Shifts in Climate Foster Exceptional Opportunities for Species Radiation: The Case of South African Geraniums

Climate change is often assumed to be a major driver of biodiversity loss. However, it can also set the stage for novel diversification in lineages with the evolutionary ability to colonize new environments. Here we tested if the extraordinary evolutionary success of the genus Pelargonium was related to the ability of its species to capitalize on the climate niche variation produced by the historical changes in southern Africa. We evaluated the relationship between rates of climate niche evolution and diversification rates in the main Pelargonium lineages and disentangled the roles of deep and recent historical events in the modification of species niches. Pelargonium clades exhibiting higher ecological differentiation along summer precipitation (SPP) gradients also experienced higher diversification rates. Faster rates of niche differentiation in spatially structured variables, along with lower levels of niche overlap among closely related species, suggest recent modification in species niches (e.g. dispersal or range shift) and niche lability. We suggest that highly structured SPP gradients established during the aridification process within southern Africa, in concert with niche lability and low niche overlap, contributed to species divergence. These factors are likely to be responsible for the extensive diversification of other lineages in this diversity hot spot.     

Geographic distribution and phenetic skull variation in two close species of Graomys (Rodentia, Cricetidae, Sigmodontinae)

The interspecific differentiation of South American rodents of the genus Graomys was assayed at ecological and morphometric levels in two species. At the ecological level, niche modelling was used. At the morphometric level, the hypothesis that the size and shape of the skull vary with the geographic location was tested using geometric morphometrics by assessing the extent and spatial distribution of phenotypic skull variation within and among two species, Graomys griseoflavus and Graomys chacoensis. Our results of niche modelling indicate the spatial differentiation between the two species, with G. chacoensis inhabiting preferably the Chaco ecoregion and G. griseoflavus inhabiting mainly the Monte ecoregion. In multiple linear regressions, approximately 20% of the skull size variation is explained by latitude, altitude, and temperature seasonality. The partial least square analysis reveals strong correlation between shape and environmental variables, mainly with latitude, annual mean temperature, and annual precipitation. Discrimination between G. griseoflavus and G. chacoensis was highly reliable when using geometric morphometric tools. These results permit us to elucidate some evolutionary processes that have occurred in these species.     

Global ecological niche conservatism and evolution in Olea species

Background and AimsClimate is an important parameter in delimiting coarse-grained aspects of fundamental ecological niches of species; evolution of these niches has been considered a key component in biological diversification. We assessed phylogenetic niche conservatism and evolution in 24 species of the family Oleaceae in relation to temperature and precipitation variables. We studied niches of 17 Olea species and 7 species from other genera of Oleaceae globally.MethodsWe used nuclear ribosomal and plastid DNA to reconstruct an evolutionary tree for the family. We used an approach designed specifically to incorporate uncertainty and incomplete knowledge of species’ ecological niche limits. We performed parsimony- and likelihood-based reconstructions of ancestral states on two independent phylogenetic hypotheses for the family. After detailed analysis, species’ niches were classified into warm and cold niches, wet and dry niches, and broad and narrow niches.Key ResultsGiven that full estimates of fundamental niches are difficult, we explore the alternative approach of explicit incorporation of knowledge of gaps in the information available, which allows avoidance of overestimation of amounts of evolutionary change. The result is a first synthetic view of evolutionary dynamics of ecological niches and distributional potential in a widespread plant family. Temperate regions of the Earth were occupied only by lineages that could derive with cold and dry niches; Southeast Asia held species with warm and wet niches; and parts of Africa held only species with dry niches.ConclusionsHigh temperature in Lutetian (Oligocene) and low temperature in Rupelian (Eocene) with major desertification events play important role for niche retraction and expansion in the history for Oleaceae clades. Associations between environmental niche characteristics and phylogeny reconstruction play an important role in understanding ecological niche conservatism, the overall picture was relatively slow or conservative niche evolution in this group.     

Speciation along a latitudinal gradient: The origin of the Neotropical cycad sister pair Dioon sonorense–D. vovidesii (Zamiaceae)

Latitude is correlated with environmental components that determine the distribution of biodiversity. In combination with geographic factors, latitude‐associated environmental variables are expected to influence speciation, but empirical evidence on how those factors interplay is scarce. We evaluated the genetic and environmental variation among populations in the pair of sister species Dioon sonorense–D. vovidesii, two cycads distributed along a latitudinal environmental gradient in northwestern Mexico, to reveal their demographic histories and the environmental factors involved in their divergence. Using genome‐wide loci data, we determined the species delimitation, estimated the gene flow, and compared multiple demographic scenarios of divergence. Also, we estimated the variation of climatic variables among populations and used ecological niche models to test niche overlap between species. The effect of geographic and environmental variables on the genetic variation among populations was evaluated using linear models. Our results suggest the existence of a widespread ancestral population that split into the two species ~829 ky ago. The geographic delimitation along the environmental gradient occurs in the absence of major geographic barriers, near the 28th parallel north, where a zonation of environmental seasonality exists. The northern species, D. vovidesii, occurs in more seasonal environments but retains the same niche of the southern species, D. sonorense. The genetic variation throughout populations cannot be solely explained by stochastic processes; the latitudinal‐associated seasonality has been an additive factor that strengthened the species divergence. This study represents an example of how speciation can be achieved by the effect of the latitude‐associated factors on the genetic divergence among populations.     

Shape and evolution of the fundamental niche in marine Vibrio

Hutchinson''s fundamental niche, defined by the physical and biological environments in which an organism can thrive in the absence of inter-species interactions, is an important theoretical concept in ecology. However, little is known about the overlap between the fundamental niche and the set of conditions species inhabit in nature, and about natural variation in fundamental niche shape and its change as species adapt to their environment. Here, we develop a custom-made dual gradient apparatus to map a cross-section of the fundamental niche for several marine bacterial species within the genus Vibrio based on their temperature and salinity tolerance, and compare tolerance limits to the environment where these species commonly occur. We interpret these niche shapes in light of a conceptual model comprising five basic niche shapes. We find that the fundamental niche encompasses a much wider set of conditions than those strains typically inhabit, especially for salinity. Moreover, though the conditions that strains typically inhabit agree well with the strains'' temperature tolerance, they are negatively correlated with the strains'' salinity tolerance. Such relationships can arise when the physiological response to different stressors is coupled, and we present evidence for such a coupling between temperature and salinity tolerance. Finally, comparison with well-documented ecological range in V. vulnificus suggests that biotic interactions limit the occurrence of this species at low-temperature—high-salinity conditions. Our findings highlight the complex interplay between the ecological, physiological and evolutionary determinants of niche morphology, and caution against making inferences based on a single ecological factor.     

基于青冈和滇青冈生态位模拟的湿润和半湿润常绿阔叶林替代分布及气候解释

为揭示湿润常绿阔叶林和半湿润常绿阔叶林替代分布的气候制约变量,该研究选择其代表性优势树种青冈(Cyclobalanopsis glauca)和滇青冈(C.glaucoides)为研究对象,收集两个物种的标本分布点数据和19个生物气候变量图层数据,运用MaxEnt模型,模拟其潜在分布区,通过判别分析(DFA)、方差分析(...     

Effect of competition on habitat utilization in two temperate climate gecko species

Competition over spatial niche utilisation is one of most common competitive interactions between species in sympatry. Moreover, competitive interactions may involve age classes, and can fluctuate temporally. Consequently, evasive strategies that enable co-existence are likely to be important in the evolution of species assemblages. Here we investigate a system of two co-existing species of temperate geckos with similar ecologies (the house gecko, Hemidactylus turcicus and the wall gecko, Tarentola mauritanica), providing an opportunity to study the effect of species interactions. Juveniles and adults of both species were investigated throughout their daily and annual cycle to explore the effect of inter- and intra-specific interactions on microhabitat use. The two species showed differences in habitat use for both age classes in sympatry. In sympatry, T. mauritanica uses more open habitats and is more active. In contrast, H. turcicus is found in more closed habitats, closer to the ground and to vegetation cover. In allopatry, H. turcicus was observed in more open habitats, closer to the ground, and to vegetation cover, when compared to the population in sympatry with T. mauritanica. These differences in habitat usage were significant for both age classes. Moreover, there were differences, both in sympatry and in allopatry, between age classes that were dependent on season. In conclusion, the presence of a competitor induces a spatial shift in individuals of both age classes of H. turcicus. Observed plasticity in habitat utilisation in both age classes of H. turcicus is used to argue for the invasive potential of this species.     

Protein expression parallels thermal tolerance and ecologic changes in the diversification of a diving beetle species complex

Physiological changes associated with evolutionary and ecological processes such as diversification, range expansion or speciation are still incompletely understood, especially for non-model species. Here we study differences in protein expression in response to temperature in a western Mediterranean diving beetle species complex, using two-dimensional differential gel electrophoresis with one Moroccan and one Iberian population each of Agabus ramblae and Agabus brunneus. We identified proteins with significant expression differences after thermal treatments comparing them with a reference EST library generated from one of the species of the complex (A. ramblae). The colonisation during the Middle Pleistocene of the Iberian peninsula by A. ramblae, where maximum temperatures and seasonality are lower than in the ancestral north African range, was associated with changes in the response to 27 °C in proteins related to energy metabolism. The subsequent speciation of A. brunneus from within populations of Iberian A. ramblae was associated with changes in the expression of several stress-related proteins (mostly chaperons) when exposed to 4 °C. These changes are in agreement with the known tolerance to lower temperatures of A. brunneus, which occupies a larger geographical area with a wider range of climatic conditions. In both cases, protein expression changes paralleled the evolution of thermal tolerance and the climatic conditions experienced by the species. However, although the colonisation of the Iberian peninsula did not result in morphological change, the speciation process of A. brunneus within Iberia involved genetic isolation and substantial differences in male genitalia and body size and shape.     

Temperature niche conservatism and strong genetic structure are involved in the trans-Panamanian colonization of Matudaea (Hamamelidaceae) to Andean forests

Matudaea is the only genus of the Hamamelidaceae found in South America. The genus is composed by two extant species, M. trinervia, from Mexico and Costa Rica, and Matudaea colombiana, from the Colombian Andes; additional fossil records are present in Central Europe. Population genetics, molecular phylogenetics and niche modelling approaches were applied to explain processes related with the trans-Panamanian M. trinervia/M. colombiana split and the putative colonization of the latter to the northern Andes. The split between the two Matudaea species was estimated during Middle Miocene. The colonization of Matudaea into South America could have been facilitated by the closure of the Isthmus of Panama and the global decreasing of temperature during Miocene. Five haplotypes of M. colombiana were identified, which show an eastwards decline of genetic diversity and suggest a founder effect in the colonization of Eastern cordillera of the Colombian Andes. We detected a niche conservatism signal between the two Matudaea species related with Temperature of Coldest Month and Mean Temperature of Driest Quarter bioclimatic variables; this signal might be related to the narrow altitudinal range occupied by the two species.     

Landscape-scale positive feedbacks between fire and expansion of the large tussock grass, Ampelodesmos mauritanica in Catalan shrublands

In the northern Mediterranean Basin, agricultural land abandonment over the last century has resulted in increasing frequencies of very large, intense fires. In Catalonia (NE Spain) some fires have been locally associated with the expansion of the large, evergreen, resprouting tussock grass Ampelodesmos mauritanica. We tested the hypothesis of a positive feedback between the abundance of A. mauritanica and changing fire regimes. We used permanent plots distributed across a natural gradient of density of A. mauritanica in the Garraf Natural Park near Barcelona. Total aboveground biomass nearly doubled from plots with low to high density through a combination of A. mauritanica replacing the biomass of other components of the community (predominantly native shrubs), and its absolute standing biomass increasing. The quantity of litter also increased. This increase in fuel load and changes in community functional composition resulted from the simultaneous decrease in shrub productivity and an increase in litter accumulation. Litter accumulation was the consequence of A. mauritanica litter decomposing 30% more slowly than that of shrubs. Under standardized conditions, A. mauritanica and its litter were considerably more flammable than any of the shrub species. This resulted in a more than 40‐fold increase in calculated plot flammability from low‐to‐high‐density plots. Feedbacks, at the landscape scale, were then analysed using the landscape simulation platform LAMOS. Invasion success and contribution to community biomass of A. mauritanica increased with decreasing fire return intervals. Total area burnt in the landscape during each fire year was positively and exponentially related to the total biomass of A. mauritanica. Simulations showed that landscapes can abruptly switch from regimes of small localized to extensive fires as a result of the spread of A. mauritanica. Therefore, increases in fires under climate change represent threats not only through their direct impacts on ecosystems, but also by promoting invaders such as A. mauritanica, which have the potential to induce powerful feedforward processes and, thereby, fundamental changes to ecosystems.     

The species chromatogram,a new graphical method to represent,characterize, and compare the ecological niches of different species

The ecological niche sensu Hutchinson is defined as the set of environmental conditions allowing a species to grow, maintain, and reproduce. This conception of the niche, which is assimilated to a p‐dimensional hypervolume, with p representing all environmental variables, has been widely applied in ecology. However, displaying the niche hypervolume has proved challenging when more than three environmental dimensions are considered simultaneously. We propose a simple method (implemented in the specieschrom R package) that displays the full multidimensionality of the ecological niche of a species into a two‐dimensional space by means of a graphic we call species chromatogram. This method gives a graphical summary of the niche by representing together abundance gradients with respect to all environmental variables. A chromatogram enables niche optimums and breaths to be rapidly quantified, and when several chromatograms are examined (one per species), rapid comparisons can be made. From our chromatograms, we proposed a procedure that quantifies niche optimum and breadth as well as niche overlapping (index D) and the identification of the most discriminant combination of environmental variables. We apply these analyses on eight planktonic species collected by the Continuous Plankton Recorder (CPR) survey in the North Atlantic Ocean using 10 environmental variables. We display their full multidimensional niches and quantify their niche optimums and breadths along each dimension. We also compare our index D with other indices by means of hypervolume and dynRB R packages. By catching the full complexity of the niche, species chromatograms allow many different niche properties to be rapidly assessed and compared among species from niche optimums and breadths to the identification of the most relevant environmental parameters and the degree of niche overlapping among species. Species chromatograms may be seen as species’ fingerprint and may also allow a better identification of the mechanisms involved in species assembly.     

Geographic distribution of phlebotomine sandfly species (Diptera: Psychodidae) in Central-West Brazil

This study updates the geographic distributions of phlebotomine species in Central-West Brazil and analyses the climatic factors associated with their occurrence. The data were obtained from the entomology services of the state departments of health in Central-West Brazil, scientific collections and a literature review of articles from 1962-2014. Ecological niche models were produced for sandfly species with more than 20 occurrences using the Maxent algorithm and eight climate variables. In all, 2,803 phlebotomine records for 127 species were analysed. Nyssomyia whitmani, Evandromyia lenti and Lutzomyia longipalpis were the species with the greatest number of records and were present in all the biomes in Central-West Brazil. The models, which were produced for 34 species, indicated that the Cerrado areas in the central and western regions of Central-West Brazil were climatically more suitable to sandflies. The variables with the greatest influence on the models were the temperature in the coldest months and the temperature seasonality. The results show that phlebotomine species in Central-West Brazil have different geographical distribution patterns and that climate conditions in essentially the entire region favour the occurrence of at least one Leishmania vector species, highlighting the need to maintain or intensify vector control and surveillance strategies.     

From descriptive to predictive distribution models: a working example with Iberian amphibians and reptiles

Background

The two sympatric species of Tunisian desert ants, Cataglyphis bicolor and C. mauritanica, do not exhibit any differences in their foraging ecology, e.g. in food preferences and in their spatial and temporal activity patterns. Here we show that instead the two species markedly differ in their life histories.

Results

We analysed mtDNA of specimens that were collected along a 250-km transect. C. bicolor exhibited a genetically unstructured population (with the genetic and geographic distances among colonies not being correlated). On the contrary the populations of the polygynous C. mauritanica were clearly structured, i.e. exhibited a strong correlation between genetic and geographic distances. This difference is in accordance with large queen dispersal distances due to far-reaching mating flights in C. bicolor and small queen dispersal distances due to colony foundation by budding in C. mauritanica. Furthermore, wherever we found populations of both species to coexist within the same habitat, the habitat was used agriculturally. Mapping nest positions over periods of several years showed that plowing dramatically decreased the nest densities of either species.

Conclusion

We conclude that owing to its greater queen dispersal potential C. bicolor might be more successful in quickly re-colonizing disturbed areas, while the slowly dispersing C. mauritanica could later out-compete C. bicolor by adopting its effective nest-budding strategy. According to this scenario the observed sympatry of the two species might be an intermediate stage in which faster colonization by one species and more powerful exploitation of space by the other species have somehow balanced each other out. In conclusion, C. bicolor and C. mauritanica represent an example where environmental disturbances in combination with different life histories might beget sympatry in congeneric species with overlapping niches.     

Intraspecific variation in epiphyte functional traits reveals limited effects of microclimate on community assembly in temperate deciduous oak canopies

Forest canopies are heterogeneous environments where changes in microclimate over short distances create an opportunity for niche‐based filtering of canopy‐dwelling species assemblages. This environmental filtering may not occur if species' physiological capacities are flexible or if rapid dispersal alleviates compositional differences. I assess the role of humidity, light and temperature gradients in structuring epiphyte communities in temperate deciduous oak (Quercus) canopies and determine whether gradients filter species with fixed traits or whether environmental constraints act primarily to alter individual phenotypes. I measured environmental conditions and seven functional traits related to water and light acquisition on individual macrolichens at 60 sample locations in northern red oaks Quercus rubra in two Piedmont forests in North Carolina, USA. The effects of environmental variables on individual‐level traits and community composition were evaluated using linear mixed models and constrained ordination (RDA). In general, traits and community composition responded weakly to environmental variables and trait variation within taxa was high. Cortex thickness exhibited the strongest response, such that individuals with thicker cortices were found in samples experiencing lower humidity and higher light levels. Overall, gradients of humidity, light and temperature were not strong environmental filters that caused large changes in community composition. This was probably due to phenotypic variability within taxa that enabled species to persist across the full range of environmental conditions measured. Thus, humidity affected the phenotype of individuals, but did not limit species distributions or alter community composition at the scale of branches within trees. Community and trait responses were primarily associated with site‐level differences in humidity, suggesting that in these forests landscape‐scale climatic gradients may be stronger drivers of epiphyte community assembly than intra‐canopy environmental gradients.     

Taxonomic observations on some species of the genusParietaria

Taxonomy and distribution ofParietaria serbica.Pan?,P. lusitanica L.,P. micrantha Lebed. andP. mauritanica Dur. is briefly discussed.P. serbica is an endemic species of SE. Europe and is related toP. judaica Strand in L.P. lusitanica is divided into two subspecies.P. micrantha is treated as a variety ofP. lustitanica subsp.chersonensis (Lang) Chratek.P. mauritanica is reported as a new species for Sicily.     

Climatic niche divergence explains angiosperm diversification across clades in China

Diversification rates are critically important for understanding patterns of species richness among clades. However, the effects of climatic niche width on plant diversification rates remain to be elucidated. Based on the phylogenetic, climatic, and distributional information of angiosperms in China, a total of 26 906 species from 182 families were included in this study. We aimed to test relationships between diversification rate and climatic niche width and climatic niche width related variables (including climatic niche divergence, climatic niche position, geographic extent, and climatic niche evolutionary rate) using phylogenetic methods. We found that climatic niche divergence had the largest unique contribution to the diversification rate, while the unique effects of climatic niche width, climatic niche position, geographic extent, and climatic niche evolutionary rate on the diversification rate were negligible. We also observed that the relationship between diversification rate and climatic niche divergence was significantly stronger than the null assumption (artefactual relationship between diversification and clade-level climatic niche width by sampling more species). Our study supports the hypothesis that wider family climatic niche widths explain faster diversification rates through a higher climatic niche divergence rather than through higher geographic extent, higher climatic niche evolutionary rate, or separated climatic niche position. Hence, the results provide a potential explanation for large-scale diversity patterns within families of plants.     

Environmental effects on growth phenology of co-occurring Eucalyptus species

Growth is one of the most important phenological cycles in a plant’s life. Higher growth rates increase the competitive ability, survival and recruitment and can provide a measure of a plant’s adaptive capacity to climate variability and change. This study identified the growth relationship of six Eucalyptus species to variations in temperature, soil moisture availability, photoperiod length and air humidity over 12 months. The six species represent two naturally co-occurring groups of three species each representing warm-dry and the cool-moist sclerophyll forests, respectively. Warm-dry eucalypts were found to be more tolerant of higher temperatures and lower air humidity than the cool-moist eucalypts. Within groups, species-specific responses were detected with Eucalyptus microcarpa having the widest phenological niche of the warm-dry species, exhibiting greater resistance to high temperature and lower air humidity. Temperature dependent photoperiodic responses were exhibited by all the species except Eucalyptus tricarpa and Eucalyptus sieberi, which were able to maintain growth as photoperiod shortened but temperature requirements were fulfilled. Eucalyptus obliqua exhibited a flexible growth rate and tolerance to moisture limitation which enables it to maintain its growth rate as water availability changes. The wider temperature niche exhibited by E. sieberi compared with E. obliqua and Eucalyptus radiata may improve its competitive ability over these species where winters are warm and moisture does not limit growth. With climate change expected to result in warmer and drier conditions in south-east Australia, the findings of this study suggest all cool-moist species will likely suffer negative effects on growth while the warm-dry species may still maintain current growth rates. Our findings highlight that climate driven shifts in growth phenology will likely occur as climate changes and this may facilitate changes in tree communities by altering inter-specific competition.     

Exploring the main factors influencing habitat preference of Popillia japonica in an area of recent introduction

The possibility of establishment of an invasive species in an area of new introduction is influenced by several factors, including weather conditions, soil characteristics, and species spread dynamics. Disentangling the role of multiple variables on habitat preference can provide important elements supporting the management of invasive species. In this work, we present a modelling framework that allows i) the identification of the main drivers influencing the probability of the presence of the invasive pest Japanese beetle Popillia japonica, in an area of recent introduction in Northern Italy, and ii) the evaluation of bi-dimensional niches to investigate the non-linear combined effects of couples of variables on the potential distribution of this species. Occurrence records of larval populations sampled between 2017 and 2019 in 8488 sites in Northern Italy were used in the present study. The sample sites were characterised based on a set of explanatory variables related to land use, soil characteristics, meteorological conditions, and infestation history. We performed a stepwise logistic regression analysis for testing the statistical significance of explanatory variables on the occurrence of local larval populations. Then, we implemented a Generalized Additive Model to investigate the bi-dimensional ecological niche determined by the interaction of two variables on the probability of the presence of P. japonica. The results highlight the prominent role of soil and weather variables and the infestation history of the species in driving the presence of P. japonica larvae. Less acidic soils, especially with sandy-skeletal particles, are preferred. A high density of P. japonica larvae is associated with medium content of soil organic carbon in the soil. Long drought periods or high precipitation levels reduce the probability of the presence of the species. Non-linear effects are observed between soil temperature variables and habitat preferences of P. japonica. The probability of the presence of P. japonica is also related to the number of years since the first occurrence of the species at the site. The results of the present work provide fundamental elements for guiding the assessment of the risk and the management of P. japonica.     

Environmental Correlates of Body Mass in True Lemurs (<Emphasis Type="Italic">Eulemur</Emphasis> spp.)

An organism’s body size is intrinsically related to its metabolic requirements, life history profile, and ecological niche. Previous work in primates generally, and lemurs specifically, has shown that body size often correlates with ecological parameters related to temperature and energy availability in the environment, although other studies indicate the absence of any such patterns in lemurs. Here we test hypotheses that predict that body mass in Eulemur should covary with 1) overall food availability or resource seasonality and/or 2) temperature, i.e., Bergmann’s rule. We use data from 722 wild true lemurs to identify population-specific body mass for 27 populations representing 11 of the 12 described Eulemur species, and derive climatic data for each population from the WorldClim database. We use phylogenetic generalized least squares models to evaluate these hypotheses and find that body mass significantly negatively correlates with annual mean temperature and positively correlates with standard deviation of temperature, but does not significantly correlate with annual rainfall or number of dry months. These results indicate that body mass distribution across populations in Eulemur is consistent with Bergmann’s rule, but does not track resource seasonality as seen in other lemurs, e.g., Propithecus. We suggest that the fact that body mass in various lemur radiations correlates with different environmental variables may result in these patterns being obscured when such taxa are combined in a single analysis. This may help explain why some previous work has found little evidence of ecogeographical correlates with body mass across all Lemuriformes.