Purification of the rice embryo lectin and its binding to nitrogen-fixing bacteria from the rhizosphere of rice

A lectin was purified from rice embryos by aqueous acid extraction of crude embryo powder, followed by ammonium sulfate precipitation, affinity chromatography on agarose p-aminophenyl-beta-D-N-acetylglucosamine and gel-filtration on AcA 54. Its homogeneity was checked by polyacrylamide gel electrophoresis, gel-filtration and immunological methods. The hemagglutinating activity of the purified rice lectin was 0.02 micrograms/ml. This lectin labelled with [14C] acetic anhydride was shown to interact in vitro with different bacteria isolated from the rhizosphere of rice. The most efficient binding was obtained with Beijerinckia V.. The affinity constant Ka was (1.04 +/- 0.30) X 10(7) M-1 and each bacterium contained 1660 +/- 150 lectin receptor sites. In contrast, no interaction between bacteria isolated from the rhizosphere of maize or E. coli K 12 and rice lectin was evidenced.     

元阳梯田地方水稻品种根部内生菌及根际微生物的分离与鉴定

采用组织分离法和土壤稀释涂板法,对元阳哈尼梯田2个地方品种‘月亮谷’和‘红脚老粳’的根部内生细菌及根际土壤细菌进行了分离,研究元阳梯田传统水稻品种特殊的内生菌组成.结果表明: 试验共得到399个菌株.经形态特征及生理生化鉴定,月亮谷根部和其根际土壤分别分离到8和5个属,其中5个属是共有的;红脚老粳的根部和其根际土壤中分别分离到10和7个属,其中6个属是共有的.经分子生物学鉴定,月亮谷根部分离到11个种和5个属,根际土壤分离到8个种和4个属,其中5个种和4个属是共有的;红脚老粳根部分离到9个种和5个属,根际土壤分离到10个种和3个属,其中4个种和2个属是共有的.通过分子生物学鉴定,大部分菌株都可以鉴定到种,而通过形态及生理生化特性只能初步鉴定到属,但两种方法在属层次上的鉴定结果基本一致.元阳地方水稻根部内生细菌及根际土壤细菌具有一定的种属同源性与特异性.     

Gnotobiotic cultures of rice plants up to ear stage in the absence of combined nitrogen source but in the presence of free living nitrogen fixing bacteriaAzotobacter vinelandii andRhodopseudomonas capsulata

Summary An all glass tight growth chamber, entirely sterilizable, has been constructed to carry out axenic and gnotobiotic cultures of rice plants (Oryza sativa L.). When grown in liquid medium and in the absence of combined nitrogen but in the presence of the diazotrophsAzotobacter vinelandii andRhodopseudomonas capsulata, rice plants exhibited a complete biological cycle from germination up to ear stage, during a period of time similar to the one encountered in french paddy soil of Camargue. In one experiment, mannitol was given to rice culture medium together withAzotobacter vinelandii andRhodopseudomonas capsulata. In another experiment, mannitol was not given together with Rhodopseudomonas, and still positive nitrogen gain was obtained, although it was less than culture with mannitol. When¹⁵N labeled cells of Rhodopseudomonas were added in rice culture medium,¹⁵N was partly transferred to rice plant. Among the nitrogen substances excreted from the bacteria in the rhizosphere medium, large organic molecules were shown to be the most abundant in our experimental conditions. Moreover, the concentration of free ammonia or aminoacids present in the rice rhizosphere were always compatible with a bacterial nitrogenase activity.     

Population dynamics of a motile and a non-motile Azospirillum lipoferum strain during rice root colonization and motility variation in the rhizosphere

Abstract: Azospirillum lipoferum 4B and non-motile A. lipoferum 4T have been simultaneously isolated from rice rhizosphere at the same frequency. A. lipoferum 4T showed stable morphological and metabolic traits which are atypical for A. lipoferum species such as lack of motility, carbohydrate metabolism and laccase activity. Inoculation experiments showed that A. lipoferum 4T, but not A. lipoferum 4B, needed rice roots to stabilize in sterile soil. Both strains were able to colonize efficiently rice roots (10⁸ cfu g⁻¹ fresh roots) but motile form 4B remained dominant. In spite of their phenotypical differences, A. lipoferum 4B and 4T co-existed without exclusion in sterile soil (planted or not) and rice rhizosphere. Inoculation of rice roots with A. lipoferum 4B showed that rice rhizosphere enhanced the frequency of appearance of stable non-motile forms (40%). This percentage was weaker in plantlet growth medium (4%). However, these non-motile bacteria kept the same biochemical traits than the motile parental strain 4B (carbohydrates metabolism, laccase activity).     

Einfluß der Behandlung von Rübensaatgut mit Rhizosphärebakterien auf den Befall durch Pilze der Gattung Pythium I. Antagonistische Wirkung verschiedener Bakterienisolate gegenüber Pythium spp.

Abstract The influence of a seed-dressing with rhizosphere bacteria on the infection of sugarbeet by fungi of the genus Pythium I. Antagonistic effect of different bacterial isolates towards Pythium spp.
Seed treatment with selectively isolated rhizosphere bacteria from the fluorescent pseudomonad group can protect sugar beet seedlings from damping-off caused by species of Pythium. The antagonistic rhizobacteria were equally effective in different soil substrates, both unsterilized and steam-sterilized. Antagonistic activity of an isolate was similar within seeds of a sugarbeet cultivar but different when different cultivars were compared. The number of bacteria adhering to the seed of eachcultivar which influenced the level of antagonism to Pythium infection, varied with seed morphology. A mixture of the three different isolates did not increase antagonistic activity when compared to the activity of the isolates individually.     

脲酶抑制剂/硝化抑制剂对植稻土壤中尿素N行为的影响

采用自制根盒试验,主要研究了脲酶抑制剂氢醌（HQ）,硝化抑制剂双氰胺（DCD）及二者组合对离水稻根际不同距离处NH4^--N和NO3^-N分布的影响,结果表明,DCD及其与HQ组合均能显著促进稻株地上部分生长,始终显著降低水稻根际与近根际土中NH4^ -N含量直至施肥后60d,施肥后20d时,DCD及其与HQ组合可使非根际土中NH4^ -N含量显著增加,随后,却出现相反现象,施肥后20d时,距根际不同距离的土壤中,配施DCD或DCD＋HQ处理均能显著降低NO3^-N含量,随后,近根际和非根际仍保持上述现象直至施肥后40d;同未施DCD处理相比,根际土壤却较早出现NO3^--N含量高峰,正好与水稻N营养需求时期相一致,因此,DCD及其与HQ组合可减少水稻根际环境下尿素N损失潜势,通过不种稻土壤和距根际3cm处的土壤中尿素无机氮形态分布的差异,充分显示了研究水稻根际土壤氮素转化及相关抑制剂对其影响时,以取离根际3cm外的土壤作为非根际明显优于不种稻土壤。     

Types and properties of some bacteria isolated from hypersaline soils

Five rhizosphere soil samples from the dominant xerophytic plants, and nearby root-free soil samples were obtained from a series of hypersaline soils (5.0–10.7% NaCl) from sites near Alicante in Spain. Physico-chemical analyses were made, and the bacterial flora estimated using three different plating media. Counts from rhizosphere soil were always significantly higher than those from root-free soils. A total of 211 strains isolated were purified and identified to genus level; 12 could not be classified. The range of salt concentration allowing growth was determined for each isolate, but this did not correlate with the salt content of the soil habitat. Most isolates appeared to be typical moderate halophiles (with optimum growth between 5 and 15% salts), but about half of them grew on normal media with only 0.9% naCl, a notable difference from moderately halophilic aquatic bacteria. Extreme halophiles were rare but this may have been due to an insufficient incubation period.     

水稻和稗草共生土壤微生物生物量碳及酶活性的变化

以稻田稗草、化感水稻PI312777和普通水稻辽粳9为试材,研究了田间稗草和水稻1∶1共生条件下,土壤微生物生物量碳及脱氢酶、脲酶和转化酶活性的变化.结果表明：在稗草 的干扰下,化感水稻PI312777根区土壤微生物生物量碳含量比单作减少了 50.52％（P<0.01）,而行间土壤微生物生物量碳含量增加;普通水稻辽粳9根区土壤 微生物生物量碳含量比单作减少了38.99％（P<0.01）,但其行间土壤微生物生物量碳含量无明显变化.两个水稻品种根区土壤脱氢酶活性均被显著抑制（P<0.05）,下降率都在20％以上;PI312777根区土壤脲酶和转化酶活性均被显著促进（P<0.01）;而辽粳9根区土壤转化酶活性也被显著抑制（P<0.01）,但脲酶活性无明显变化.化感水稻根区土壤微生物生物量碳含量的显著减少及脲酶、转化酶活性的增加是其化感特性的表现,表明土壤微生物和酶均参与了水稻和稗草的种间作用,化感水稻具有抗稗草干扰的明显优势.     

Biodiversity of rice (Oryza sativa L.) and sugarcane (Saccharum officinarum L.) rhizosphere pseudomonads

Fluorescent pseudomonads were isolated from the rhizosphere of rice and sugarcane and examined for their biodiversity. All fifty strains of the fluorescent pseudomonads produced indole acetic acid. Among these pseudomonads, halves of sugarcane rhizosphere isolates and one isolate from the rice rhizosphere exhibited phosphate solubilization activity. On the contrary, majority of the rice rhizosphere pseudomonads, and one isolate from sugarcane rhizosphere exhibited antifungal activity. These fluorescent pseudomonads were further classified based on their growth and biochemical characteristics. Those isolates that had same biochemical characteristics were distinguished by random amplification of polymorphic DNA (RAPD). These biochemical and molecular biological methods clearly differentiated fluorescent Pseudomonads of rice and sugarcane rhizosphere.     

Survival of Azorhizobium caulinodans in the Soil and Rhizosphere of Wetland Rice under Sesbania rostrata-Rice Rotation

The survival of indigenous and introduced strains of Azorhizobium caulinodans in flooded soil and in the rice rhizosphere, where in situ Sesbania rostrata was incorporated before the rice crop, is reported. The azorhizobia studied were both root and stem nodulating. In a pot experiment, two crop cycles each of inoculated and noninoculated Sesbania-rice were compared with two crop cycles of flooded fallow-rice. In a field experiment, the effect of repeated incorporation of in situ S. rostrata in the Sesbania-rice sequence was studied. Soils in which inoculated S. rostrata was incorporated contained about 3,000 times more azorhizobia than did soils in the flooded fallow treatment and about 50 times more azorhizobia than did soils in the noninoculated Sesbania treatment. Azorhizobial numbers in the inoculated Sesbania treatment declined toward rice harvest but remained much higher than in the flooded fallow-rice treatment. Repeated incorporation of S. rostrata increased the population density of indigenous soil azorhizobia, whereas the population of inoculated strain ORS571 (Str^r Spc^r) declined to an undetectable level; this finding suggested low competitiveness by the introduced strain. In the incorporated Sesbania treatment, the rice rhizosphere harbored significantly more A. caulinodans and supported higher nitrogenase activity per plant than did the rhizosphere of the flooded fallow-rice treatment. Sterile rice seedlings inoculated with A. caulinodans showed nitrogenase activity comparable to that of seedlings inoculated with Azospirillum lipoferum 34H, a rice root isolate. Rhizobia from Sesbania aculeata, Sesbania sesban, a Trifolium sp., and Vigna unguiculata did not support appreciable nitrogenase activity.     

不同品种牡丹对丛枝菌根真菌群落结构的影响

对山东菏泽赵楼牡丹园栽培的不同品种牡丹(Paeonia suffruticosa)根围丛枝菌根(ar-buscular mycorrhiza,AM)真菌孢子密度、种属构成、种丰度、分布频度、物种多样性指数及其物种组成相似性等进行了研究.结果表明:不同品种牡丹根围AM真菌的种属构成、种丰度和分布频度等均不相同,其中,从‘凤丹'和‘赵粉'根围中各分离到10种AM真菌,从‘乌龙捧盛'和‘洛阳红'根围中分离到9种,从‘胡红'根围中分离到8种;‘凤丹'根围AM真菌孢子密度最高,为59个·50 g-1土,‘胡红'最低,为47个·(50 g)-1土;‘赵粉'的物种多样性指数最高(1.89),‘胡红'最低(1.71).‘凤丹'和‘胡红'的菌根侵染率最高,为63.6%,‘乌龙捧盛'最低,为52.7%.不同牡丹品种之间AM真菌种类组成的相似性系数在0.71～0.95,其中‘乌龙捧盛'和‘凤丹'的相似性系数最高(0.95),而‘胡红'与‘洛阳红'的相似性系数最低(0.71).牡丹基因型能改变AM真菌群落结构特征.     

Prey range characterization, ribotyping, and diversity of soil and rhizosphere Bdellovibrio spp. isolated on phytopathogenic bacteria

Thirty new Bdellovibrio strains were isolated from an agricultural soil and from the rhizosphere of plants grown in that soil. Using a combined molecular and culture-based approach, we found that the soil bdellovibrios included subpopulations of organisms that differed from rhizosphere bdellovibrios. Thirteen soil and seven common bean rhizosphere Bdellovibrio strains were isolated when Pseudomonas corrugata was used as prey; seven and two soil strains were isolated when Erwinia carotovora subsp. carotovora and Agrobacterium tumefaciens, respectively, were used as prey; and one tomato rhizosphere strain was isolated when A. tumefaciens was used as prey. In soil and in the rhizosphere, depending on the prey cells used, the concentrations of bdellovibrios were between 3 x 10(2) to 6 x 10(3) and 2.8 x 10(2) to 2.3 x 10(4) PFU g(-1). A prey range analysis of five soil and rhizosphere Bdellovibrio isolates performed with 22 substrate species, most of which were plant-pathogenic and plant growth-enhancing bacteria, revealed unique utilization patterns and differences between closely related prey cells. An approximately 830-bp fragment of the 16S rRNA genes of all of the Bdellovibrio strains used was obtained by PCR amplification by using a Bdellovibrio-specific primer combination. Soil and common bean rhizosphere strains produced two and one restriction patterns for this PCR product, respectively. The 16S rRNA genes of three soil isolates and three root-associated isolates were sequenced. One soil isolate belonged to the Bdellovibrio stolpii-Bdellovibrio starrii clade, while all of the other isolates clustered with Bdellovibrio bacteriovorus and formed two distantly related, heterogeneous groups.     

The growth-promoting effect of Beijerinckia and Clostridium sp. cultures on some agricultural crops

New strains of Beijerinckia mobilis and Clostridium sp. isolated from the pea rhizosphere were studied with respect to their promoting effect on the growth and development of some agricultural crops. Seed soaking in bacterial suspensions followed by the soil application of the suspensions or their application by means of foliar spraying was found to be the most efficient method of bacterization. The application of B. mobilis and Clostridium sp. cultures in combination with mineral fertilizers increased the crop production by 1.5-2.5 times. The study of the population dynamics of B. mobilis by the method of genetic marking showed that this bacterium quickly colonized the rhizoplane of plants and, therefore, had characteristics of an r-strategist. At the same time, Clostridium sp. was closer to K-strategists, since this bacterium slowly colonized the econiches studied. The introduction of the bacteria into soil did not affect the indigenous soil bacterial complex. The presence of Clostridium sp. slowed down the colonization of roots by the fungal mycelium. The possible mechanisms of the plant growth-promoting activity of B. mobilis and Clostridium sp. are discussed.     

Contribution of cytophaga-like bacteria to the potential of turnover of carbon,nitrogen, and phosphorus by bacteria in the rhizosphere of barley (Hordeum vulgare L.)

The functional potential of bacteria isolated from the rhizosphere of barley (Hordeum vulgare L.) in May, July, and August and cultivated on nutrient-rich substrate (1/10 TSBA) and nutrient-poor substrate (cold soil extract agar) was determined. There was no significant difference in numbers of CFU when counted on nutrient rich or poor substrate. Bacterial numbers increased approximately 3-fold in the rhizosphere soil from May to August but was unchanged in bulk soil over the same period. A total of 4474 randomly isolated bacteria were screened for enzymatic activities involved in carbon turnover (amylase, cellulase, mannanase, xylanase, and chitinase), nitrogen turnover (protease, nitrate and nitrite reductase), and phosphate turnover (phosphatase). In the rhizosphere soil, bacteria carrying C and P turnover enzymes were not stimulated by the growing plant whereas protease and nitrate and nitrite reductase were stimulated by the growing plant. No changes were observed in the bulk soil. Two taxonomic groups were followed: Cytophaga-like bacteria (CLB) and fluorescent pseudomonads, the latter being abundant in the rhizosphere and important contributors to the cycling of organic matter in soil. Unexpectedly in the spring samples, CLB were around 25% of all bacteria isolated, whereas fluorescent pseudomonads made up less than 10%. The relative proportion of these bacterial groups then decreased during the plant growth season but at all times showing a clear rhizosphere effect. Furthermore, up to 70% of the isolates carrying enzymes involved in the turnover of carbon, in the May sample, were identified as CLB, indicating the importance of this group in early colonization of the rhizosphere. The fluorescent pseudomonad group contributed less than 3%.     

Impact of biocontrol agents Pseudomonas fluorescens CHA0 and its genetically modified derivatives on the diversity of culturable fungi in the rhizosphere of mungbean

AIMS: To assess whether Pseudomonas fluorescens strain CHA0 and its genetically modified derivatives, CHA0/pME3424 (antibiotic over-producer) and CHA89 (antibiotic-deficient) could have an impact on the fungal community structure and composition in the rhizosphere of mungbean. METHODS AND RESULTS: Under glasshouse conditions, mungbean was grown repeatedly in the same soil, which was inoculated with CHA0, CHA0/pME3424, CHA89 or was left untreated. Treatments were applied to soil at the start of each 36-day mungbean growth cycle, and their effects on the diversity of the rhizosphere populations of culturable fungi were assessed at the end of the first, second and third cycles. The effects of CHA0 and CHA0/pME3424 did differ from the controls while CHA89 did not. Whereas all major fungal species were frequently isolated from both bacterized and nonbacterized rhizospheres, certain fungal species were exclusively promoted or specifically suppressed from Pseudomonas-treated soils. In general, fungal diversity and equitability tended to decrease with time while species richness slightly increased. Whilst a total of 29 fungal species were isolated from the mungbean rhizosphere, only eight species colonized the root tissues. CONCLUSIONS: Soil inoculation with Ps. fluorescens CHA0 or CHA0/pME3424 altered fungal community structure in mungbean rhizosphere but strain CHA89 failed to produce such effect. SIGNIFICANCE AND IMPACT OF THE STUDY: Pseudomonas fluorescens-mediated alteration in the composition and structure of fungal communities might have acute or lasting effects on ecosystem functioning. Furthermore, the study provides useful data pertinent to characterization of the fate of genetically modified inoculants (e.g. antibiotic-overproducing Pseudomonas strains) released into the environment.     

Detoxification of oxalic acid by pseudomonas fluorescens strain pfMDU2: implications for the biological control of rice sheath blight caused by Rhizoctonia solani

Rhizoctonia solani isolates varying in their virulence were tested for their ability to produce oxalic acid (OA) in vitro. The results indicated that the virulent isolates produced more OA than the less virulent isolates. In order to isolate OA-detoxifying strains of Pseudomonas fluorescens, rhizosphere soil of rice was drenched with 100 mM OA and fluorescent pseudomonads were isolated from the OA-amended soil by using King's medium B. These isolates were tested for their antagonistic effect towards growth of R. solani in vitro. Among them P. fluorescens PfMDU2 was the most effective in inhibiting the mycelial growth of R. solani. P. fluorescens PfMDU2 was capable of detoxifying OA and several proteins were detected in the culture filtrate of PfMDU2 when it was grown in medium containing OA. To investigate whether the gene(s) involved in OA-detoxification resides on the plasmids in P. fluorescens PfMDU2, a plasmid-deficient strain of P. fluorescens was generated by plasmid curing. The plasmid-deficient strain (PfMDU2P-) failed to grow in medium containing OA and did not inhibit the growth of R. solani. Both PfMDU2 and PfMDU2P- were tested for their efficacy in controlling sheath blight of rice under greenhouse conditions. Seed treatment followed by soil application of rice with P. fluorescens strain, PfMDU2, reduced the severity of sheath blight by 75% compared with the control, whereas PfMDU2P- failed to control sheath blight disease.     

Evaluation of a Native and Introduced Isolate of Pochonia chlamydosporia against Meloidogyne javanica

Growth chamber and plastic tunnel experiments were conducted to compare the ability of a native and introduced isolate of Pochonia chlamydosporia to colonize the rhizosphere of selected plant species and survive in soil. Effects of the isolates on population density of Meloidogyne javanica and yield of tomato after single or multiple fungal applications were also determined. In growth chamber experiments, both isolates showed a similar ability to colonise the rhizosphere of selected vegetables, except for the introduced isolate, which produced more colony forming units cm^-2 of root surface on tomato and cabbage than the native one. In the tunnel house, both isolates parasitized eggs of M. javanica, and the native but not the introduced isolate increased parasitism after multiple applications. The native isolate was recovered more frequently from soil, and was a better colonizer of tomato roots than the introduced one irrespective of the number of fungal applications. Multiple fungal applications of either isolate reduced the nematode gall rating, and the native isolate also reduced the final egg population in roots. Neither isolates reduced final nematode densities in soil or affected tomato yield when compared to untreated plots.     

Selective effects of five pesticides on soil and cotton-rhizosphere and-rhizoplane fungus flora

In two field sowings, the effect of five pesticides on soil, rhizosphere and rhizoplane fungi was tested. Ceresan and Orthocid (fungicides used as seed dressing) after 3 days were very toxic to the total count of soil fungi and to almost all fungal genera and species. After 40 days their toxicity was almost alleviated in the soil, but persisted in the rhizosphere. The herbicide VCS 438 did not significantly affect the total count of soil fungi but was initiative to the total rhizosphere fungi. Some fungal species were significantly promoted in the soil and rhizosphere and others were depressed. Dipterex (Insecticide) was promotive to the total count of soil fungi after 3 days and to some fungal species but this effect was almost alleviated after 40 days. In the rhizosphere, it exerted a promotive effect on the total count of fungi and on some fungal genera and species. Dursban (Insecticide) was of no significant effect on the total count of soil and rhizosphere fungi, but few species were significantly promoted.The rhizoplane fungi were the least sensitive, and none of the five pesticides induced a significant effect on the total count, but some species responded significantly, being either promoted or inhibited.     

Comparative analysis of cyanobacteria in the rhizosphere and as endosymbionts of cycads in drought-affected soils

Does the diversity of cyanobacteria in the cycad rhizosphere relate to the cyanobiont species found in the coralloid roots of these ancient plants? The aim of this study was to identify the diversity of soil cyanobacteria occurring in the immediate vicinity of 22 colonized coralloid roots belonging to members of the cycad genera: Macrozamia, Lepidozamia, Bowenia and Cycas. The majority of coralloid roots were sampled at depths >?10?cm below the soil surface. A total of 32 cyanobacterial isolates were cultured and their 16S rRNA gene partially sequenced. Phylogenetic analysis revealed nine operational taxonomic units of soil cyanobacteria comprising 30 Nostoc spp., a Tolypothrix sp. and a Leptolyngbya sp. Microscopy indicated that all isolates were unialgal and confirmed their genus identity. Rhizospheric diversity was compared to existing data on cyanobionts isolated at the same time from the cycad coralloid root. The same isolate was present in both the cycad coralloid root and rhizosphere at only six sites. Phylogenetic evidence indicates that most rhizosphere isolates were distinct from root cyanobionts. This weak relationship between the soil cyanobacteria and cycad cyanobionts might indicate that changes in the soil community composition are due to environmental factors.