Life cycle as a stable trait in the evaluation of diversity of Nostoc from biofilms in rivers

The diversity within the genus Nostoc is still controversial and more studies are needed to clarify its heterogeneity. Macroscopic species have been extensively studied and discussed; however, the microscopic forms of the genus, especially those from running waters, are poorly known and likely represented by many more species than currently described. Nostoc isolates from biofilms of two Spanish calcareous rivers were characterized comparing the morphology and life cycle in two culture media with different levels of nutrients and also comparing the 16S rRNA gene sequences. The results showed that trichome shape and cellular dimensions varied considerably depending on the culture media used, whereas the characteristics expressed in the course of the life cycle remained stable for each strain independent of the culture conditions. Molecular phylogenetic analysis confirmed the distinction between the studied strains established on morphological grounds. A balanced approach to the evaluation of diversity of Nostoc in the service of autecological studies requires both genotypic information and the evaluation of stable traits. The results of this study show that 16S rRNA gene sequence similarity serves as an important criterion for characterizing Nostoc strains and is consistent with stable attributes, such as the life cycle.     

Production of antibacterial activities by members of the family Pseudonocardiaceae: influence of nutrients

The production of antibacterial substances under different nutritive conditions has been studied in members of the Pseudonocardiaceae family. The results show that media with low nitrogen content stimulate the production of antibacterial substances in the genera Amycolatopsis, Saccharomonospora and Saccharopolyspora, while strains from the genus Pseudonocardia produce these metabolites in media with moderate or high nitrogen content.     

Hydrolytic and Fermentative Properties of Clostridium Species Isolated from Digesting Sludge

Fifty cultures belonging to the genus Clostridium were isolated from digesting sewage sludge and some of their hydrolytic and fermentative properties studied. The isolates could be divided into four loosely defined groups. Organisms belonging to the first group possessed little or no hydrolytic properties but produced acetic and iso -valeric acids in media containing minimal amounts of carbohydrate. The second (largest) group produced butyric acid in carbohydrate and non-carbohydrate media and were able to hydrolyse starch. The third group comprised non-hydrolytic strains which fermented carbohydrate to butyric acid; acetic, iso -butyric and iso -valeric acids were produced in media containing no additional carbohydrate. The final group, proteolytic organisms, produced very large quantities of several iso -acids in non-carbohydrate media. It is suggested that these organisms fulfil an important role in the ecosystem and that the properties described help to define that role.     

Carbon dioxide evolution by bacteria of the genus Enterobacter that utilize glucose and glycerin

The activity of decarboxylase from two bacterial species belonging to the genus Aerobacter was studied in media containing different carbon sources. It has been shown that A. aerogenes and A. cloacae, in model experiments with media containing glycerol, evolve 1.2-3.5 times less CO2 (42-107 micrograms) as compared with the medium containing glucose (143-149 micrograms). The activity of decarboxylase of the bacterium in media with the tested sources of carbon correlated with the rate of acetoin biosynthesis.     

Fatty acid composition of the lipids in fungi of the genus Aspergillus developing on mineral media with different carbon sources

This work was aimed at studying the effect of different carbon sources in the composition of mineral media on the growth of fungi belonging to the Aspergillus genus and on the fatty acid composition of their lipids. A chemically-defined medium with glucose was shown to be optimal for the growth of 18 Aspergillus strains and for the synthesis of lipids by them. The fatty acid composition of lipids was studied when the fungi grew in media with different carbon sources. The lipids were shown to contain saturated and unsaturated fatty acids with the prevalence of oleic, linoleic and linolenic acids.     

Microorganisms--degraders of polychlorinated biphenyls

Four strains belonging to the genus Bacillus, capable of degrading polychlorinated biphenyls (PCB), were isolated by screening the collection strains of soil bacteria, degrading a organochlorine pesticide, hexachlorocyclohexane (HCCH). A method for production of tritium-labeled PCB was developed. Consumption and degradation of PCB by the soil bacterial strains selected were studied using tritium-labeled PCB and GLC. It was demonstrated that PCB are degradable both in culture media and under in model soil samples.     

Microorganisms Degrading Polychlorinated Biphenyls

Four strains belonging to the genus Bacilluscapable of degrading polychlorinated biphenyls (PCBs) were isolated by screening collection strains of soil bacteria degrading an organochlorine pesticide, hexachlorocyclohexane (HCCH). A method for production of tritium-labeled PCBs was developed. Consumption and degradation of PCBs by the soil bacterial strains selected were studied using tritium-labeled PCBs and GLC. It was demonstrated that PCBs are degradable both in culture media and in model soil samples.     

Effect of ferric sulfate on activity of moderately thermophilic acidophilic iron-oxidizing microorganisms

The effect of high ferric sulfate concentrations on the organisms predominating in biohydrometallurgical processes (bacteria of genus Sulfobaсillus and archaea of the genus Acidiplasma) was studied. Ability of the studied strains to grow and oxidize ferrous iron in the media with 125 to 500 mM ferric sulfate was determined. High concentrations of ferric sulfate significantly inhibited the oxidative activity and growth of the studied microorganisms. Bacteria of the genus Sulfobaсillus were found to be incapable of active iron oxidation in the presence of ferric iron sulfate at concentrations exceeding 250 mM. Archaea of the genus Acidiplasma oxidized ferrous iron completely in the presence of 500 mM Fe³⁺. Microbial growth was suppressed by relatively low ferric sulfate concentrations. Almost no growth occurred at ferric sulfate concentrations exceeding 199 mM, while lysis of the cells of all studied strains was observed at higher Fe³⁺ concentrations. Archaea (genus Acidiplasma, family Ferroplasmaceae) were shown to be more tolerant to high ferric sulfate concentrations than bacteria of the genus Sulfobaсillus. The results obtained may be used for improvement of biohydrometallurgical technologies and are also important for the understanding of the patterns of formation of microbial communities carrying out the technological processes.     

Diversity in the Ammonia-Oxidizing Nitrifier Population of a Soil

Multiple genera of ammonia-oxidizing chemoautotrophic nitrifiers in a soil were detected, isolated, and studied by means of modified most-probable-number (MPN) techniques. The soil examined was a Waukegon silt loam treated with ammonium nitrate or sewage effluent. The genera Nitrosomonas and Nitrosospira were found to occur more commonly than the genus Nitrosolobus. Three different MPN media gave approximately the same overall ammonia oxidizer counts within statistical error after prolonged incubation but differed markedly in ratios of Nitrosomonas to Nitrosospira. Selectivity and counting efficiency of MPN media were studied by observing the growth response of representative pure cultures isolated from the soil. Selectivity was evident in each medium with respect to all strains tested, and the media differed greatly in incubation times required to obtain maximum counts.     

Morphological,cultural, and biodestructive peculiarities of <Emphasis Type="Italic">Chaetomium</Emphasis> species

Chaetomium is a fungus species that inhabits different cellulose substrates. Some species of this genus destroy books, textile, and wood. This genus is of particular interest due to its antagonistic and enzyme peculiarities. Studies on morphological and cultural features of Chaetomium species have both theoretical and practical output. Growth rates and development of C. globosum, C. funicola, C. elatum, and C. spirale were studied under different temperatures (17–20°C, 25°C, 27°C, 30°C, and 33–35°C) and carbon source media (glucose, saccharose, mannite, lactose, amylum, and cellulose). The optimal growth temperature was 25–27°C for all the studied species, while the temperature range of 33–35°C inhibited the colonies’ growth. Growth dynamics and colony shape and morphology, as well as development of overhead mycelium and ascocarps, varied greatly in different Chaetomium species in regard to the carbon source media. When comparing the destructive effect of four studied species and C. murorum on craft paper, the highest activity was registered for C. globosum, C. funicola, and C. elatum.     

Toxicity of Irradiated Media for Xenorhabdus spp

Bacterial isolates of the genus Xenorhabdus were shown to be extremely sensitive to photoproducts produced in a number of common media irradiated by fluorescent light. Two forms of toxic oxygen, hydrogen peroxide and superoxide radical, were produced in the media upon exposure to fluorescent light. The addition of pyruvate or catalase to the irradiated media eliminated the toxicity. The poor plating efficiencies previously reported for Xenorhabdus spp. are likely due to the uncontrolled exposure of media to ambient lighting.     

Degradation of bis(2-ethylhexyl)phthalate by microorganisms of water and sediments of the Selenga river and Baikal Lake under experimental conditions

Degradation of bis-(2-ethylhexyl)phthalate (BEHP) by microbial associations of water and bottom sediments of the Selenga River and Lake Baikal and by pure cultures of microbial species belonging to various taxa isolated from the sediments under discussion has been studied. It has been shown that intense biological degradation occurs in both water and sediments. The degrees of conversion in experimental closed systems on minimal media are 46 and 24%, respectively. The most active of the organisms studied is a Micromironospora actinomycete. It degraded BEHP by 36% of its initial concentration. Spore-forming bacteria and microorganisms of the genus Pseudomonas were less active (17-23% and 7-11%).     

Comparison of 16S rRNA sequencing with conventional and commercial phenotypic techniques for identification of enterococci from the marine environment

AIMS: To compare accuracy of genus and species level identification of presumptive enterococci isolates from the marine environment using conventional biochemical testing, four commercial identification systems and 16S rRNA sequence analysis. METHODS AND RESULTS: Ninety-seven environmental bacterial isolates identified as presumptive enterococci on mEI media were tested using conventional and Enterococcus genus screen biochemical tests, four commercial testing systems and 16S rRNA sequencing. Conventional and Enterococcus genus screen biochemical testing, 16S rRNA sequencing and two commercial test systems achieved an accuracy of > or = 94% for Enterococcus genus confirmation. Conventional biochemical testing and 16S rRNA sequencing achieved an accuracy of > or = 90% for species level identification. CONCLUSIONS: For confirmation of Enterococcus genus from mEI media, conventional or genus screen biochemical testing, 16S rRNA sequencing and the four commercial systems were correct 79-100% of the time. For speciation to an accuracy of 90% or better, either conventional biochemical testing or 16S rRNA sequencing is required. SIGNIFICANCE AND IMPACT OF THE STUDY: Accurate identification of presumptive environmental Enterococcus isolates to genus and species level is an integral part of laboratory quality assurance and further characterization of Enterococcus species from pollution incidents. This investigation determines the ability of six different methods to correctly identify environmental isolates.     

Variability of <Emphasis Type="Italic">Chroococcus</Emphasis> (Cyanobacteria) morphospecies with regard to phylogenetic relationships

Recent advances in the taxonomy of cyanobacteria due to the utilization of molecular methods (such as 16S rRNA analysis) require a comparison of genetically identified items with their morphological expression. Morphological variability of seven monoclonal populations of the planktonic coccoid genus Chroococcus Nägeli, isolated mostly from reservoirs, fishponds, and littoral substrata from localities in the Czech and Slovak Republics, were studied experimentally under various combinations of nutrient concentration, light intensity, temperature, and water movement. Two cultivation media (WH-WC and BG11) commonly used in algal collections were applied in a liquid state. Of these, the WH medium was found to be more convenient for planktonic forms. Impacts of combined temperature and light gradients, concentration of P–PO₄, and a stable versus shaken medium were found to stress different morphological modifications as a consequence of varied growth intensity and media convenience. Cell width was chosen as the parameter for testing changes in morphology; formation of mucilage and packets of cells were also taken into account. According to 16S rRNA gene analysis, the sequences of 10 strains (including seven studied in the experiments), which were assigned to the genus Chroococcus in the Culture Collection CCALA T?eboň (www.cas.ccala.cz) formed four distinct phylogenetic groups. While two of them showed no affiliation to the genus Chroococcus, two other groups proved the polyphyletic character of the genus. Apart from the group of typical species of the genus Chroococcus, a group of planktonic species could be distinguished, i.e., Chroococcus limneticus Lemmermann 1898 (Limnococcus), and was established as a new genus after recombination.     

Cell-bound and extracellular carboxylesterases from Streptomyces: hydrolytic and synthetic activities

AIM: The distribution of cell-bound and extracellular carboxylesterases was investigated among the genus Streptomyces using 420 strains. METHODS AND RESULTS: Primary screening was carried out on solid media using tributyrin, triolein and Tween 60 as current substrates. Eleven representative strains were selected and grown in submerged cultures for evaluating their cell-bound and extracellular hydrolytic activity independently on various naphthyl and aliphatic esters. The best lipolytic strain was lyophilized and used as dry mycelium for catalysing the synthesis of various aliphatic esters in heptane, with molar conversions ranging from 28 to 78% after 3 days. CONCLUSIONS: Carboxylesterase activities can easily be found among the Streptomyces, often being cell-bound and also employable for catalysing esterification in organic solvent. SIGNIFICANCE AND IMPACT OF THE STUDY: A wide screening among Streptomyces, a genus poorly studied for the production of carboxylesterases, has allowed the selection of several strains with interesting enzymatic activities to be used in commercially valuable biotransformation.     

Immunohistochemical demonstration of renin in the juxtaglomerular apparatus of three Bufo species

Summary The cellular localization of renin was examined in the kidneys of some amphibians of the genus Bufo by immunoperoxidase and immunofluorescence techniques with an antiserum to renin isolated from the submandibular gland of the mouse. Immunoreactivity could be demonstrated in the media cells of the afferent arterioles (juxtaglomerular cells) close to as well as at great distance from the glomeruli. Occasionally, media cells of larger arterial vessels were also stained. The immunohistochemical data seem to be in accordance with earlier results obtained with a modified silver impregnation technique (Movat's staining procedure) used for the visualization of juxtaglomerular cells in non-mammalian vertebrates. Mouse kidney tissue, studied for purposes of comparison, showed renin-immunoreactivity as described by earlier investigators, i.e., immunoreactive staining in the afferent arterioles near the glomeruli and in the proximal tubule cells.     

Iridoid patterns of genus Plantago L. and their systematic significance

The distribution of 14 iridoid glucosides in 14 Plantago L. species (44 samples corresponding to 18 taxa) was shown. P. tenuiflora and P. gentianoides were studied for iridoids for the first time. The iridoid patterns showed a good correlation with morphological and other chemical features of the representatives of genus Plantago. The studied species are grouped together according to the iridoid patterns: species containing mainly aucubin (P. major, P. cornuti, P. gentianoides); species containing aucubin and aucubin derivatives (P. subulata, P. media); species containing aucubin and catalpol (P. lanceolata, P. altissima, P. argentea, P. lagopus, P. atrata); species containing aucubin and plantarenaloside (P. afra, P. scabra).     

A chitinolytic actinomycete complex in black soil

A chitinolytic actinomycete complex in chernozem soil has a specific taxonomic composition, which differs from that of the actinomycete complex which is typically isolated on standard nutrient media containing sugars and organic acids as carbon sources. The actinomycete complex that was isolated by using nutrient media with chitin as the source of carbon and nitrogen was dominated by representatives of the genus Streptosporangium, and the actinomycete complex that was isolated by using nutrient media with sugars and organic acids as the carbon sources was dominated by representatives of the genus Streptomyces. The confirmation to the ability of actinomycetes to utilize chitin as a sole source of carbon and nitrogen came from the augmented length and biomass of the mycelium, the increased number and biomass of the actinomycete spores, the production of carbon dioxide, and the accumulation of NH4+ ions in the culture liquid of the actinomycetes that are grown in the nutrient media with chitin.     

Some supplementary attributes in the classification of chlorococcum species

Summary Seventeen species of the chlorophycean genus Chlorococcum have been studied comparatively in axenic culture with the purpose of exploring the value of certain supplementary attributes in facilitating identification. The algae were cultivated under standard conditions in defined media. Such attributes as colony characteristics, changes in color and cellular morphology with increasing age, inhibition in the light by organic compounds such as acetate, pyruvate and certain pentose sugars, and differential sensitivity to antibiotic agents were studied and found useful in distinguishing the species of the genus Chlorococcum.This paper is dedicated to Professor Dr. E. G. Pringsheim on the occasion of his 80th birthday.The writers acknowledge with gratitude the assistance of Professor R. E. Alston, Mrs. Mildred Austin, Henry Aldrich and T. C. Massey.     

Lipid fatty acid composition of fungi in the genus Aspergillus grown on media with various sources of nitrogen

The fatty acid composition of lipids synthesized by fungi belonging to the Aspergillus genus was studied during their growth on media containing different organic and inorganic nitrogen sources. On the average, the cultures were shown to accumulate from 7 to 30 g/L of biomass and to synthesize from 3 to 13% of lipids. The lipids were found to contain saturated and unsaturated fatty acids with the number of carbon atoms from 14 to 18. The fungi had a typical fatty acid composition of lipids which did not depend on the composition of the growth medium.