast exchange. Off-rates for the drug from the major and minor binding orientations were measured to be 2.4 =1.5 and 3.3 = 1.5 s^?1 respectively, at 35°C. At intermediate drug: DNA ratios (1.3) exchange of the drug between the two one-drug and the two sites of a two-drug complex is observed. Off-rates for both drugs from the 2:1 complex were measured to be 1.0 =0.5 s^?1 (35°C).     

Litter accumulation and biomass dynamics in riparian zones in tropical South America of the Asian invasive plant Hedychium coronarium J. König (Zingiberaceae)

ABSTRACT

Background: Promoting changes in abiotic conditions and ecosystem processes, such as decomposition, is a mechanism by which some exotic plant species displace native plants and become invasive.

Aims: We monitored ramets of Hedychium coronarium over 30 months to estimate the litter decay rate, biomass dynamics and litter accumulation over time in riparian sites invaded by the species in southeastern Brazil.

Methods: We measured the number, height, emergence and mortality of ramets in three environments invaded by H. coronarium (natural, rural and urban). We also measured litter decay in situ and in in vitro experiments. We used sinusoidal models to describe height fluctuation and exponential models to simulate litter decay and litter accumulation.

Results: Ramets of H. coronarium showed high seasonal variation in terms of height and emergence, as well as low litter decay. Accordingly, our models predicted high litter production and a seasonal pattern of litter accumulation in invaded sites.

Conclusions: H. coronarium produces a great amount of litter, which shows slow decay and hence seems to affect decomposition processes. Investigating seasonal variation on the effects of invasive species on ecosystem functioning shed light on the factors driving the success and impact of invasive plants.