A novel method for estimating the strength of positive mating preference by similarity in the wild

Mating preference can be a driver of sexual selection and assortative mating and is, therefore, a key element in evolutionary dynamics. Positive mating preference by similarity is the tendency for the choosy individual to select a mate which possesses a similar variant of a trait. Such preference can be modelled using Gaussian‐like mathematical functions that describe the strength of preference, but such functions cannot be applied to empirical data collected from the field. As a result, traditionally, mating preference is indirectly estimated by the degree of assortative mating (using Pearson's correlation coefficient, r) in wild captured mating pairs. Unfortunately, r and similar coefficients are often biased due to the fact that different variants of a given trait are nonrandomly distributed in the wild, and pooling of mating pairs from such heterogeneous samples may lead to “false–positive” results, termed “the scale‐of‐choice effect” (SCE). Here we provide two new estimators of mating preference (C_rough and C_scaled) derived from Gaussian‐like functions which can be applied to empirical data. Computer simulations demonstrated that r coefficient showed robust estimations properties of mating preference but it was severely affected by SCE, C_rough showed reasonable estimation properties and it was little affected by SCE, while C_scaled showed the best properties at infinite sample sizes and it was not affected by SCE but failed at biological sample sizes. We recommend using C_rough combined with the r coefficient to infer mating preference in future empirical studies.     

Carbon use efficiency depends on growth respiration, maintenance respiration, and relative growth rate. A case study with lettuce

Carbon use efficiency (C_UE, the ratio between the amount of carbon incorporated into dry matter to the amount of carbon fixed in gross photosynthesis) is an important parameter in estimating growth rate from photosynthesis data or models. It previously has been found to be relatively constant among species and under different environmental conditions. Here it is shown that C_UE can be expressed as a function of the relative growth rate (r_GR) and the growth (g_r) and maintenance respiration coefficients (m_r): 1/C_UE = 1 + g_r + m_r/r_GR. Net daily carbon gain (C_dg), r_GR, and C_UE were estimated from whole‐plant gas exchange measurements on lettuce (Lactuca sativa L.) ranging from 24 to 66 d old. Carbon use efficiency decreased from 0.6 to 0.2 with increasing dry mass, but there was no correlation between C_UE and C_dg. The decrease in C_UE with increasing dry mass was correlated with a simultaneous decrease in r_GR. From the above equation, g_r and m_r were estimated to be 0.48 mol mol^?1 and 0.039 g glucose g^–1 dry matter d^?1, respectively. Based on the g_r estimate, the theoretical upper limit for C_UE of these plants was 0.68. The importance of maintenance respiration in the carbon balance of the plants increased with increasing plant size. Maintenance accounted for 25% of total respiration in small plants and 90% in large plants.     

On the Uniqueness of the Reverse Monte Carlo Simulation for Molecular Liquids

Abstract

A careful analysis of the three dimensional structures of liquid Chlorine produced by the Reverse Monte Carlo (RMC) and Molecular Dynamics (MD) techniques is presented. The analysis allows us to measure the degree of uniqueness between the potential and the atom-atom distribution functions, g _aa(r), in the case of pairwise potentials formed by isotropic and anisotropic site-site interactions. The g _aa(r) obtained from MD simulations are used as ‘experimental’ input data in the RMC procedure and the constraint of rigid molecules is imposed. The particle configurations produced by RMC are then studied by using a recently proposed general method for analysing the local order in liquids. The same analysis applied to the particle configurations produced by the conventional MD simulation yields a set of partial distribution functions which relates the main features of the g _aa(r) to microscopic pair geometries. The comparison between the partial centre-centre g _cc(r) shows that the three dimensional structures, produced by MD and RMC simulations, agree very well when only isotropic site-site interactions act. In this case RMC produces the same radial distribution function g(r, ω₁, ω₂) as that obtained from the original MD configurations; it is therefore a valid tool for deriving a complete information on the physical properties of a fluid. For anisotropic site-site interactions the partial g _cc(r) of MD and RMC differ significantly and show that the three dimensional structures, produced by MD and RMC simulations, differ too. The discrepancies are particularly evident for the T shaped configurations and affect the values of the potential energy. Therefore, even if the potential is purely pairwise additive, the use of the atomic radial distribution function as input data and the imposition of atomic constraints which model the molecules as hard dumbbells are not sufficient to bring the RMC procedure towards the ‘true’ microscopic structure of the liquid; the presence of non central forces between sites disrupts the bijective correspondence between the potential and the g _aa(r).     

Effect of prey concentration on growth of piscivorous Japanese Spanish mackerel Scomberomorus niphonius larvae in the Seto Inland Sea, Japan

Japanese Spanish mackerel, Scomberomorus niphonius, larvae feed almost exclusively on fish larvae from the first‐feeding stage. The relationship between the growth of S. niphonius larvae and concentration of major prey organisms of the larvae, clupeid larvae, was investigated in the Sea of Hiuchi, the central Seto Inland Sea, Japan, from 28 to 29 May 1997. Water temperature, salinity, and the concentration of clupeid larvae had no significant effect on the S. niphonius larval concentration. Mean growth rate of S. niphonius larvae varied between 0.38 and 0.64 mm day^?1. The temperature and salinity had no significant effect on the mean larval growth rate while there existed prey concentration‐dependent growth at lower prey concentration. The relationship between the mean larval growth rate (G_m) and concentration of clupeid larvae (C_C) was expressed by a logarithmic equation: G_m = 0.037 log C_C + 0.441 (n = 16, r² = 0.519, P < 0.01).     

Changes of Lipid Composition with Growth Phase of Cryptococcus neoformans

Qualitative and quantitative profiles of phospholipids, neutral lipids, and fatty acid composition in Cr. neoformans during the growth phase were investigated in relation to pyrophosphatidic acid. A marked increase of the total lipid content, which depended on the accumulation of triglyceride in yeast cells with the growth, was observed. The total phospholipid contents in yeast cells remained almostly constant during the exponential phase and slightly decreased in the stationary phase. The major phospholipids of this yeast were phosphatidylcholine, phosphatidylethanolamine, phosphatidylinositol, phosphatidylserine, and cardiolipin, the next groups being pyrophosphatidic acid, phosphatidic acid, lysophos-phatidylcholine, and unidentified components. The amounts of phosphatidylcholine, phosphatidylinositol, and cardiolipin were fairly constant throughout the growth phase, but the amount of phosphatidylethanolamine increased and that of phosphatidylserine decreased with progressive growth. The pyrophosphatidic acid contents were 0.9~0.7% for total phospholipid during the growth phase. The major fatty acids of pyrophosphatidic acid were C_16:0, C_18:1, and C_18:2 acids. The changing patterns of fatty acid composition in pyrophosphatidic acid through the growth phase closely resembled that of phosphatidic acid, which contained larger amounts of C_18:1 acid (35~45%) than C_16:0 acid (30~25%) and C_18:2 acid (30~25%). Phosphatidylserine and phosphatidylinositol contained considerable amounts of saturated fatty acid (C_16:0 acid, more than 55%). On the other hand, phosphatidylcholine, phosphatidylethanolamine, and cardiolipin contained extremely large amounts of unsaturated fatty acid (C_18:1 and C_18:2 acid, 85ç90%).     

Influence of surface penetration on measured fluid force on a hand model

The purpose of this study was to quantify the effect of wave drag due to surface penetration on drag and lift forces (C_d and C_l) acting on a hand model. The values of C_d and C_l had been acquired to gain the hydrodynamic characteristics of the swimmer's hand and predict force on the swimmer's hand. These values have also been used to benchmark computational fluid dynamics analysis. Because the previous studies used a hand/forearm model which penetrated the water's surface, the values of C_d and C_l include the effect of the surface wave on the model. Wave formation causes pressure differences between the frontal and rear sides of a surface-penetrating model as a result of depressions and elevations in the water's surface. This may be considered as wave drag due to surface penetration. Fluid forces due to wave drag on the forearm should not be included in the measured C_d and C_l of a swimmer's hand that does not sweep near the water's surface. Two hand/forearm models are compared, one with the hand rigidly connected to the forearm. The other model was constructed to isolate the fluid forces acting on the hand from the influence of wave drag on the forearm. The measurements showed that the effect of wave drag on the hand model caused large increases in the values of C_d, up to 46–98% with lesser increases in C_l of 2–12% depending on the hand orientation. The present study provides an improved method to determine the values of C_d and C_l that eliminates the effect of wave drag on a hand/forearm model by isolating the measurement of fluid forces on the forearm of the hand/forearm model in order to separately acquire the forces on the hand.     

Kinetics of batch-wise enzymatic cycling system for mass production of chiral compound

Kinetics of batch-wise enzymatic cycling system (oxidoreductase-catalyzed reaction system involving enzyme-coupled cofactor regeneration) has been studied covering a broad range of the conserved total cofactor concentration, [C]₀ (=NAD(P)⁺?+?NAD(P)H), based on reasonable several assumptions. It is composed of two elementary reactions, i.e. product synthesis reaction and cofactor regeneration reaction, both of which have been expressed by Michaelis–Menten type rate equations. A novel dimensionless variable, r, has been introduced, which is defined as the concentration of one of the two cofactor components, [X] (NADH⁺ or NADPH⁺), divided by [C]₀, i.e. r .e[X]/[C]₀. The following results have been obtained. (1) The fundamental equation of the batch-wise enzymatic cycling system has been transformed to a differential equation whose formula is: dr/dT?=?N(r)/D(r) (N(r) and D(r) are quadratic equations of r having different coefficients). (2) It has been elucidated that the batch-wise enzymatic cycling system has two phases, an early short transient phase followed by a long phase in quasi-steady state (QSS). (3) In the enzymatic cycling system, r converges to a definite level regardless of any initial value of r. (4) In QSS, the definite level of r nearly equals the singular solution, r_singular, of the differential equation. (5) The actual rate of the targeted product (chiral compound) formation can be calculated by Michaelis–Menten equation in which the cofactor concentration is [C]₀×r_singular instead of [C]₀. r_singular has been proposed to name “redistribution factor”. (6) It is recommended that the “unit” of the cofactor regeneration enzyme be 2–3 times more used than the “unit” of the synthesis enzyme and that [C]₀ be 15–25 times more than the K_m value. Four special cases relating to the batch-wise enzymatic cycling system have been discussed.     

Fitness comparison between clones differing in their ability to produce sexuals in the aphid Thopalosiphum padi

This study aimed at evaluating the intrinsic rate of increase (r _m ) of clones of the cereal aphid Rhopalosiphum padi (L.) that differ in their ability to produce sexuals. The value of r _m was measured for wingless parthenogenetic females in experiments conducted at two temperatures (15 °C and 20 °C). We studied six holocyclic clones, five androcyclic clones and five anholocyclic clones and showed that life-cycle has no significant effect on the age at first reproduction, on fecundity nor on longevity. As a result there is no influence on (summer) fitness: on the one hand, holocyclic clones do not compensate their lower fitness in mild winters by a higher fitness during the summer. On the other hand, anholocyclic and androcyclic clones do not seem to obtain any advantage from living on a more restricted range of hosts: there appears to be no cost of polyphenism for holocyclic clones.     

Soil organic carbon dynamics jointly controlled by climate,carbon inputs,soil properties and soil carbon fractions

Soil organic carbon (SOC) dynamics are regulated by the complex interplay of climatic, edaphic and biotic conditions. However, the interrelation of SOC and these drivers and their potential connection networks are rarely assessed quantitatively. Using observations of SOC dynamics with detailed soil properties from 90 field trials at 28 sites under different agroecosystems across the Australian cropping regions, we investigated the direct and indirect effects of climate, soil properties, carbon (C) inputs and soil C pools (a total of 17 variables) on SOC change rate (r_C, Mg C ha^?1 yr^?1). Among these variables, we found that the most influential variables on r_C were the average C input amount and annual precipitation, and the total SOC stock at the beginning of the trials. Overall, C inputs (including C input amount and pasture frequency in the crop rotation system) accounted for 27% of the relative influence on r_C, followed by climate 25% (including precipitation and temperature), soil C pools 24% (including pool size and composition) and soil properties (such as cation exchange capacity, clay content, bulk density) 24%. Path analysis identified a network of intercorrelations of climate, soil properties, C inputs and soil C pools in determining r_C. The direct correlation of r_C with climate was significantly weakened if removing the effects of soil properties and C pools, and vice versa. These results reveal the relative importance of climate, soil properties, C inputs and C pools and their complex interconnections in regulating SOC dynamics. Ignorance of the impact of changes in soil properties, C pool composition and C input (quantity and quality) on SOC dynamics is likely one of the main sources of uncertainty in SOC predictions from the process‐based SOC models.     

The impact of bleaching on the metabolic contribution of dinoflagellate symbionts to their giant clam host

Bleaching (loss of symbiotic dinoflagellates) is known to significantly decrease the fitness of symbiotic marine invertebrates resulting in reduced growth, fecundity and survival. This report is the first to quantify the effects of bleaching on inorganic carbon (C_i) and ammonium flux, fixation and export of photosynthate to the host, in this case the giant clam Tridacna gigas. The 1998 bleaching event was found to decrease the zooxanthellae population 30‐fold when comparing bleached to non‐bleached clams. This resulted in significant increases in haemolymph C_i and decreases in haemolymph pH and glucose concentration, the predominant photosynthate exported from zooxanthellae in this symbiosis. There was also a decrease in the expression levels of host carbonic anhydrase, an enzyme involved in C_i transport to the zooxanthellae, and although host glutamine synthase levels were unaffected, the clams ability to assimilate ammonium was eliminated in bleached individuals, suggesting that photosynthate from the zooxanthellae is required for ammonium assimilation. In an artificial bleaching experiment haemolymph C_i (r² = 0.97), pH (r² = 0.94) and glucose levels (r² = 0.95) were correlated to zooxanthellae numbers during both bleaching and recovery. Recovery of the zooxanthellae population, was enhanced four‐fold by the addition of organic and inorganic nutrients, as were related haemolymph characteristics. These results highlight the profound physiological changes that occur in symbiotic organisms during and after a bleaching event.     

盐胁迫下赤霉素对黄瓜种子萌发及幼苗生长的影响

研究外源GA₃对盐胁迫下黄瓜种子萌发和幼苗生长的影响。结果表明,添加不同质量浓度GA₃的各处理,其发芽率、发芽势和发芽指数均显著高于NaCl胁迫处理,其中以100 mg/L GA₃处理的发芽势、发芽率和发芽指数最高,幼苗的叶面积、根长、根冠比也最大,同时叶片中叶绿素含量最高,幼苗叶片的光合速率(P_n)、气孔导度(G_s)、胞间CO₂摩尔分数(C_i)及蒸腾速率(T_r)等均达到最大;而当赤霉素的质量浓度为50 mg/L时,叶片中的POD活性为2 005 U/(g·min）,达最大值。     

长三角典型水稻土有机碳组分构成及其主控因子

准确把握水稻土有机碳组分构成特征及其主控因子,对定量化评价土壤有机碳质量和未来演变趋势具有重要意义。通过室内土壤呼吸培养实验结合有机碳三库一级动力学方程,模拟得到长三角地区典型水稻土剖面(0—100 cm)各土层有机碳组分含量及其分布特征;并利用主成分分析获取主控因子,建立有机碳组分回归预测模型。结果表明:水稻土活性碳、慢性碳和惰性碳含量随剖面深度增加而降低,上层土壤(0—40 cm)有机碳组分含量下降速度明显快于下层土壤(40—100 cm);水稻土活性碳构成比例不超过5.3%,惰性碳构成比例大于活性碳与慢性碳比例之和,达到60%以上,水稻土有机碳总量变异主要取决于慢性碳和惰性碳组分变异。因此,水稻土固碳重点在于慢性和惰性组分。同时,研究还发现水稻土类型和剖面深度主要在表层对有机碳组分含量和比例构成产生显著影响,土壤有机碳量、全氮和pH是影响水稻土有机碳组分含量分异的主控因子,利用主控因子可较好预测水稻土有机碳组分含量。     

Configurational statistics of polysaccharide chains. Part III. Linear β-(1 → 4′) xylan and mannan

The characteristic ratio C_N = 〈r²〉₀/Nl_v² of the β-D (1 → 4′)-linked polysaccharides xylan and mannan has been computed as a function of the angle τ at the bridge oxygen atom and the degree of polymerization N. The calculated values of the characteristic ratio C_N are very high relative to their free rotational dimensions. The characteristic ratio of these polysaecharides converges to the asymptotic value at low degree of polymerization at higher τ values. The low values of the calculated characteristic ratio of xylan compared to cellulose and mannan for the same τ value indicate that the former is more flexible and assumes a compact configuration. A pronounced difference in the values of the characteristic ratio C_N of cellulose and mannan has also been observed lower τ angles (<120°). On the other hand, nearly the same values of C_N have been obtained at higher τ angles (120°–125°), which suggests that, cellulose and mannan may have similar configuralons in certain solvents.     

Fatty Acid Compositions of Corynebacterium simplex Grown on 1-Alkenes

The utilization of 1-alkenes by Corynebacterium simplex ATCC 6946 was studied with respect to the characteristic fatty acid profiles resulting from the growth at the expense of these substrates.

It was indicated that the synthetic pathways of the cellular fatty acids in Corynebact. simplex grown on various n-alkanes or 1-alkenes changed markedly according to the chain lengths of the substrates. From shorter chain hydrocarbons (C₁₂, C₁₄) the fatty acids were found to be synthesized mainly via de novo synthesis pathway in a similar manner to those from glucose, while chain elongation and intact incorporation occurred to a very small extent. On the other hand, an intact incorporation mechanism was preferential in the cells grown on longer ones (C₁₆, C₁₈). When n-pentadecane or 1-pentadecene was used as the substrate, these three mechanisms seemed to operate simultaneously.     

Effects of Chain-length of Alkane Substrate on Fatty Acid Composition and Biosynthetic Pathway in Some Candida Yeasts

Cellular fatty acid compositions of Candida tropicalis pK 233 and Candida lipolytica NRRL Y -6795 and the time-course changes during yeast growth were studied using individual n-alkanes of various chain lengths (from C₁₁ to C₁₈) and a mixture of n-alkanes (C₁₁ to C₁₈) as a sole carbon source. Observed relationships of the chain-length of n-alkane substrate to time-course changes and final patterns of the fatty acid compositions of these yeasts, especially those of the cells grown on odd-carbon alkanes, indicated that “intact incorporation mechanism,” that is, accumulation of the fatty acid having the same chain-length as that of the alkane substrate used was predominant in the yeasts cultivated on a longer alkane such as n-heptadecane and n-octadecane. On the other hand, “chain elongation pathway” and “de novo synthesis pathway” following β-oxidation of substrate were simultaneously operative in the cells growing on a relatively shorter alkane such as undecane and dodecane.     

Mechanical stretch activates glycometabolism-related enzymes via estrogen in C2C12 myoblasts

Moderate exercise improves glycometabolic disorder and type 2 diabetes mellitus in menopausal females. So far, the effect of exercise-induced estrogen on muscular glycometabolism is not well defined. The current study was designed to explore the effect of mechanical stretch-induced estrogen on glycometabolism in mouse C₂C₁₂ myoblasts. The mouse C₂C₁₂ myoblasts in vitro were assigned randomly to the control (C), stretch (S), and stretch plus aromatase inhibitor anastrozole (SA) groups. Cells in the S group were stretched by the Flexcell FX-5000™ system (15% magnitude, 1 Hz frequency, and 6-hr duration) whereas those in the SA group were treated with 400 μg/ml anastrozole before the same stretching. Glucose uptake, estradiol levels, PFK-1 levels, and oxygen consumption rate were determined, and the expression of HK, PI3K, p-AKT, AKT, and GLUT4 proteins were semiquantified with western blot analysis. Compared to the control, the estradiol level, oxygen consumption rate, expression of HK, PI3K, and PFK-1 proteins, the ratio of p-AKT to AKT, and the ratio of GLUT4 in the cell membrane to that in the whole cell were higher in the S group. On the other hand, the estradiol level, glucose uptake, expression of PFK-1 and GLUT4 proteins, oxygen consumption rate, expression of HK protein, and the ratio of p-AKT/AKT were lower in the myoblasts in the SA group than those in the S group. The level of estradiol was positively correlated with glucose uptake (p < .01, r = .818). Therefore, mechanical stretch-induced estrogen increased the expression of glycometabolism-related enzymes and proteins in the mouse C₂C₁₂ myoblasts.     

A theory on the effect of low molecular salts on the dissociation of linear polyacids

A theoretical analysis is given on the effect of low molecular salts on the titration behavior of partially neutralized linear polyacids or polybases. On the basis of the additivity law experimentally and theoretically established on the activity of counterions in polyelectrolyte solutions containing salts, the chemical potential of alkali added for neutralization of polyacids is derived as a function of the salt concentration. The relation between the pH and the salt, concentration at constant degree of neutralization is expressed by pH(c_s) ? pH(0) = ({[? (γ_pC_a)/?C_a]/γ_os} ? 1) ln [1 + (γ_osC_s/γ_pC_A)] where C_a is the concentration of alkali, C₈, the concentration of salts, γ_p is the activity coefficient of counterions in the absence of salts and γ_os is that in the absence of polyelectrolytes. This relation is found to be in good agreement with experimental data obtained in synthetic linear polyelectrolytes as well as in rodlike charged proteins. Therefore, it is concluded that the titration behavior of linear polyions can be understood from the special feature of the integrated coulomb interaction between linear polyions and small ions which was essential for the additivity law. In addition, the screening effect of salts on the electric potential around the polyion is discussed.     

Effects of phenolic compounds on the growth and the fatty acid composition of Lactobacillus plantarum

The effects of different phenolic compound concentrations on the fatty acid composition of Lactobacillus plantarum isolated from traditional home-made olive brines were determined. Increasing amounts of caffeic and ferulic acids induced a gradual increase in the amounts of myristic, palmitoleic, stearic and 9,10-methylenehexadecanoic (C17Δ, where Δ represents the cyclopropane group) acid with a concomitant decrease of lactobacillic acid (C₁₉Δ). On the other hand, the addition of tannins induced an increase in the C₁₉Δ level at the expense of vaccenic acid content. The presence of acidic phenols and tannins also affected bacterial growth, inducing the most obvious effect with tannin at 1 g l⁻¹. Received: 1 July 1997 / Received revision: 9 September 1997 / Accepted: 15 September 1997     

Influence of avocado (Persea americana) Cx-cellulase on the structural features of avocado cellulose

Avocado (Persea americana Mill.) fruit produce copious quantities of the enzyme Cx-cellulase (EC 3.2.1.4) during ripening. The possibility that Cx-cellulase is able to disrupt cellulose microfibril oranization was investigated using molecular weight (M_r), x-ray diffraction, and ultrastructural analyses of cell walls from unripe avocado fruit incubated with the purified enzyme. Results indicate that Cx-cellulase causes a downshift in the M_r of unbranched cell-wall polymers in the M_r range of 10⁶–10⁷ Da. There is an increase in the proportion of crystalline cellulose, and cellulose fibrils appear to lose cohesiveness in response to enzyme activity. We propose that Cx-cellulase attacks avocado cellulose at accessible sites in the peripheral and integral noncrystalline regions of the microfibril, resulting in a loss of cohesiveness within the fibril structure and an alteration in the binding of associated cell-wall matrix polysaccharides. The initial loss of avocado mesocarp firmness during fruit ripening may be linked to the onset of Cx-cellulase activity.Abbreviations CMC carboxymethylcellulose - DMAC dimethylacetamide - DS developmental stage - M molecular weight - XG xyloglucan