Vibrios in the Louisiana gulf coast environment

A polyphasic approach, using bacteriological, immunological, and molecular biological techniques was used to elucidate the distribution of pathogenicVibrio species in the Louisiana coastal environment. A variety ofVibrio species pathogenic for man, includingV. cholerae, V. parahaemolyticus, V. fluvialis, andV. vulnificus, were found to be ubiquitous in Louisiana.Vibrio species monitored were shown to fluctuate in response to environmental factors of temperature, salinity, and nutrient level, and to vary independently of fecal coliform counts. A comprehensive serological screening system, based on species specific H antigens, was developed to identify pathogenicVibrio sp. 1 step after primary isolation.Vibrio sp. were correctly identified with accuracies ranging from 93–100%, depending on the specific H antiserum. Over 2,500V. cholerae isolates were rapidly screened for production of cholera toxin by DNA hybridization of specific toxin gene probes to colonies inoculated on nitrocellulose filter paper. The toxin gene probes, together with O antigen analysis, revealed that enterotoxigenicV. cholerae 01 serovars were recovered only from sewage stations or human disease, whereas enterotoxigenicV. cholerae non 01 serovars were recovered from environmental samples in addition to clinical and sewage samples. The results of this study indicate that techniques of immunology and molecular biology are very valuable supplements to conventional bacteriological techniques in studying the epidemiology and ecology of pathogenicVibrio sp.     

Occurrence and distribution of bacterial indicators and pathogens in canal communities along the Texas coast.

Increased construction of residential canal communities along the southern coastline of the United States has led to a concern about their impact on water quality. Pollution of such dead-end canals is potentially hazardous because of their heavy usage for recreational activities. Coliforms, fecal coliforms, and salmonellae in the surface water and bottom sediments of six selected residential coastal canals were monitored over a period of 17 months. No statistically significant relationship was observed between the organism concentrations and temperature, pH, turbidity, and suspended solids content of water. An inverse relationship between the concentration of indicator organism and salinity of water was found, however, to occur at a 99.9% level of significance. All of the microorganisms studied were found to be present in greater numbers in sediments than in the overlying water, often by a factor of several logs. Heavy rainfall resulted in large increases in the number of organisms in both water and sediment samples. Our results indicate that bottom sediments in the shallow canal systems can act as reservoirs of enteric bacteria, which may be resuspended in response to various environmental factors and recreational activities.     

Occurrence and distribution of bacterial indicators and pathogens in canal communities along the Texas coast.

Increased construction of residential canal communities along the southern coastline of the United States has led to a concern about their impact on water quality. Pollution of such dead-end canals is potentially hazardous because of their heavy usage for recreational activities. Coliforms, fecal coliforms, and salmonellae in the surface water and bottom sediments of six selected residential coastal canals were monitored over a period of 17 months. No statistically significant relationship was observed between the organism concentrations and temperature, pH, turbidity, and suspended solids content of water. An inverse relationship between the concentration of indicator organism and salinity of water was found, however, to occur at a 99.9% level of significance. All of the microorganisms studied were found to be present in greater numbers in sediments than in the overlying water, often by a factor of several logs. Heavy rainfall resulted in large increases in the number of organisms in both water and sediment samples. Our results indicate that bottom sediments in the shallow canal systems can act as reservoirs of enteric bacteria, which may be resuspended in response to various environmental factors and recreational activities.     

Distribution of ultramicrobacteria in a gulf coast estuary and induction of ultramicrobacteria

The abundance of ultramicrobacteria (i.e., bacteria that pass through a 0.2m filter) in a subtropical Alabama estuary was determined during a 1-year period. Although phenotypic and molecular characterization indicated that the population of ultramicrobacteria was dominated byVibrio species, species ofListonella andPseudomonas were also abundant. Vibrios occurred with the greatest frequency in waters whose salinities were less than 14, and were the most abundant species of the total ultramicrobacterial population year-round, whilePseudomonas species were absent or considerably reduced during the winter months. The total number of ultramicrobacteria showed an inverse relationship to total heterotrophic bacteria as measured by colony-forming units (CFU)/ml and to water quality as measured by several parameters. Analysis by generic composition indicated that both salinity and temperature significantly affected the distribution of these organisms. Laboratory studies revealed that strains of vibrios under starvation in both static and continuous-flow microcosms could be induced to form cells that passed through 0.2 and/or 0.4m filters. Cells exposed to low nutrients became very small; some grew on both oligotrophic (5.5 mg carbon/liter) and eutrophic (5.5 g carbon/liter) media; and some few cells grew only on oligotrophic media. By passing selected vibrio strains on progressively diluted nutrient media, cells were also obtained that were small, that passed through 0.4m filters, and that could grow in oligotrophic media. These results suggest that ultramicrobacteria in estuaries (at least some portion of the population) may be nutrientstarved or low nutrient-induced forms of certain heterotrophic, eutrophic, autochthonous, estuarine bacteria.     

Duffy blood group genotypes among African-Brazilian communities of the Amazon region

Duffy blood group genotype was studied in 95 unrelated subjects from four African-Brazilian communities of the Amazon region: Trombetas, Pitimandeua, Curiaú, and Mazag?o Velho. Genotyping was performed using an allele-specific primer polymerase chain reaction technique for determining the three major alleles at FY blood group, and as expected, FY*O allele was the most common one, with frequencies ranging from 56.4% in Mazag?o Velho to 72.2% in Pitimandeua, whereas the FY*O/FY*O genotype was found with frequencies between 32.3% in Mazag?o Velho and 58.8% in Curiaú. Genotype and allele distributions in the four Amazonian communities are consistent with a predominantly African origin with some degree of local differentiation and admixture with people of Caucasian ancestry and/or Amerindians. These results reveal that the impact of the FY*O/FY*O genotype on the transmission and endemicity of the vivax malaria deserves to be investigated in full detail in an attempt to identify the contribution of host biological factors and explain the non-homogeneous prevalence of malaria in the region expressed by its different levels of exposure.     

Copepod communities in karstic mediterranean lakes along the eastern Adriatic coast

The copepod communities of karstic lakes along the eastern Adriatic coast were studied. Lakes were divided in several groups according to their morphology (deep, shallow, barrage and reservoirs), production (oligotrophic, mesotophic and eutrophic), and salinity of water: freshwater and brackish. Copidodiaptomus steueri, Eucyclops serrulatusand Macrocyclops albidus belong to the group that inhabited most of the lakes under the study, regardless of lake type. The shallow karstic lakes are usually inhabited by Thermocyclops dybowskii, T. oithonoides, Cyclops vicinus and Eudiaptomus padanus etruscus in freshwater biotopes, and Calanipedia aquaedulcis and Copidodiaptomus steueri in brackish biotopes. The last two species can also be found in deep karstic lakes with brackish water (Bacina lakes in the Neretva River delta). Species like Cyclops abyssorumcan be found in most deep freshwater lakes. Some Calanoida were recorded in only one lake, like Eudiaptomus transsylvanicusin the deep Lake Vrana on the island of Cres, or Eudiaptomus hadzici in the barrage Lake Visovac. Production of the lakes, expressed as copepod biomass, depends on lake trophy, and in some lakes also on hydrology and salinity. Most of the meso-eutrophic lakes in the study area had Calanoida dominating, while Cyclopoida dominated in some oligotrophic and eutrophic lakes as well.     

Foraging time allocation in relation to sex by the gulf coast fiddler crab (Uca panacea)

Summary Schoener (1971) proposed that the reproductive demands of animals should be important in shaping their foraging behavior because fitness is affected. He defined two forager types: energy maximizers (reproductive success depends on energetic intake) and time minimizers (reproductive success depends on time spent in activities other than foraging), and suggested that females most often illustrate the former and males the latter. We tested whether mating activities influence the foraging behavior of Uca panacea, and the predictions that females would be energy maximizers because of their reproductive strategy and that males would also be energy maximizers because of their courtship activity. Time allocated to foraging by 800 male and female fiddler crabs (at two sites) was quantified; no significant difference in foraging time was found between the sexes. Both male and female crabs allotted a large portion of their time to foraging because both sexes depend on stored energy during their reproductive bouts. Our results show that the particular forager type can be predicted based on reproductive demands, but a forager type can not always be assigned to a particular sex without consideration of all important ecological and physiological factors determining reproductive success.     

Benthic macroinvertebrate distributions in the riffle-pool communities of two east Texas streams

The benthic macroinvertebrate riffle-pool communities of two east Texas streams were sampled monthly for a period of one year. In contrast to previous studies in primarily upland areas, pools in Alazan Creek and Bernaldo Bayou contained significantly higher densities and biomass, as well as a significantly higher diversity and number of taxa. The majority of taxa collected could be characterized as pool adapted organisms, with the Diptera, Ephemeroptera, Coleoptera, and Odonata having greater numbers in pools. Perlesta, Baetis, and Cheumatopsyche were the only genera to have significant numbers in riffles at both sampling sites. A greater number of taxa were restricted to pools at both sampling locations, and although an unstable, sandy substrate was a factor in limiting colonization of riffles, riffles were not as productive as pools even in the presence of suitable substrate conditions. A cluster analysis based on similarity indices indicated that like habitats between streams were more similar to each other, than were adjacent riffle-pool complexes within streams.     

Pirellula and OM43 are among the dominant lineages identified in an Oregon coast diatom bloom

Although bacterioplankton and phytoplankton are generally perceived as closely linked in marine systems, specific interactions between discrete bacterioplankton and phytoplankton populations are largely unknown. However, measurements of bacterioplankton distributions during phytoplankton blooms may indicate specific microbial lineages that are responding to phytoplankton populations, and potentially controlling them by producing allelopathic compounds. Here we use a comprehensive molecular approach to identify, characterize and quantify bacterioplankton community responses to an Oregon coast diatom bloom. Total DAPI counts increased by nearly sevenfold in bloom samples, reaching 5.7 x 10(9) cells l(-1), and lineage-specific cell counts using fluorescence in situ hybridization (FISH) indicated that Bacteria accounted for approximately 89% of observed increases. Several dominant members of the bacterial community present outside the bloom (SAR11 and SAR86) did not contribute significantly to observed increases in bloom samples. Clone library and FISH data indicated that uncultured planctomycetes most closely related to Pirellula, and members of the OM43 clade of beta proteobacteria, reached 0.5 x 10(8) and 1.2 x 10(8) cells l(-1), respectively, and were among the dominant lineages in bloom samples.     

Diversity and dominance patterns in Amazon coast dune forest island tree communities

Aiming to better understand richness, dominance, diversity and community changes of coastal vegetation, we studied woody plant communities and soil parameters of equatorial dune forest islands. We investigated four sites isolated by mangroves (Buraco Beach, Bonifácio, Camarauaçu, Apeu-Salvador) and compared data to a paleodune forest with higher floristic and structural complexity (Salinas do Roque) for assessment of the regional species pool. We determined grain size distribution and organic matter content at Buraco Beach, Camarauaçu and Apeu-Salvador. Grain size distribution was similar among sites but upper soil layers at Camarauaçu showed low organic matter contents. We recorded trees and shrubs along several transect plots crossing forested dune ridges and surveyed areas outside of plots for additional species. Richness was lower at Camarauaçu (18 species vs. 25, 26 and 28 at Bonifácio, Apeu-Salvador and Buraco Beach, respectively). Fisher’s α ranged between 3.2 and 4.7, Pielou’s J’ between 0.70 and 0.80. Rényi profiles confirmed lower diversity for Camarauaçu, dominated by a small group of species with high importance values. Within-site beta diversity was lowest at Buraco Beach. Species were mainly wide-spread generalists. We found low richness compared to the Salinas do Roque reference site; null model tests indicated that the species pool of the dune sites was partly shaped by environmental filtering. We attribute differences in species composition and diversity/dominance patterns among the four dune sites to distance to the mainland and stochastic events with effects on non-standard long distance dispersal.     

浙江天童太白山不同群落植物构型比较

植物构型是植株构件在空间上的分配方式,反映了植物对环境的响应策略。通过对浙江天童太白山海拔差异很小的栲树(Castanopsis fargesii)、小叶青冈(Cyclobalanopsis gracilis)和云山青冈(Cyclobalanopsis sessilifolia)群落类型中所有植株的树高、树冠厚度、树冠面积、叶片聚集度、枝下高和距地45 cm基径等植物构型性状,以及树冠曝光指数、土壤含水率、空气温湿度、土壤p H值和风速6个环境因子的测定,分别分析乔灌木层植物构型性状及性状关系在3个群落间的变化规律。结果表明:(1)从栲树到小叶青冈至云山青冈群落,灌木层的树高、树冠厚度、枝下高和距地45 cm基径增加,叶片聚集度减小;乔木层的树高、树冠厚度、树冠面积、枝下高和距地45 cm基径均减小,叶片聚集度增大;(2)3个群落灌木层构型性状间显著相关(P0.001),而乔木层只在中低海拔群落存在相关性;(3)从栲树到小叶青冈至云山青冈群落,乔灌木层的冠层曝光指数显著增加(P0.05);(4)多元逐步回归表明,树冠曝光指数对灌木层构型性状变异的贡献最大,而风速、土壤含水率和p H值对乔木构型性状的变异起主导作用。综上得知,天童太白山乔灌木植物在不同群落间存在构型分异,植物对光资源的竞争是引起灌木构型在不同群落间变化的主要驱动因子,而对乔木植物,其构型变化更多受到风速和土壤含水量的影响。     

Plant diversity and dry-matter dynamics of peri-urban plant communities in an Indian dry tropical region

The emergence of variety of land-use changes due to continuous anthropogenic pressure in peri-urban areas may concomitantly result in modification of the structure of associated plant communities for their sustainable growth. In the present study, plant diversity, and above- and belowground biomass distribution among species were investigated to understand their dynamics across different season, soil, and site conditions in a dry tropical peri-urban region in India. From four study sites that covered contrasting land uses: abandoned brick kiln (ABK), grazing land (GL), Kali river bank (KRB), and agricultural land (AL), a total of 360 monoliths were randomly extracted in three seasons, and dry weights were estimated for aboveground and belowground parts of species individuals. Seasonal soil samples of the sites were analyzed for physico-chemical characteristics. Of the total 87 recorded species that were mainly annual weeds and ruderals, 77% were forbs and 23% grasses. The ranges of plant biomass recorded across all sites and seasons were: aboveground 228–738 g m⁻², belowground 83–288 g m⁻², and a total of 344–1,026 g m⁻². The dominance of species differed between above- and belowground; some species dominated only above- or belowground, and others dominated in both layers. Above- and belowground biomass of the sites, differential community-biomass allocation to above- and belowground parts and species dominants varied significantly with site and season. ABK and AL sites showed lower species diversity and soil nutrients compared to GL and KRB sites. Belowground biomass significantly declined with increasing soil organic C and total N, indicating altered dry matter allocation under resource-scarce habitat conditions. Higher diversity occurred at both low- and high-biomass sites, reflective of enhanced ability of these plant communities to exploit resources maximally in spatio-temporal pattern.     

亚高山草地土壤原生生物群落结构和多样性海拔分布格局

生物多样性分布格局与维持机制即群落构建机制,是群落生态学研究的热点领域。微生物生态学中的一个关键问题是量化确定性过程和随机过程对微生物群落构建的相对贡献。尽管原生生物是土壤微生物群落中重要的组成部分,在微生物食物链中扮演着关键角色,但与细菌和真菌相比,目前对原生生物群落构建机制知之甚少。运用Illumina Miseq高通量测序技术,分析了五台山亚高山草地生态系统（海拔2000-3061 m范围内）土壤原生生物群落组成和多样性维持机制。结果表明,四个海拔梯度的土壤共获得有效序列520673条,分属于8个超群、24个门、65个纲、125个目、222个科和350个属。门水平上,丝足虫门（Cercozoa）、褐藻门（Ochrophyta）、纤毛门（Ciliophora）和顶复门（Apicomplexa）为主要优势类群。LEfSe分析显示,17个生物标志物对海拔梯度非常敏感,不同海拔梯度富集了不同的原生生物种群。尽管海拔对土壤原生生物群落的α多样性没有显著影响,但非度量多维尺度分析（NMDS）和相似性分析（ANOSIM）结果表明,原生生物群落组成和结构在海拔梯度上存在显著的差异（P<0.05）。冗余分析（RDA）显示海拔、土壤含水量、总氮和植物丰富度指数与原生生物群落结构存在显著相关性（P<0.05）。方差分解分析（VPA）和偏Mantel分析表明环境因子和空间变量对原生生物群落海拔分布格局均有显著影响,但是环境因子的相对作用（7.9%）明显大于空间变量（1.8%）。土壤原生生物群落之间的Bray-Curtis距离与海拔距离呈显著正相关关系（P<0.05）,说明选择过程可能是亚高山草地土壤原生生物群落分布格局的主要驱动因素。零模型分析进一步证实了确定性过程在原生生物群落构建中的相对作用大于随机过程。总之,五台山亚高山草地土壤原生生物群落组成和结构沿海拔梯度具有显著的变化格局,群落构建主要由确定性过程和随机过程驱动,但确定性过程占主导地位。     

Effects of prescribed fire on the composition of woody plant communities in southeastern Texas

Abstract. The response to prescribed burning of plant communities ranging from dry to wet habitats was monitored using permanent plots sampled from 1989 to 1993. Temporal controls for fire effects were provided by matched sets of plots protected from fire by newly constructed fire breaks. Changes in species composition were studied by ordination of strata of trees (> 5 cm DBH), small trees (2–5 cm DBH), large saplings (1–2 cm DBH), and small saplings and seedlings (50–140 cm tall). Results show that changes occurred largely in the small tree stratum, in which xeric species increased in importance. Although there were changes in sapling and seedling strata, no clear direction of change was recognized. Fire had little effect on the tree stratum. Of the seven community types under study, three types, sandhill, upland pine, and upperslope pine-oak, were most strongly affected, as indicated by post-fire change in positions of samples representing these communities in ordination space and reduction in understory species abundance. Samples representing the other four mesic and wet communities showed little or no change in their positions. These short-term results indicate that changes in vegetation resulting from fire were small and were mostly restricted to the dry types in which possible compositional change is expected to occur. This differential effect of fire suggests that the influence of fire is secondary to that of topographical and soil gradients in determining vegetation pattern under current fire regimes. Fire seems to reinforce an overall vegetation gradient controlled by soil in southeastern Texas.     

Diversity and phenology of weed communities in the Nile Delta region

This study evaluates the species diversity and phe-nological behaviour of the weed communities associated with the common crops in the Nile Delta region (three winter crops: Egyptian clover, broad beans and wheat; and three summer crops: cotton, maize and rice). The weed communities of winter crops are of higher diversity than those of summer crops, presumably due to differences in sowing and weeding processes. The phenological sequences of the weed communities are, in most cases, closely related to those of the crops in which they occur. The correspondence between the crucial periods in the life cycle of the weed and the crop (seedling establishment and fruiting) often leads to severe competition.     

Salinity stratified benthic macrofaunal communities and long-term monitoring along the west coast of Sweden

Benthic macrofauna was quantitatively sampled in 12 coastal areas along the west coast of Sweden in 1971–1976. The Baltic Current creates a halocline at ≈15m depth which acts as a barrier between two differently structured benthic communities, one of which has a wide extension along the coast below the halocline and the other above the halocline. Physical and chemical factors, e.g., variations in salinity and temperature, have a great influence on the faunal structure above the halocline, whereas biological processes are the main determinating factors of the faunal composition in the comparatively more stable environment below the halocline. The sub-halocline community contains significantly more species (60%), a significantly higher mean abundance (4200 compared with 2000 ind. m^?2) and a significantly greater mean biomass (146 compared with 71 g m^?2 wet wt) than that above the halocline. Diversity measured by the Shannon-Wiener formula and its evenness had approximately the same means in both these habitats, 3.3–3.7 and 0.62, respectively.Four of the areas investigated in 1976 were also studied in the 1920's by approximately the same methods. The number of species, abundance, and biomass were significantly greater in the recent samples than in those taken half a century ago. and the community structures differed between the two periods. These differences are attributed to seasonal and natural long-term changes and different methods in processing the samples obtained. It is concluded that the halocline is a habitat divider and creates a vertical discontinuity for benthic communities on the west coast of Sweden.     

Fungal endophyte communities in four Rhizophoraceae mangrove species on the south coast of China

This study investigated the taxonomic identities and diversity of fungal endophytes isolated from four Rhizophoraceae mangrove plant species, Ceriops tagal, Rhizophora apiculata, R. stylosa and Bruguiera sexangula var. rhynchopetala, using a combination of morphological and molecular approaches. Two hundred ninety-five isolates were classified into 38 taxa by morphological characteristics. The representative 38 isolates from each taxa were selected for further molecular identification using nuclear ribosomal DNA sequences, including both the internal transcribed spacers (ITS1 and ITS2) and the 5.8S gene region. The 38 representative endophytes were identified to various taxonomic levels. These results suggest that Pestalotiopsis and Phomopsis were the most frequent endophytes in the four host species. Some of the endophytes exhibit host and tissue specificity. The colonization frequencies of endophytic fungi in the stems of the four host plants are evidently higher than in the roots. The four Rhizophoraceae mangrove species have low similarities of endophyte communities.