Thysanoptera of Bulgaria

The present checklist includes data on the species composition, geographic distribution and feeding preferences of thrips species in Bulgaria. In total, 155 species in 48 genera are listed. Of these, 125 species belong to suborder Terebrantia and include 103 species of 33 genera in family Thripidae, 14 species of two genera in Aeolothripidae, seven species of two genera in Melanthripidae and one species in Fauriellidae. In suborder Tubulifera, 30 species of 10 genera in the single family Phlaeothripidae are listed. Of the 155 Bulgarian thrips species, 87.7% are phytophagous, 4.5% are obligate predators, 5.8% are mycophagous and 1.9% are with unknown feeding preferences. Fourteen pest species are listed for Bulgaria, of which Frankliniella occidentalis, Thrips tabaci and Haplothrips tritici are of economic importance. The list provides detailed information on the horizontal and vertical distribution of Thysanoptera in 5 regions and 45 subregions of Bulgaria. The present paper also includes an evaluation of the biodiversity of Thysanoptera and the extent to which each region of the country has been studied.     

Veillonella,Firmicutes: Microbes disguised as Gram negatives

The Firmicutes represent a major component of the intestinal microflora. The intestinal Firmicutes are a large, diverse group of organisms, many of which are poorly characterized due to their anaerobic growth requirements. Although most Firmicutes are Gram positive, members of the class Negativicutes, including the genus Veillonella, stain Gram negative. Veillonella are among the most abundant organisms of the oral and intestinal microflora of animals and humans, in spite of being strict anaerobes. In this work, the genomes of 24 Negativicutes, including eight Veillonella spp., are compared to 20 other Firmicutes genomes; a further 101 prokaryotic genomes were included, covering 26 phyla. Thus a total of 145 prokaryotic genomes were analyzed by various methods to investigate the apparent conflict of the Veillonella Gram stain and their taxonomic position within the Firmicutes. Comparison of the genome sequences confirms that the Negativicutes are distantly related to Clostridium spp., based on 16S rRNA, complete genomic DNA sequences, and a consensus tree based on conserved proteins. The genus Veillonella is relatively homogeneous: inter-genus pair-wise comparison identifies at least 1,350 shared proteins, although less than half of these are found in any given Clostridium genome. Only 27 proteins are found conserved in all analyzed prokaryote genomes. Veillonella has distinct metabolic properties, and significant similarities to genomes of Proteobacteria are not detected, with the exception of a shared LPS biosynthesis pathway. The clade within the class Negativicutes to which the genus Veillonella belongs exhibits unique properties, most of which are in common with Gram-positives and some with Gram negatives. They are only distantly related to Clostridia, but are even less closely related to Gram-negative species. Though the Negativicutes stain Gram-negative and possess two membranes, the genome and proteome analysis presented here confirm their place within the (mainly) Gram positive phylum of the Firmicutes. Further studies are required to unveil the evolutionary history of the Veillonella and other Negativicutes.     

More Sex-Determination Mutants of CAENORHABDITIS ELEGANS

Sex determination in Caenorhabditis elegans is controlled by the X chromosome: autosome ratio, i.e. 2A;XX animals are hermaphrodite, and 2A;XO animals are male. A procedure for isolating 2A;XO animals that are transformed into hermaphrodites has been developed. Nine mutations causing this transformation have been obtained: eight are recessive, and all of these fall into a new autosomal complementation group, her-1 V. The remaining mutation (her-2) is dominant and has a genetic map location similar to that of tra-1 III. Recessive mutations of tra-1 cause the reverse transformation, transforming 2A;XX animals into males. Therefore, the her-2 mutation may result in constitutive expression of tra-1. Mutations in her-1 are without effect on XX animals, but the her-2 mutation prevents sperm production in both XX and XO animals, in addition to its effect on the sexual phenotype of XO animals. The epistatic relationships between tra and her genes are used to deduce a model for the action of these genes in controlling sex determination.     

THE NEW LICHEN FAMILYGLOEOHEPPIACEAEAND ITS GENERAGLOEOHEPPIA,PSEUDOPELTULAANDGUDELIA (LICHINALES)

Gloeoheppiais re-established as a separate taxon; the genus differs fromHeppiain apothecial development and thallus structure.Gloeoheppiaand the related generaGudeliaHenssen andPseudopeltulaHenssen described here are placed in the new familyGloeoheppiaceaein theLichinales. In habit, the genera ofGloeoheppiaceaeresemble species ofHeppiaandPeltula, whereas in apothecial development they correspond to some extent to theLichinaceae. The speciesGloeoheppia polysporaHenssen,Gloeoheppia rugosaHenssen,Pseudopeltula dicyanophoraHenssen,Pseudopeltula heppioidesHenssen,Pseudopeltula myriocarpaHenssen andGudelia mexicanaHenssen, are described for the first time. InGloeoheppiaceaethe thalli are ecorticate and the hyphae reticulately branched. The prototunicate asci contain eight, or up to 16, colourless and simple, occasionally two-celled spores. In species ofPseudopeltula, the apothecia are of a complex structure. The cyanobionts are small and single-celled; inP. dicyanophora‘internal cephalodia’ with an additional, filamentous cyanobiont are formed. Lectotypes are designated forEndocarpon turgidumAch. andHeppia furvaHue in Patouill.     

Ultrastructure of the larval midgut of Bittacus planus (Mecoptera: Bittacidae) and Neopanorpa longiprocessa (Mecoptera: Panorpidae)

Bittacidae and Panorpidae are the two largest families in Mecoptera. The larvae of Bittacidae are different from those of Panorpidae in external morphology and habits, and have an interesting habit of spraying the body surface with soil through the anus. However, it remains unknown to date whether the larval midguts are different in structure between the two families. Here the ultrastructure of the larval midguts of the hangingfly Bittacus planus Cheng and the scorpionfly Neopanorpa longiprocessa Hua & Chou were compared using light, scanning, and transmission electron microscopy. The midguts of both species are simple tubes of single layered epithelia with digestive and regenerative cells but without diverticula. The basal plasma membrane of epithelial cells exhibits infolding in B. planus, but is closely apposed to its basal lamina in N. longiprocessa. Lymph spaces are present between adjacent epithelial cells in B. planus, but are absent in N. longiprocessa. The regenerative cells are scattered among the digestive cells in B. planus, but are aggregated in N. longiprocessa. The longitudinal muscle bands are compact in B. planus, but are sparse in N. longiprocessa. The compact longitudinal muscle bands are likely associated with their soil-spraying habit in Bittacidae.     

Mixoploidy in wild and cultivated species of Cruciferae capable of hybridizing with rapeseed Brassica napus

The number of chromosomes in cells of the root meristem of seedlings of wild and cultivated species of Cruciferae plants capable of hybridizing with rapeseed Brassica napus is studied. Only diploid metaphases are observed in seedlings of Brassica juncea, Diplotaxis tenuifolia, and Raphanus raphanistrum. In B. napus and B. cretica roughly 5% of the seedlings are mixoploid. Diploid cells are dominant in the mixoploids, though hypo-and hyperdiploids are also encountered. Nearly 20% of the seedlings of B. campestris and R. sativum are mixoploid, a significant fraction of which contains di-triploid chimeras. In B. nigra less than one-half of the seedlings are truly diploid, the majority of the plants being mixoploid. Seedlings containing preferentially tetraploid and triploid cells are dominant. The biological significance and possible causes of the newly discovered mixoploidy are discussed.     

Synthesis of internal re-initiation fragments of beta-galactosidase in vitro and in vivo.

Internal re-initiation polypeptides which are products of the lacZ gene of Escherichia coli have been synthesized in a DNA-directed cell-free protein synthesis system. Some of the properties of these protein fragments have been characterized. The de novo synthesized re-initiation proteins, unlike both in vitro synthesized wild-type β-galactosidase and nonsense termination fragments, are insoluble when synthesized at 37 °C, but soluble if synthesis takes place at 25 °C. The same re-initiation proteins which are made in vivo have been detected in vitro. Unlike their in vivo counterparts, which are degraded rapidly, the in vitro synthesized restart proteins are completely stable for at least one hour following their synthesis. Both in vivo and in vitro, the re-initiation proteins are not synthesized from DNA containing a wild-type Z gene, but require a specific nonsense mutation in order to be expressed. Furthermore, the location of the mutation within the Z gene is very important in determining whether or not re-initiation will occur at a given site.Several nonsense mutations which do not result in the synthesis of detectable amounts of restart protein in vivo produce specific re-initiation polypeptides in vitro. These restart proteins display many of the same properties as do those which are made both in vivo and in vitro: they are not made from wild-type DNA, and they are only made from DNA containing a specific nonsense mutation. One of these mutations is 118, which is an extreme polar mutation in vivo. Another is 545, which synthesizes a restart protein in vivo if, and only if, it is coupled with a secondary mutation, π(1). π(1) thus appears to be necessary for the synthesis of a particular re-initiation protein in vivo but unnecessary for the synthesis of the same protein in vitro. The efficiencies of re-initiation vary at the different sites, but in all cases are less than the initiation frequency at the start of the gene. The experiments thus show that when complicating factors, such as polarity and protein degradation, are eliminated, translational re-initiation can be detected at many sites in the lacZ gene.     

A Taxonomic Review of the Genera of the Aphelenchoidea (Fuchs, 1937) Thorne, 1949 (Nematoda: Tylenchida)

This generic level taxonomic review of the nematode superfamily Aphelenchoidea is based upon a study of specimens from 24 of the 28 described genera. The diagnoses of these genera are presented, and some are emended with new information. One new genus, Huntaphelenchoides, and five new combinations are proposed. The families Paraphelenchidae and Anomyctidae are placed in synonymy with Aphelenchidae and Aphelenchoididae, respectively. The genera Asteroaphelenchoides and Pseudaphelencboides are placed in synonymy under the genus Aphelenchoides. Rare male and/or female specimens of Peraphelenchus, Anomyctus, Laimaphelenchus, Aphelenchus, Cryptaphelenchoides, Megadorus, Tylaphelenchus, and Entaphelenchus, are redescribed and illustrated. Four plates, containing 106 original drawings of the males, females, stylets, and spicules of representatives of 22 aphelenchoid genera, are presented.     

Some heterostrophic gastropods from Triassic St. Cassian Formation with a discussion on the classification of the Allogastropoda

Fifteen species of Heterostropha are described, 12 of them for the first time. All are newly interpreted with regard to their taxonomic relation to fossil and living gastropods. The Streptacidoidea with long Paleozoic history are represented in the Late Triassic St. Cassian Formation by several genera that can be differentiated into four families. The Ebalidae are represented byEbala, with smooth protoconch, Cassianebalidae byCassianebala andLoxebala with axially ornamented protoconch. The Donaldinidae of St. Cassian are represented by one species ofDonaldina and two ofNeodonaldina that stand in the continuation of Paleozoic species ofDonaldina. Architectonicoidea with shells coiled in a plane and Valvatoidea appear in the St. Cassian fauna without known Paleozoic relation. In the former superfamily the Architectonicidae can be recognized in the genusRinaldoconchus with two species. Cassianaxidae withCassianaxis, Amphitomariidae withAmphitomaria, Stuoraxidae withStuoraxis andAmpezzogyra have a sinistral protoconch and planispirally coiled dextral teleconchs. They all resemble different modern species that have similarly small shells. Modern Hyalogyrinidae have withAlexogyra a new representative from the Triassic. The Valvatoidea are represented with the generaCarboninia andBandellina of the Cornirostridae in the Triassic representatives. The relation of described species in the system of the Heterostropha is discussed.     

An unusually rich scuttle fly fauna (Diptera,Phoridae) from north of the Arctic Circle in the Kola Peninsula,N. W. Russia

64 species of Phoridae, in 6 genera, are reported from the Kola Peninsula, north of the Arctic Circle. The new species Megaselia elenae and Megaselia kozlovi are described. 33 species of Megaselia, only known from females, are given code numbers. Keys to the species of all the females of Megaselia and Phora are provided; and also a key to the males European Megaselia species with a notopleural cleft.     

Publication of descriptions of novel bacterial taxa in <Emphasis Type="Italic">Antonie van Leeuwenhoek</Emphasis>

The species from the order Neisseriales are currently distinguished from other bacteria on the basis of branching in 16S rRNA gene trees. For this order containing a single family, Neisseriaceae, no distinctive molecular, biochemical, or phenotypic characters are presently known. We report here detailed phylogenetic and comparative analyses on the 27 genome sequenced species of the order Neisseriales. Our comparative genomic analyses have identified 54 conserved signature indels (CSIs) in widely distributed proteins that are specific for either all of the sequenced Neisseriales species or a number of clades within this order that are also supported by phylogenetic analyses. Of these CSIs, 11 are specifically present in all of the sequenced species from this order, but are not found in homologous proteins from any other bacteria. These CSIs provide novel molecular markers specific for, and delimiting, this order. Twenty-one CSIs in diverse proteins are specific for a group comprised of the genera Neisseria, Eikenella, Kingella, and Simonsiella (Clade I), which are obligate host-associated organisms, lacking flagella and exhibiting varied morphology. The species from these genera also formed a strongly supported clade in phylogenetic trees based upon concatenated protein sequences; a monophyletic grouping of these genera and other genera displaying similar morphological characteristics was also observed in the 16S rRNA gene tree. A second clade (Clade II), supported by seven of the identified CSIs and phylogenetic trees based upon concatenated protein sequences, grouped together species from the genera Chromobacterium, Laribacter, and Pseudogulbenkiania that are rod-shaped bacteria, which display flagella-based motility and are capable of free living. The remainder of the CSIs were uniquely shared by smaller groups within these two main clades. Our analyses also provide novel insights into the evolutionary history of the Neisseriales and suggest that the CSIs that are specific for the Clade I species may play an important role in the evolution of obligate host-association within this order. On the basis of phylogenetic analysis, the identified CSIs, and conserved phenotypic characteristics of different Neisseriales genera, we propose a division of this order into two families: an emended family Neisseriaceae (corresponding to Clade I) containing the genera Alysiella, Bergeriella, Conchiformibius, Eikenella, Kingella, Neisseria, Simonsiella, Stenoxybacter, Uruburuella and Vitreoscilla and a new family, Chromobacteriaceae fam. nov., harboring the remainder of the genera from this order (viz. Andreprevotia, Aquaspirillum, Aquitalea, Chitinibacter, Chitinilyticum, Chitiniphilus, Chromobacterium, Deefgea, Formivibrio, Gulbenkiania, Iodobacter, Jeongeupia, Laribacter, Leeia, Microvirgula, Paludibacterium, Pseudogulbenkiania, Silvimonas, and Vogesella).     

Six new species of Philiris R?ber, 1891 (Lepidoptera,Lycaenidae) from Papua New Guinea

Six new species of the large lycaenid genus Philiris Röber, 1891 (Philiris petriei sp. n., Philiris bubalisatina sp. n., Philiris baiteta sp. n., Philiris radicala sp. n., Philiris hindenburgensis sp. n. and Philiris parsonsi sp. n.), from Papua New Guinea, are described and illustrated, as are the early stages of the former taxon, with Litsea sp. near callophyllantha K. Schum (Lauraceae) recorded as the larval food plant. The holotypes of all but the latter are deposited in the ANIC, with that of P. parsonsi located in the BMNH. The external facies and male genitalia of all new species are compared in detail to putative known related species, and the types of these, in nearly all cases, are also illustrated.     

Ribosomal and RPB2 DNA sequence analyses suggest that Sporidesmium and morphologically similar genera are polyphyletic

Sporidesmium and morphologically similar dematiaceous, hyphomycetous genera are characterised by holoblastic phragmoconidia produced on proliferating or non-proliferating conidiophores. They include a number of asexual (anamorphic) genera taxonomically segregated from Sporidesmium sensu lato and are similar in having schizolytic conidial secession. The taxonomy of these ubiquitous asexual fungi and their affinities with known Ascomycetes are, however, still obscure. This study incorporates a phylogenetic investigation, based on the LSU nu-rDNA and RNA polymerase II second largest subunit (RPB2) gene sequence, to assess the possible familial placement of Ellisembia, Linkosia, Repetophragma, Sporidesmiella, Sporidesmium and Stanjehughesia, and justify whether anamorphic characters are proper phylogenetic indicators. Phylogenies provide conclusive evidence to suggest that Sporidesmium is not monophyletic and species are phylogenetically distributed in two major ascomycete classes, Dothideomycetes and Sordariomycetes. Morphologies currently used in their classification have undergone convergent evolution and are not phylogenetically reliable. The possible teleomorphic affinities of these anamorphic genera are discussed in light of morphology and molecular data. As these anamorphs, in most cases, are the sole known morph of the holomorph, it is proposed that in the absence of or failure to detect their teleomorphic phase, the anamorph names should be used for the holomorph.     

Taxonomic survey of fossil isocrinids with a list of the species found in the USSR

The taxonomic scheme of the two families of the order Isocrinida (Isocrinidae and Pentacrinidae) is given. The first family is divided at five subfamilies: Balanocrininae, Isocrininae, Metacrininae, Diplocrininae and Isselicrininae. Six genera are included in subfamily Balanocrininae: Balanocrinus (four species found in USSR), Laevigatocrinus (USSR: 3 species), Margocrinus (USSR: 4 species), Percevalicrinus (USSR: 5 species), Singularocrinus nov. gen. (monotypic) and Terocrinus nov. gen. (USSR: 1 species). Five fossil genera are included in subfamily Isocrininae: Chariocrinus (USSR: 1 species), Chladocrinus (USSR: 4 species), Isocrinus (USSR: 6 species), Raymondicrinus nov. gen. (Oligocene of USA : 2 species) and Tyrolecrinus nov. gen. (6 triassic species). Fossil representatives of three genera, namely, Metacrinus (Miocene-Recent), Nielsenicrinus (USSR: 4 species) and Cainocrinus (USSR: 1 species) are noted in subfamily Metacrininae. Five genera are included in subfamily Isselicrininae: Austinocrinus (USSR: 5 species), Buchicrinus (USSR: 5 species), Doreckicrinus (USSR: 1 species?), Isselicrinus (USSR: 4 species) and Praeisselicrinus (USSR: 1 species). Two genera are included in family Pentacrinidae: Pentacrinus (USSR: 1 species) and Seirocrinus (USSR: 4 species). Besides, the localities of 24 isocrinid species, systematic position of which is unknown, are listed (from Triassic upon Cretaceous). Three erroneous attributions to Isocrinida in USSR are pointed out. In the conclusion an outline of the phylogeny of the Isocrinida is discussed. For a majority of the wide-spread species in USSR figures are given.     

A revision of the New World species of Gymnoclasiopa Hendel (Diptera,Ephydridae)

Species of the shore-fly genus Gymnoclasiopa Hendel from the New World are revised, including Gymnoclasiopa grecorum sp. n. (Alaska. Juneau: Gastineau Channel, Thane Road (S Juneau; 58°16.9''N, 134°22.4''W)) and Gymnoclasiopa matanuska sp. n. (Alaska. Matanuska-Susitna: Palmer (Matanuska River; 61°36.5''N, 149°04.1''W)). We also clarify the status of previously described species, including those now discovered to have Holarctic distributions and/or for which sexual dimorphism was not appreciated and the species was described twice, including Gymnoclasiopa montana (Cresson) as a syn. n. of Gymnoclasiopa bohemanni (Becker). Two species, Gymnoclasiopa bella (Mathis), comb. n., and Gymnoclasiopa chiapas (Mathis), comb. n., are transferred from Ditrichophora to Gymnoclasiopa, and Gymnoclasiopa cana Cresson stat. rev. and Ditrichophora canifrons Cresson, stat. rev. are returned to Ditrichophora, the genus in which Cresson originally described them. A neotype is designated for Gymnoclasiopa tacoma to stabilize the nomenclature of this species. The two excluded species, Ditrichophora cana and Ditrichophora canifrons, are diagnosed and distributional data are also provided. For all known New World species of Gymnoclasiopa, structures of the male terminalia are described for the first time and are fully illustrated. Detailed locality data and distribution maps are also included. To provide context and also to facilitate identification, diagnoses are included for the tribe Discocerinini and genus in addition to a key to the genera and species occurring in the New World.     

Lepidasthenia loboi sp. n. from Puerto Madryn,Argentina (Polychaeta,Polynoidae)

Among polychaetes, polynoids have the highest number of symbiotic species found living with a wide variety of marine invertebrates, including other polychaetes. Lepidasthenia Malmgren, 1867 and Lepidametria Webster, 1879 were regarded as synonyms but belong to different subfamilies, although both have species associated with thelepodid or terebellid polychaetes. In this contribution Lepidasthenia loboi sp. n. is described from several specimens associated with the thelepodid Thelepus antarcticus Kinberg, 1867, collected on a rocky shore near Puerto Madryn, Argentina. Lepidasthenia loboi sp. n. can be confused with Lepidasthenia esbelta Amaral & Nonato, 1982 because both live with Thelepus, are of similar sizes with similar pigmentation patterns, and have giant neurochaetae. However, in Lepidasthenia loboi sp. n. all eyes are of the same size, cephalic and parapodial cirri are tapered and mucronate, the second pair of elytra is larger than the third, the ventral cirri arise at the base of parapodia such that they do not reach chaetal lobe tips, and neuraciculae are tapered. On the contrary, in Lepidasthenia esbelta the posterior eyes are larger than anterior ones, cephalic and parapodial appendages are swollen subdistally, the second and third pairs of elytra are of the same size, the ventral cirri arise medially such that their tips reach the neurochaetal lobe tips, and the neuraciculae have falcate tips. Some comments about other genera in the Lepidastheniinae, a simplified key to its genera, and a key to Lepidasthenia species with giant neurochaetae are also included.     

Identification of Dmrt genes and their up-regulation during gonad transformation in the swamp eel (Monopterus albus)

The swamp eel is a teleost fish with a characteristic of natural sex reversal and an ideal model for vertebrate sexual development. However, underlying molecular mechanisms are poorly understood. We report the identification of five DM (doublesex and mab-3) domain genes in the swamp eel that include Dmrt2, Dmrt2b, Dmrt3, Dmrt4 and Dmrt5, which encode putative proteins of 527, 373, 471, 420 and 448 amino acids, respectively. Phylogenetic tree showed that these genes are clustered into corresponding branches of the DM genes in vertebrates. Southern blot analysis indicated that the Dmrt1–Dmrt3–Dmrt2 genes are tightly linked in a conserved gene cluster. Notably, these Dmrt genes are up-regulated during gonad transformation. Furthermore, mRNA in situ hybridisation showed that Dmrt2, Dmrt3, Dmrt4 and Dmrt5 are expressed in developing germ cells. These results are evidence that the DM genes are involved in sexual differentiation in the swamp eel.     

Cytogenetics of the South American DROSOPHILA MULLERI Complex: The MARTENSIS Cluster. More Interspecific Sharing of Inversions

Three Drosophila mulleri complex species have been found to be endemic to the cactus regions of northern South America. The three species are morphologically distinct, and no hybridization between species has been found in either the laboratory or nature. An analysis of their salivary gland chromosomes revealed that they evolved from a single cytological population, subspecies F of the ancestor of the D. mulleri complex, and comprise a cluster of sister species that are homozygous for inversions not found elsewhere. Within the martensis cluster are also found several inversions that are unique for these species, but have segregated out among the three species. Thus 2f² is found in martensis and starmeri, but not in uniseta, while 2t⁶, 3v and 3w are found in starmeri and uniseta, but not in martensis. This is analogous to the situation found within the remainder of the mulleri complex species, all the members of which share homozygosity for six other inversions. An interpretation of the cytological evolution of the martensis cluster is proposed.