2 Protein Folding and its Implications for the Production of Recombinant Proteins

Abstract

Humans have utilised plant derived natural products as medicines for millenia. Moreover, many contemporary pharmaceuticals are also natural products or derivatives thereof. However, the full potential of these compounds remains to be exploited because often they are: complex and difficult to synthesise; found in low quantities; produced by undomesticated and sometimes rare plants; and, their synthesis is routinely influenced by weather conditions. Potentially, the in vitro culture of cells from the corresponding plant species could circumvent some of these problems but the growth of plant cells on an industrial scale is also problematic. The recent isolation and culture of cambial meristematic cells (CMCs), stem cells which ordinarily generate the plant vasculature, may now provide a key platform technology to help realise the full potential of plant natural products.     

The garden of the “Casa delle Nozze di Ercole ed Ebe“ in Pompeii (Italy): Palynological investigations

ABSTRACT

Palynological investigations in the garden of the “Casa delle Nozze di Ercole ed Ebe“ in Pompeii revealed the presence of Vitis and Citrus. Citrus has often been said to be cultivated in Roman times, but no plant remains have ever confirmed this hypothesis as regards Pompeii. In this paper, we give evidence for an early cultivation of this plant in a garden. Analyses revealed that, as already observed in other gardens, the ground was covered by herbs which were the same as those found in ancient and contemporary meadows of the Vesuvian area.     

The Study of Archaeologically Recovered Plant Materials from the Middle Missouri Subarea

Abstract

Archaeologists working in the Middle Missouri have traditionally relied heavily on historic patterns of hunting and gardening in the interpretation of data. This practice is briefly reviewed and related to the traditionally recovered plant remains. Several recent collection of large-seeded Iva and Helianthus are reported. Problems involving the interpretation of the more recent collections are discussed.     

Effect of neighbour presence and soil volume on the growth of Andropogon gerardii Vitman

Background: Theory predicts that plants can reduce their fitness in the presence of neighbours by allocating resources to root growth, in order to pre-empt resource capture. A number of studies that have tested this idea have done so by using experiments where neighbour presence is confounded with soil volume.

Aims : To avoid confounding effects of neighbour presence and soil volume we adjusted these variables independently from one another.

Methods: We grew Andropogon gerardii with and without neighbours, holding soil volume available to each plant constant, and compared plant performance with a treatment where both neighbour presence and soil volume were varied. We also grew plants with a quarter of the soil volume but four times the nutrient concentration to determine if changes in plant growth in response to soil volume are caused by access different levels of soil resources.

Results: We found no evidence that plants adjust root growth to the presence of neighbour roots alone. We did, however, find a significant reduction in plant growth when soil volume was reduced. The reduction was overcome by increasing nutrient concentrations in the growth media.

Conclusions: Our results suggest the effects of soil volume on plant growth are mainly due to changes in nutrient availability.     

Commentary

Recently rediscovered type material referred to Muensteria Stern‐berg confirms that in its original (paleobotanical) definition this genus is too heterogenous to be useful in ichnotaxonomy. It contains plant remains, a coprolite string, and trace fossils. Some corrections concerning appearance of the analyzed specimens are introduced.     

Agrobacterium as a tool for gene transfer in woody species: The state of the art and practical perspectives. A review

Abstract

The Agrobacterium-mediated ability to transfer genes into organisms without sexual crossing provides breeders with new opportunities to improve the efficiency of plant production. Gene transfer offers advantages over classical genetic manipulation since plants are improved without disruption of the integrity of their genomes. Several useful genes isolated from microrganisms and affecting pest resistance, rooting ability, hormonal metabolism etc., are now available. These genes can be easily cloned into suitable Ti and Ri derived plasmid vectors and transferred into woody species. The scarce ability of most fruit trees to regenerate the whole plant from in vitro-cultured cells remains the main obstacle to a wider use of gene transfer technology.     

Soil pH and phosphorus drive species composition and richness in semi-natural heathlands and grasslands unaffected by twentieth-century agricultural intensification

Background: Increased soil phosphorus (P) caused by agricultural intensification has been associated with decreased plant species richness (SR) in central Europe. How plant communities and soil P gradients are related in unimproved open habitats remains unclear.

Aims: The aim of this article was to characterise the relationship between soil chemical parameters and plant species composition and richness in unimproved open habitats.

Methods: The influence of soil chemical parameters (pH, P, K, Mg) on species composition was assessed, using data from 40 heathland and 54 grassland plots, by non-metric multidimensional scaling and permutational multivariate analysis of variance. The relationship between soil chemical parameters and SR was tested by linear mixed effects models.

Results: A direct relationship between heathland community composition and pH was observed, explaining 10% of variation in species composition, while P, Mg and pH together explained 17% of variation in grassland composition. In heathlands, SR increased with increasing pH, whereas in grasslands, SR decreased with increasing soil P.

Conclusions: Soil chemical parameters were substantially related to plant community composition and richness. In an area spared from a century of agricultural intensification, reduced pH appeared to constrain SR in heathlands, while even slight P increases (<10 mg kg^?1) depressed plant SR in semi-natural grasslands.     

Pine invasion decreases density and changes native tree communities in woodland Cerrado

ABSTRACT

Background: Invasive plants can negatively impact native communities, but the majority of the effects of these invasions have been demonstrated only for temperate ecosystems. Tropical ecosystems, including the Cerrado, a biodiversity hotspot, are known to be invaded by numerous non-native species, but studies of their impacts are largely lacking.

Aims: Our research aimed at quantifying how Pinus spp. presence and density affected Cerrado plant communities.

Methods: We sampled areas invaded and non-invaded by Pinus spp. to determine if pine invasion affected native tree richness, diversity, evenness, and density. We also evaluated if community composition differed between invaded and non-invaded sites.

Results: We found invaded plots had lower native tree densities than non-invaded plots and that Pinus spp. invasions changed native tree communities by reducing native species abundances.

Conclusion: Invasive pines had negative impacts on the native Cerrado tree community by reducing native plant density and changing species abundances. Reduced density and abundance at early invasion stages can result in reduction in biodiversity in the long term.     

Trace fossils in fluvial deposits of the uppermost Stockton Formation (Late Triassic), Newark Basin,New Jersey

Abstract

Fluvial deposits of the uppermost Stockton Formation (Late Triassic), Newark Basin, west-central New Jersey have yielded an assemblage of trace fossils. Dominated by burrows, specimens include Cochlichnus anguineus, Helminthoidichnites tenuis, Planolites beverleyensis, Scoyenia gracilis, Spongeliomorpha carlsbergi, Treptichnus bifurcus, Treptichnus pollardi, plant remains, and an undetermined vertebrate trace fossil. The assemblage belongs to the Scoyenia ichnofacies. On the basis of stratification and primary sedimentary structures, the beds are interpreted as deposits in a meandering stream environment. Larval insects, wormlike forms, and arthropods are probably responsible for most of the animal traces in wet or moist channel, floodplain, and point bar sediments subject to subaerial exposure.     

Anthropogenic Vegetation Contributions to Polynesia’s Social Heritage: The Legacy of Candlenut Tree (<Emphasis Type="Italic">Aleurites moluccana</Emphasis>) Forests and Bamboo (<Emphasis Type="Italic">Schizostachyum glaucifolium</Emphasis>) Groves on the Island of Tahiti

Anthropogenic Vegetation Contributions to Polynesia’s Social Heritage: The Legacy of Candlenut Tree ( Aleurites moluccana ) Forests and Bamboo ( Schizostachyum glaucifolium ) Groves on the Island of Tahiti. In the tropical oceanic islands of the Pacific, vegetation patterns and dynamics are the result of plant dispersal capacities, the physical characteristics of the islands’ ecosystems, and natural disturbances. However, humans have profoundly modified native landscapes through habitat destruction and the introduction of animal and plant species. The candlenut tree Aleurites moluccana (Euphorbiaceae) and the Polynesian bamboo Schizostachyum glaucifolium (Poaceae), intentionally introduced as useful plants by the first Polynesian migrants at least 1,000 years ago, are now widely naturalized in the high volcanic islands of the Society archipelago (French Polynesia), but with an intriguing patchy distribution. The present study consists of a comparative analysis between the most recent existing vegetation map and the known archeological sites on the island of Tahiti. Thirty-nine bamboo groves and 30 candlenut forests were identified and located using GIS and a Digital Elevation Model. The results show that the dispersal and distribution patterns of these two plant taxa are related to the presence and location of ancient sites of Polynesian occupation. The bamboo groves can be used as a bio-indicator of the presence of potential archeological sites. Their currently restricted distribution might reflect habitat requirements and poor dispersal capacities. The candlenut tree and the Polynesian bamboo are relicts of ancient Polynesian society that have persisted and remain integrated in the modern landscape. They can therefore be viewed as introduced species of high cultural heritage value.     

Spatial relations and population structure of a dominant tree along a treeline ecotone in the Tropical Andes: interactions at gradient and plant-neighbourhood scales

Background: Studies in temperate mountains suggest that plant–plant interactions modulate tree establishment above the forest line. In tropical mountains worldwide this issue remains largely unexplored.

Aims: To analyse the population structure and local spatial relationships of a dominant tree at a species-rich tropical Andean forest line.

Methods: We determined changes in the population structure of Diplostephium venezuelense along an elevation gradient between continuous forest and open páramo and analysed plant community structure and superficial rock cover in the neighbourhood of saplings and adults at the upper forest line.

Results: Sapling and adult densities were highest in low-altitude páramos adjacent to the forest line and at the borders of small forest islands. Saplings showed local spatial aggregation, were positively associated with small boulders and low shrubs, and negatively associated with mosses and lichens. However, no spatial association was found between scattered adults in the páramo and saplings of other forest trees.

Conclusions: Complex species-specific local spatial interactions, suggesting both facilitative and antagonistic effects, seem to modulate the establishment of the dominant tree D. venezuelense at and above the upper forest line. Nevertheless, the establishment of other tree species above continuous forests does not appear to be facilitated by the canopy cover offered by the isolated D. venezuelense individuals established in open páramo environments.     

Committee for the study of the Scottish Flora

Background: Damage to alpine plant communities is likely to occur when hikers and pack animals trample vegetation. Currently, there is limited research that quantifies and compares impacts from these activities.

Aims: A manipulative experimental protocol was used to assess damage to alpine meadows by pack animals and hikers in the Aconcagua Provincial Park, Andes, Argentina.

Methods: Vegetation height, overall cover, cover of dominant species and species richness were measured immediately after, and 2 weeks after different numbers of passes (0, 25, 100 and 300) by hikers or pack animals in an experiment, using a randomised block design.

Results: Pack animals had two to three times the impact of hiking on the meadows, with greater reductions in plant height, the cover of one of the dominant sedges and declines in overall vegetation cover after 300 passes. Impacts of pack animals were also apparent at lower levels of use than for hikers. These differences occurred despite the meadow community having relatively high resistance to trampling due to the traits of one of the dominant sedges (Carex gayana).

Conclusions: Pack animals caused more damage than hikers to the alpine meadow, but the scale of the difference in short-term impacts depends on the characteristics of the plant community, the amount of use and the vegetation parameters measured. Use of the meadows by hikers and pack animals should be minimised as these meadows are scarce, and have high conservation values.     

Vegetation,microclimate and soils associated with the latest-lying snowpatches in Australia

Background : The Snowy Mountains contain Australia's longest-lasting snowpatches. Because of climate change, their longevity has declined, with the loss of some specialist vegetation in the underlying snowbeds.

Aims: To characterise the current status of the vegetation associated with the longest-lasting snowpatches in Australia and its association with abiotic factors.

Methods: We assessed plant composition, soil depth, moisture and nutrients and subsurface temperatures in five zones of increasing vegetation height and cover in snowbeds.

Results: The zone beneath the middle of snowpatches was characterised by little vegetation cover and lower species richness, later emergence from snow, skeletal soils, and lower mean soil temperatures than zones further downslope where soils increased in depth and nutrient levels. Vegetation beneath these snowpatches no longer occurs in distinct communities. Plants have not simply migrated upslope, instead, areas that have deep soil that used to have snowpatch specialist species are being colonised upslope by grasses and downslope by tall alpine herbfield species that prefer bare ground.

Conclusions: Reduced longevity of Australia's longest-lasting snowpatches has led to the loss of distinct snowpatch plant communities. With limited soils beneath the centre of current snowpatches, and a lack of other suitable sites there is no location for these plant communities to migrate to.     

The consequences of multiple resource shifts on the productivity and composition of alpine tundra communities: inferences from a long-term snow and nutrient manipulation experiment

Background: Gradients in the amounts and duration of snowpack and resulting soil moisture gradients have been associated with different plant communities across alpine landscapes.

Aims: The extent to which snow additions could alter plant community structure, both alone and in combination with nitrogen (N) and phosphorus (P) additions, provided an empirical assessment of the strength of these variables on structuring the plant communities of the alpine tundra at Niwot Ridge, Colorado Front Range.

Methods: A long-term snow fence was used to study vegetation changes in responses to snowpack, both alone and in conjunction with nutrient amendments, in plots established in dry and moist meadow communities in the alpine belt. Species richness, diversity, evenness and dissimilarity were evaluated after 20 years of treatments.

Results: Snow additions, alone, reduced species richness and altered species composition in dry meadow plots, but not in moist meadow; more plant species were found in the snow-impacted areas than in nearby controls. Changes in plant community structure to N and N + P additions were influenced by snow additions. Above-ground plant productivity in plots not naturally affected by snow accumulation was not increased, and the positive responses of plant species to nutrient additions were reduced by snow addition. Plant species showed individualistic responses to changes in snow and nutrients, and indirect evidence suggested that competitive interactions mediated responses. A Permanova analysis demonstrated that community dissimilarity was affected by snow, N, and P additions, but with these responses differing by community type for snow and N. Snow influenced community patterns generated by N, and finally, the communities impacted by N + P were significantly different than those affected by the individual nutrients.

Conclusions: These results show that changes in snow cover over a 20-year interval produce measureable changes in community composition that concurrently influence and are influenced by soil nutrient availability. Dry meadow communities exhibit more sensitivity to increases in snow cover whereas moist meadow communities appear more sensitive to N enrichment. This study shows that the dynamics of multiple limiting resources influence both the productivity and composition of alpine plant communities, with, species, life form, and functional traits mediating these responses.     

On Cannabis indica,Indian hemp

Background: The South Aegean Volcanic Arc (SAVA), one of the most notable geological structures of the Mediterranean Sea, is floristically well known. Nevertheless, the factors that contribute to shaping the plant species richness of the SAVA remain unclear.

Aims: To investigate the factors that affect plant species richness and identify plant diversity hotspots in the SAVA and other central Aegean islands.

Methods: We used stepwise multiple regression to test the relationship between a number of environmental factors and plant species richness in the SAVA, as well as the residuals from the species–area linear regressions of native, Greek and Cycladian endemic taxa as indicators of relative species richness.

Results: The area was confirmed to be the most powerful single explanatory variable of island species richness, while geodiversity, maximum elevation and mean annual precipitation explained a large proportion of variance for almost all the species richness measures. Anafi, Amorgos and Folegandros were found to be endemic plant diversity hotspots.

Conclusions: We have demonstrated that geodiversity is an important factor in shaping plant species diversity in the Cyclades, while mean annual precipitation, human population density and maximum elevation were significant predictors of the Greek endemics present in the Cyclades. Finally, Anafi was found to be a plant diversity hotspot in the South Aegean Sea.     

Plant and animal cuticle remains from the Lower Devonian of southern Poland and their palaeoenvironmental significance

Filipiak, P. & Zatoń, M. 2010: Plant and animal cuticle remains from the Lower Devonian of southern Poland and their palaeoenvironmental significance. Lethaia, Vol. 44, pp. 397–409. Assemblages of plant and arthropod remains are reported from the Lower Devonian clastic deposits of the Upper Silesian and Ma?opolska blocks in southern Poland. Most of the plant and animal remains are palynologically dated as Pragian–Emsian/Eifelian. The plant material comprises higher plant cuticles with stomata classified as Drephanophycus and Sawdonia, and more enigmatic remains (nematophytes) classified as Nematothallus, Cosmochlaina and tubular banded tubes. They are associated with abundant and diverse miospores. Animal remains consist of eurypterid respiratory organs, the morphology of which may presumably point to their advance physiological properties, and cuticular remains of eurypterid and probably scorpion origin, as well as some remains of unknown affinity. The presence of such mixed assemblages in the Lower Devonian of Poland indicate marginal‐marine and/or alluvial environments spreading in the southern margin of the Old Red Continent. The dominance of land‐derived plant remains and simultaneous scarcity of marine acritarchs indicate that the environment was very weakly influenced by marine conditions. If nematophytes were really related to extant liverworts, as suggested by some workers, they, together with the other associated spore‐producing plants, may strongly indicate moist environmental conditions, which may have offered suitable habitats for temporary eurypterid migrations onto land. □Cuticles, eurypterids, Lower Devonian, nematophytes, Poland, spores.     

Parallel Evolution Under Domestication and Phenotypic Differentiation of the Cultivated Subspecies of <Emphasis Type="Italic">Cucurbita pepo</Emphasis> (Cucurbitaceae)

Parallel Evolution under Domestication and Phenotypic Differentiation of the Cultivated Subspecies of Cucurbita pepo (Cucurbitaceae). Cucurbita pepo (pumpkin, squash, gourd, Cucurbitaceae) is an ancient North American domesticate of considerable economic importance. Based on molecular genetic polymorphisms, two cultivated lineages of this species, each consisting of very many edible–fruited cultigens, have been recognized, C. pepo subsp. pepo and C. pepo subsp. texana. However, the phenotypic commonalities and differences between these two subspecies have not as yet been systematically collected and organized. Among the evolutionary developments common to the two subspecies are the increased size of the plant parts, less plant branching, and premature loss of chlorophyll in the exocarp of the fruits. In both subspecies, bush growth habit, conferred by allele Bu, is common to the cultigens grown for consumption of the immature fruits, as is the deviation from the 1:1 ratio of fruit length to fruit width. A major characteristic differentiating between the edible–fruited cultigens of the respective subspecies are the longitudinal protrusions, in subsp. pepo, versus depressions, in subsp. texana, of the fruit surface corresponding with the subsurface primary carpellary vein tracts. Subsp. pepo also has larger fruits and larger and longer seeds. In addition, some alleles affecting stem color, leaf mottling, multiple flower bud production, and fruit characteristics are frequently occurring to nearly fixed in one subspecies but are rare to less common in the other.     

Plant growth enhancement is not a conserved feature in the Caulobacter genus

Aims

Species within the Caulobacter genus have been termed ‘hub species’ in the plant microbiome. To understand these interactions, we assessed the interactions between several Caulobacter strains and a common host plant.

Methods

We identified a set of 11 Caulobacter strains that range in genetic diversity and tested them for their ability to increase the growth of Arabidopsis thaliana. In addition, biochemical assays were employed to determine if these Caulobacter strains produce common plant growth promoting (PGP) biosynthates. To identify potential PGP-related genes, genomic analyses were performed to compare the genomes of PGP Caulobacter strains to those of non-PGP Caulobacter strains.

Results

For the PGP Caulobacter strains, we observed that common PGP biosynthates did not contribute to the observed Caulobacter-mediated plant growth stimulation. Genomic analyses suggested that the genomes of PGP strains maintain similar metabolic pathways compared to those of non-PGP strains, and that common genes related to PGP factors do not explain the PGP mechanisms for the Caulobacter strains we analyzed.

Conclusions

Plant growth enhancement is not a conserved feature in the Caulobacter genus, and some Caulobacter strains even inhibit plant growth. Moreover, common PGP factors do not fully explain Caulobacter-mediated plant growth enhancement.