Pyricularia grisea and Bipolaris oryzae: a preliminary study on the occurrence of airborne spores in a rice field

Qualitative and quantitative analysis of fungalair spores in a rice field located around Pavia(North Italy) were made from 10th June to7th October 1996. Quantitative data wereanalyzed for the two rice pathogensPyricularia grisea (Cooke) Sacc. andBipolaris oryzae Shoem., causal organisms ofblast and brown spot. Results showed thatB. oryzae was detected at the end of June,reaching its peak in July. Brown spot symptomsin-field were detected six-seven days after theaforementioned peak. Pyricularia griseawas monitored later than Bipolaris as itwas detected for the first time on July21st, reaching its peaks on July 27thand August 6–7th. Field evaluation of thedisease showed the presence of blast startingfrom the first week of July.The knowledge of the atmospheric concentrationof Pyricularia and Bipolarisairborne spores together with a correctexamination of the crops can yield informationabout the risk of infection during thevegetative season, thus allowing for a moreaccurate use of fungicides on rice crops,according to the modern conception ofintegrated control.     

RAPD Marker Linked to a Gene Conferring Resistance to Race IB-9 of Pyricularia grisea in a Somaclone of the Rice Cultivar Araguaia

The gene Pi-ar confers resistance to Pyricularia grisea in a somaclone of the upland rice cultivar Araguaia developed from callus culture of immature panicles. The somaclone SC09 exhibited resistant reaction to all of the 182 P. grisea test isolates belonging to 15 different races. The study on inheritance showed that the resistance to pathotype IB-9 of P. grisea is monogenic and dominant. In order to identify marker linked to this gene, the F₂ population from a cross between the highly susceptible cultivar Lijiangxintuanheigu (LTH) and the somaclone SC09 of rice cultivar Araguaia was screened using RAPD primers. Initially, the polymorphism between parents, the cultivar LTH and somaclone SC09 was analyzed using 577 random 10-bp primers. The susceptible and resistant bulks of the F₂ population, along with DNA of the two parents were tested with 176 primers that differentiated susceptible and resistant parents. Thirty-six primers differentiated the susceptible and resistant bulks, as well as the cultivar LTH of the somaclone SC09. However, one primer OPK17 was found to be closely linked (5.3 cM) to the resistance gene of somaclone and this can be used in the marker assisted selection.     

Participation of Oryza sativa leaf wax in appressorium formation by Pyricularia oryzae

Appressorium formation of Pyricularia oryzae P2 on cover-glass coated with each of the components of rice leaf wax was examined. Wax esters, aldehydes and alcohols, having polar groups and low contact angles, promoted appressorium formation, but alkanes, non-polar molecules having high contact angles, had no effects. Germination of conidia, however, was not aftected with those constituents.     

Genetic Analysis of Resistance to Rice Blast: A Study on the Inheritance of Resistance to the Blast Disease Pathogen in an F3 Population of Rice

Blast caused by the fungus Magnaporthae grisea (Herbert) Borr. (anamorphe Pyricularia oryza Cav.) is a serious disease of rice (Oryza sativa L.). One method to overcome this disease is to develop disease resistant cultivars. Due to the genetic plasticity in the pathogen genome, there is a continuous threat to the effectiveness of the developed cultivars. Additional studies of the genetics of resistance, virulence stability and functional genomics are required to accelerate research into understanding the molecular basis of blast disease resistance. In this study, individual plants of the F₃ population derived from Pongsu Seribu 2 and Mahsuri were used for pathogenesis assays and inheritance studies of blast resistance. The study was performed with two of the most virulent Malaysian M. grisea pathotypes: P7.2 and P5.0. For blast screening, plants were scored based on the IRRI Standard Evaluation System (SES). F₃ populations showed a segregation ratio of 3R:1S for pathotype P7.2, indicating that resistance to this pathotype is likely controlled by a single nuclear gene. Chi‐square analysis showed that the F₃ families segregated in a 15R:1S ratio for pathotype P5.0. Therefore, locus interactions or epitasis of blast resistance occur against pathotype P5.0 in the F₃ population derived from Pongsu Seribu 2 and Mahsuri. This can be explained by the presence of two independent dominant genes that when present simultaneously, provide resistance to the M. gresia pathotype P5.0. These results indicated that blast resistance in rice is due to the combined effects of multiple loci with major and minor effects. The genetic data generated here will be useful in the breeding of local cultivars for resistance to field blast. The methodology reported here will facilitate the mapping of genes and quantitative trait loci (QTLs) underlying the blast resistance trait.     

稻瘟病菌株的DNA指纹分析及小种鉴别

基于对稻瘟病菌(Pyricularia oryzae)基因文库的分析,我们找到了一套含重复顺序的克隆。其中POR6和POR7被证实具有高度的多态性并随机散布于稻瘟病菌生理小种的致病性时,可以获得可分辨的基因组特异的杂交带型。我们还分析了致病性与8个稻瘟病菌株DNA指纹图谱之间的关系,结果表明各个小种组合间的百分相似率S_xy,值与该小种组合间共同侵染的鉴别品种数目有正相关性。     

稻瘟病菌群体遗传结构的研究进展

稻梨孢引起的稻瘟病是世界水稻生产的最重要病害,严重影响水稻的产量和米质。文中综述了分子标记技术在稻瘟病菌群体遗传结构研究上的应用,分析了病原菌遗传宗谱的特点及其与致病谱的关系,探讨了导致稻瘟病菌群体遗传结构发生变化的相关因素。     

Genetic Structure of Pyricularia grisea (Cooke) Sacc. Isolates from Italian Paddy Fields

Rice blast disease, caused by the fungus Pyricularia grisea (Cooke) Sacc., is responsible for considerable damages in rice crops in Italy and in other parts of the world. This study was conducted in order to investigate the genetic structure of a P. grisea population in the Po area, the largest rice area in Italy. Rice leaves showing blast symptoms were collected in three successive years (1998–2000) and 43 P. grisea monoconidial culture samples were isolated from infected rice leaves. Fungal DNAs were obtained from mycelia. Moreover, six additional P. grisea DNA samples representative for the five characterized European lineages were also investigated. All 49 DNAs were fingerprinted using the Pot2‐based repetitive polymerase chain reaction specific for the blast pathogen. Unweighted pair‐group method with arithmetic averages cluster analysis shows the presence of three main Italian lineages. Within lineages, similarity was higher than 80%. Samples representative of the three of five known European lineages grouped within these three Italian lineages confirming the presence of three European lineages in Italy. Furthermore, cluster analysis shows the presence of two new haplotypes never found before in the Italian lineage.     

Pathotype and Genetic Diversity amongst Indian Isolates of Xanthomonas oryzae pv. oryzae

A number of rice resistance genes, called Xa genes, have been identified that confer resistance against various strains of Xanthomonas oryzae pv. oryzae (Xoo), the causal agent of bacterial blight. An understanding of pathotype diversity within the target pathogen population is required for identifying the Xa genes that are to be deployed for development of resistant rice cultivars. Among 1024 isolates of Xoo collected from 20 different states of India, 11 major pathotypes were distinguished based on their reaction towards ten Xa genes (Xa1, Xa3, Xa4, xa5, Xa7, xa8, Xa10, Xa11, xa13, Xa21). Isolates belonging to pathotype III showing incompatible interaction towards xa8, xa13 and Xa21 and compatible interaction towards the rest of Xa genes formed the most frequent (41%) and widely distributed pathotype. The vast majority of the assayed Xoo isolates were incompatible with one or more Xa genes. Exceptionally, the isolates of pathotype XI were virulent on all Xa genes, but have restricted distribution. Considering the individual R-genes, Xa21 appeared as the most broadly effective, conferring resistance against 88 % of the isolates, followed in decreasing order by xa13 (84 %), xa8 (64 %), xa5 (30 %), Xa7 (17 %) and Xa4 (14 %). Fifty isolates representing all the eleven pathotypes were analyzed by southern hybridization to determine their genetic relatedness using the IS1112 repeat element of Xoo. Isolates belonging to pathotype XI were the most divergent. The results suggest that one RFLP haplotype that is widely distributed all over India and is represented in strains from five different pathotypes might be an ancestral haplotype. A rice line with xa5, xa13 and Xa21 resistance genes is resistant to all strains, including those belonging to pathotype XI. This three gene combination appears to be the most suitable Xa gene combination to be deployed in Indian rice cultivars.     

Comparative Analysis of Pathogenicity and Phylogenetic Relationship in Magnaporthe grisea Species Complex

Outbreaks of rice blast have been a threat to the global production of rice. Members of the Magnaporthe grisea species complex cause blast disease on a wide range of gramineous hosts, including cultivated rice and other grass species. Recently, based on phylogenetic analyses and mating tests, isolates from crabgrass were separated from the species complex and named M. grisea. Then other isolates from grasses including rice were named as M. oryzae. Here, we collected 103 isolates from 11 different species of grasses in Korea and analyzed their phylogenetic relationships and pathogenicity. Phylogenetic analyses of multilocus sequences and DNA fingerprinting revealed that the haplotypes of most isolates were associated with their hosts. However, six isolates had different haplotypes from the expectation, suggesting potential host shift in nature. Results of pathogenicity tests demonstrated that 42 isolates from crabgrass and 19 isolates from rice and other grasses showed cross-infectivity on rice and crabgrass, respectively. Interestingly, we also found that the isolates from rice had a distinct deletion in the calmodulin that can be used as a probe.     

Tenuazonic acid,toxin of rice blast fungus,induces disease resistance and reactive oxygen production in plants

Effects of tenuazonic acid (TA) on rice leaf segments and on their interaction with compatible races of the blast fungus (Magnaporthe grisea, former name is Pyricularia oryzae) were studied. TA induced small brown necrotic spots on leaves Application of TA (1 or 5 mM) to leaves in mixtures with M. grisea spores induced a local disease resistance, which reduced the frequency of compatible lesions. TA was not fungitoxic but, in contact with the leaf, increased the capability of leaf diffusates to inhibit germination of M. grisea spores. In the infected leaves, the diffusate fungitoxicity was higher than in the healthy ones. Antioxidant enzymes, superoxide dismutase and catalase, and scavengers of hydroxyl radical, mannitol and formate, strongly inhibited the TA-induced diffusate fungitoxicity. It is suggested that the disease resistance induced by TA is mediated, at least partially, by generation of reactive oxygen species by rice leaves, which inhibit the development of the fungus directly or indirectly.     

Current Research on the Major Nematode Problems in Japan

Among important nematode species occurring in Japan, current research achievements with the following four nematodes are reviewed: 1) Soybean cyst nematode (SCN), Heterodera glycines - breeding for resistance, race determination, association with Cephalosporium gregatum in azuki bean disease, and isolation of hatching stimulant. 2) Potato-cyst nematode (PCN), Globodera rostochiensis - pathotype determination (Ro 1), breeding for resistance, and control recommendations. 3) Pinewood nematode (PWN), Bursaphelenchus xylophilus - primary pathogen in pine wilt disease, life cycle exhibiting a typical symbiosis with Japanese pine sawyer, Monochamus alternatus, and project for control. 4) Rice root nematodes (RRN), Hirschmanniella imamuri and H. oryzae - distribution of species, population levels in roots, and role of these nematodes in rice culture.     

The Role of Toxin(s) Produced by Germinating Spores of Pyricularia oryzae in Pathogenesis

Pyricularia oryzae produced toxin(s) during spore germination which induced susceptibility to infection by non-pathogenic Alternaria alternata of rice leaves. The induced susceptibility was independent of the compatibility between the races of blast fungi used for obtaining the toxin(s) and the rice cultivars used for bioassay. Susceptibility was also induced in other susceptible species (e.g. barley, Italian ryegrass, perennial ryegrass and wheat), results suggesting that the toxin(s) are host-selective and determine the host specificity at plant species level.     

The Role of Toxin(s) Produced by Germinating Spores of Pyricularia oryzae in Pathogenesis

Pyricularia oryzae produced toxin(s) during spore germination which induced susceptibility to infection by non-pathogenic Alternaria alternata of rice leaves. The induced susceptibility was independent of the compatibility between the races of blast fungi used for obtaining the toxin(s) and the rice cultivars used for bioassay. Susceptibility was also induced in other susceptible species (e.g. barley, Italian ryegrass, perennial ryegrass and wheat), results suggesting that the toxin(s), are host-selective and determine the host specificity at plant species level.     

Role of Energy in Pathogenic Variability of Pyricularia oryzae

Pyricularia oryzae Cav. reacts differently to different varieties. IB race group attacked Zenith for three consecutive years for both rabi and kharif seasons under artificial inoculation condition. Three different isolates were obtained in IB race which differed in their pathogenicity giving a constant susceptible reaction to Zenith. The difference in energy potential of three isolates of P. oryzae was tested biochemically. Total sugar, protein and protein patterns were studied following modern methods. W isolate contained maximum amount of total sugar (18.3 μg/g), total protein (23.8 μg/g albumin equivalent) and seven distinct protein bands on polyacrylamide disc electrophoretic gel which was directly correlated with maximum infection value. So it was concluded that the aggressiveness of P. oryzae depends on its energy potentiality in terms of total protein and protein patterns.     

Suppression of XopQ–XopX‐induced immune responses of rice by the type III effector XopG

Effectors that suppress effector‐triggered immunity (ETI) are an essential part of the arms race in the co‐evolution of bacterial pathogens and their host plants. Xanthomonas oryzae pv. oryzae uses multiple type III secretion system (T3SS) secreted effectors such as XopU, XopV, XopP, XopG, and AvrBs2 to suppress rice immune responses that are induced by the interaction of two other effectors, XopQ and XopX. Here we show that each of these five suppressors can interact individually with both XopQ and XopX. One of the suppressors, XopG, is a predicted metallopeptidase that appears to have been introduced into X. oryzae pv. oryzae by horizontal gene transfer. XopQ and XopX interact with each other in the nucleus while interaction with XopG sequesters them in the cytoplasm. The XopG E76A and XopG E85A mutants are defective in interaction with XopQ and XopX, and are also defective in suppression of XopQ–XopX‐mediated immune responses. Both mutations individually affect the virulence‐promoting ability of XopG. These results indicate that XopG is important for X. oryzae pv. oryzae virulence and provide insights into the mechanisms by which this protein suppresses ETI in rice.     

In vitro selection of resistant rice plants against rice blast caused by Pyricularia oryzae via tissue culture technique

Abstract

A step by step protocol for resistant calli selection via a tissue culture technique under stress of Pyricularia oryzae culture filtrates was followed. Rice embryos dissected apart from the endosperm of susceptible rice seeds (Giza 176 and Riho) to P. oryzae produced embryonic calli on media containing various growth regulators of 2,4-D at concentrations of 0, 1, 1.5 and 2 mg/L and/or benzyl amino purine (BAP) at 0, 0.5, 1 and 1.5 mg/L when incubated under complete dark conditions for three weeks. Embryonic explants only produced shoots on media containing BAP. Selection of resistant calli was carried out in vitro under the challenging stress of increasing concentration of the pathogen P. oryzae culture filtrate (CF) from “0” up to 100%. The selection protocol has two directions. The first is step-by-step selection from lower to higher selective (CF) concentrations. The second is the exchangeable continuous cycles with and without the same selective (CF) concentration until the end of the selection regime to avoid calli adaptation to (CF). The regenerated calli to plantlets occurred under (CF) stress showed resistance and susceptibility when exposed to the pathogen infection under greenhouse conditions. The results reveal that the resistance in regenerated rice plantlets to P. oryzae pathogen segregated as 1 resistant: 2 moderate resistant: 1 susceptible giving the predication that the resistance in rice to P. oryzae may be controlled by one pair of genes. The in vitro selective regime via tissue cultures is advisable for the selection of novel disease resistant plants because of its time saving, space, money, it is easily applied and has a bio-safe approach.     

Evidence for Biotrophic Lifestyle and Biocontrol Potential of Dark Septate Endophyte Harpophora oryzae to Rice Blast Disease

The mutualism pattern of the dark septate endophyte (DSE) Harpophora oryzae in rice roots and its biocontrol potential in rice blast disease caused by Magnaporthe oryzae were investigated. Fluorescent protein-expressing H. oryzae was used to monitor the colonization pattern. Hyphae invaded from the epidermis to the inner cortex, but not into the root stele. Fungal colonization increased with root tissue maturation, showing no colonization in the meristematic zone, slight colonization in the elongation zone, and heavy colonization in the differentiation zone. H. oryzae adopted a biotrophic lifestyle in roots accompanied by programmed cell death. Real-time PCR facilitated the accurate quantification of fungal growth and the respective plant response. The biocontrol potential of H. oryzae was visualized by inoculation with eGFP-tagged M. oryzae in rice. H. oryzae protected rice from M. oryzae root invasion by the accumulation of H₂O₂ and elevated antioxidative capacity. H. oryzae also induced systemic resistance against rice blast. This systemic resistance was mediated by the OsWRKY45-dependent salicylic acid (SA) signaling pathway, as indicated by the strongly upregulated expression of OsWRKY45. The colonization pattern of H. oryzae was consistent with the typical characteristics of DSEs. H. oryzae enhanced local resistance by reactive oxygen species (ROS) and high antioxidative level and induced OsWRKY45-dependent SA-mediated systemic resistance against rice blast.     

Screening siderophore producing bacteria as potential biological control agent for fungal rice pathogens in Thailand

Rice (Oryza sativa) is a staple food in Thailand and, in addition, feeds around one half of the world’s population. Therefore, diseases of rice are of special concern. Rice is destroyed by 2 main pathogens, Fusarium oxysporum and Pyricularia oryzae the causative agents of root rot and blast in rice respectively. These pathogens result in low grain yield in Thailand and other Southeast Asian countries. Soil samples were taken from paddy fields in Northern Thailand and bacteria were isolated using the soil dilution plate method on Nutrient agar. Isolation yielded 216 bacterial isolates which were subsequently tested for their siderophore production and effectiveness in inhibiting mycelial growth in vitro of the rice pathogenic fungi; Alternaria sp., Fusarium oxysporum, Pyricularia oryzae and Sclerotium sp., the causal agent of leaf spot, root rot, blast and stem rot in rice. It was found that 23% of the bacteria isolated produced siderophore on solid plating medium and liquid medium, In dual culture technique, the siderophore producing rhizobacteria showed a strong antagonistic effect against the Alternaria (35.4%), Fusarium oxysporum (37.5%), Pyricularia oryzae (31.2%) and Sclerotium sp. (10.4%) strains tested. Streptomyces sp. strain A 130 and Pseudomonas sp. strain MW 2.6 in particular showed a significant higher antagonistic effect against Alternaria sp. while Ochrobactrum anthropi D 5.2 exhibited a good antagonistic effect against F. oxysporum. Bacillus firmus D 4.1 inhibited P. oryzae and Kocuria rhizophila 4(2.1.1) strongly inhibited Sclerotium sp. P. aureofaciens AR 1 was the best siderophore producer overall and secreted hydroxamate type siderophore. This strain exhibits an in vitro antagonistic effect against Alternaria sp., F. oxysporum and P. oryzae. Siderophore production in this isolate was maximal after 15 days and at an optimal temperature of 30°C, yielding 99.96 ± 0.46 μg ml^?1 of siderophore. The most effective isolates were identified by biochemical tests and molecular techniques as members of the Genus Bacillus, Pseudomonas and Kocuria including B. firmus D 4.1, P. aureofaciens AR1 and Kocuria rhizophila 4(2.1.1). The study demonstrated antagonistic activity towards the target pathogens discussed and are thus potential agents for biocontrol of soil borne diseases of rice in Thailand and other countries.     

Evaluation of Rice Cultivars under Greenhouse Conditions for Adult-Plant Resistance to Pyricularia oryzae

Six rice cultivars showing various types of resistance or susceptibility to Pyricularia oryzae in the field were compared under controlled environmental conditions. The resistance of the cultivars with adult-plant resistance was race-specificat early growth stage. On all cultivars tested, blast infection became increasingly reduced on either leaves of adult plants or older leaves, as observed in rice plants of different leaf stages infected with different individual races. Their increase inhost resistance was marked by an apparent transition in infection type and reduced blast severity depending on leaf age and developmental stage of plants. The ranking of disease severity of the adult-plantresistant cultivars to different races was constant during plant development, whereas that of the susceptible cultivars was differential. It is suggested that different degrees of resistance in rice cultivars may exist in seedlings and be consistently maintained during plant development, probably becoming more distinct as rice plants mature.     

Phytotoxins from Pyricularia grisea and Their Effect on Finger Millet

Pyricularia grisea, the fungus that causes blast disease in finger millet [Eleusine coracana (L) Gaertn] produced maximum quantity of crude toxins. Crude toxins were partially purified and characterized by UV and mass spectra. Pyrichalasin H, a phytotoxic metabolite, has been identified and found to be toxic when tested for inhibition of seed germination and seedling growth of blast resistant and susceptible finger millet varieties.