The genetics of scrapie in sheep and goats

Scrapie, an invariably fatal disease of sheep and goats, is a transmissible spongiform encephalopathy (TSE). The putative infectious agent is the host-encoded prion protein, PrP. The development of scrapie is closely linked to polymorphisms in the host PrP gene. The pathogenesis of most TSEs involves conversion of normal, cellular PrP into a protease-resistant, pathogenic isoform called PrPSc. The conversion to PrPSc involves change in secondary structure; it is impacts on these structural changes that may link polymorphisms to disease. Within the structured C-terminal part of PrP polymorphisms have been reported at 15 and 10 codons of the sheep and goat PrP genes respectively. Three polymorphisms in sheep are acutely linked to the occurrence of scrapie: A136V, R154H and Q171R/H. These generate five commonly observed alleles: ARQ, ARR, AHQ, ARH and VRQ. ARR and AHQ are associated with resistance; ARQ, ARH and VRQ are associated with susceptibility. There are subtle effects of specific allele pairings (genotypes). Generally, more susceptible genotypes have younger ages at death from scrapie. Different strains of scrapie occur which may attack genotypes differently. Different sheep breeds vary in the assortment of the five alleles that they predominantly encode. The reason for this variation is not known. Furthermore, certain genotypes may be susceptible to scrapie in some breeds and resistant in others. The explanation is not known, but may relate to different scrapie strains circulating in different breeds, or there may be effects of other genes which modulate the effect of PrP.     

Comparison of RBG-banded karyotypes of cattle, sheep, and goats

The karyotypes of the three main domestic Bovidae species. Bos taurus, Ovis aries, and Capra hircus, have been investigated by RBG-banding. Primary fibroblast cells were cultured from fetal lung or muscle tissue and collected for chromosome preparation after double thymidine synchronization. Depending on the culture and species, BrdU and FdU were added for 8-11 h or 7-10 h, respectively, before harvest. The chromosomes of the three species were classified and numbered according to standard conventions (ISCNDA, 1989) and compared at different stages of condensation. Within the resolving power of the images obtained, the RBG-banding patterns appear to be very similar, with only minor differences existing between chromosome 9 and the sex chromosomes of cattle and the same chromosomes in the domestic sheep and the goat.     

Antral follicle growth and endocrine changes in prepubertal cattle,sheep and goats

In the growing heifer calve, there is an early post-natal, gonadotrophin driven increase in ovarian antral follicle growth. The endocrine regulation of and reason for this initial stimulation of ovarian follicular development are not fully understood. This initial endocrine activity appears to be later held in check by negative feedback suppression mechanisms until the heifer is of a sufficient body size to initiate oestrous cycles and to reproduce. There is increasing evidence from recent ultrasonographic studies, performed in the same groups of prepubertal heifer calves, that the development of ovarian antral follicles and tubular genitalia occur in parallel. There appear to be two distinct periods of enhanced development of the reproductive organs, from 2 to 14 weeks of age and again from 34 to 60 weeks of age, or just prior to puberty. First ovulation in heifers is preceded by a gradual increase in pulsed LH secretion, which results in enhanced antral follicle development and oestrogen production. It was demonstrated that prepubertal heifers produced recurrent antral follicular waves; maximum sizes and life span of the dominant follicles of waves, as well as periodicity and FSH dependency of wave emergence were similar to those in adult cattle. In does, no Graafian follicles are seen at birth and total follicle numbers increase to 2 months of age, and then decline to 5 months of age. In ewe lambs, studies using transrectal ovarian ultrasonography showed that antral follicle recruitment and growth increased after the first 2 months of age and just before puberty. This bi-phasic pattern of changes in ovarian follicle recruitment and growth is strikingly similar to that in heifer calves, but it contrasts with earlier post-mortem examinations of ovaries in ewe lambs. Unlike in cattle and adult ewes, the rhythmic pattern of follicular wave emergence was not established in pre- and peripubertal ewe lambs. The early increase in antral follicle numbers and size in ewe lambs may be, at least in part, due to changes in FSH release and potency, and enhanced follicle production prior to first ovulation is probably caused by an increase in the frequency of LH pulses.     

Nutritional requirements of sheep,goats and cattle in warm climates: a meta-analysis

The objective of the study was to update energy and protein requirements of growing sheep, goats and cattle in warm areas through a meta-analysis study of 590 publications. Requirements were expressed on metabolic live weight (MLW=LW^0.75) and LW¹ basis. The maintenance requirements for energy were 542.64 and 631.26 kJ ME/kg LW^0.75 for small ruminants and cattle, respectively, and the difference was significant (P<0.01). The corresponding requirement for 1 g gain was 24.3 kJ ME without any significant effect of species. Relative to LW^0.75, there was no difference among genotypes intra-species in terms of ME requirement for maintenance and gain. However, small ruminants of warm and tropical climate appeared to have higher ME requirements for maintenance relative to live weight (LW) compared with temperate climate ones and cattle. Maintenance requirements for protein were estimated via two approaches. For these two methods, the data in which retained nitrogen (RN) was used cover the same range of variability of observations. The regression of digestible CP intake (DCPI, g/kg LW^0.75) against RN (g/kg LW^0.75) indicated that DCP requirements are significantly higher in sheep (3.36 g/kg LW^0.75) than in goats (2.38 g/kg LW^0.75), with cattle intermediate (2.81 g/kg LW^0.75), without any significant difference in the quantity of DCPI/g retained CP (RCP) (40.43). Regressing metabolisable protein (MP) or minimal digestible protein in the intestine (PDI_min) against RCP showed that there was no difference between species and genotypes, neither for the intercept (maintenance=3.51 g/kg LW^0.75 for sheep and goat v. 4.35 for cattle) nor for the slope (growth=0.60 g MP/g RCP). The regression of DCP against ADG showed that DCP requirements did not differ among species or genotypes. These new feeding standards are derived from a wider range of nutritional conditions compared with existing feeding standards as they are based on a larger database. The standards seem to be more appropriate for ruminants in warm and tropical climates around the world.     

The significance of water absorption and fibre digestion in the omasum of sheep, goats and cattle

1. The omasal dry matter contents constituted 0.6, 1.2 and 3.3% of the body weight in the sheep, goats and cows, respectively. 2. A large part of the fluid leaving the reticulo-rumen passed quickly through or along the omasum to the abomasum in sheep (43%). The proportion was much less in goats (17%). 3. The absorption of water from the fluid delayed in the omasum was low: 15, 18 and 19% in sheep, goats and cows, respectively. 4. Little or no acid detergent fibre was degraded in the omasum.     

Conservation of nucleolus organizer regions during evolution in sheep, goat, cattle and aoudad.

There are ten nucleolus organizer regions (NORs) in domestic sheep (Ovis aries L.). cattle (Bos taurus L.), goat (Capra hircus L.) and aoudad (Ammotragus lervia Blyth) and these are located terminally on chromosomes with homologous (G-banding patterns. The similarity in number of nucleolus organizer regions in these species may indicate that their ribosomal DNA regions are infrequently involved in exchange events which could lead to different numbers of active nucleolus organizer regions. Other possible explanations of the conservation of number of nucleolus organizer regions in these species are discussed. The homology of NOR location in these species supports the idea that the Bovidae karyotype tends to be fairly stable apart from changes due to centric fusion events.     

Seroprevalence of Toxoplasma gondii in pigs, sheep, goats, and cattle from Grenada and Carriacou, West Indies

Prevalence of Toxoplasma gondii infection in pregnant women in Grenada is considered high. Little is known of the epidemiology of T. gondii infection in Caribbean Islands. Serum samples of 750 food animals in Grenada and Carriacou were tested for antibodies to T. gondii by the modified agglutination test (MAT). Antibodies to T. gondii (MAT, 1∶25 or higher) were found in 23.1% of 247 pigs, 44.1% of 204 sheep, 42.8% of 180 goats, and 8.4% of 119 cattle. Seroprevalence increased with age, indicating postnatal acquisition of T. gondii. Antibody titers of 1∶200 or higher were present in 65 of 90 seropositive sheep, 61 of 77 seropositive goats, and 23 of 57 seropositive pigs. However, none of the cattle had a MAT titer of 1∶200, suggesting that bovines are a poor host for T. gondii. Results indicate that pigs, sheep, and goats could be important sources of T. gondii infection if their meat is consumed undercooked.     

Effective population sizes in cattle,sheep, horses,pigs and goats estimated from census and herdbook data

Accurate measures of effective population sizes (N_e) in livestock require good quality data and specialized skills for their computation and analysis. N_e can be estimated by Wright’s equation N_e=4MF/(M+ F) (M, F being sires and dams, respectively), but this requires assumptions which are often not met. Total census sizes N_c of livestock breeds are collated globally. This paper investigates whether estimates of N_e can be made from N_c; this would facilitate conservation monitoring. Some N_e methodologies avoid the assumptions of Wright’s equation and permit measurement, rather than estimation, of N_e. Those considered here employ, respectively, linkage disequilibrium (LD) of single-nucleotide polymorphisms (yielding N_e(LD)), and genealogical analysis (rate of increase of inbreeding, DF), yielding N_e(DF). Considering breeds of cattle, sheep, horses, pigs and goats for which N_c and either N_e(LD) or N_e(DF) are known (totals of 203 breeds and 321 breeds, respectively), proportionality has been investigated between N_c and these measures of N_e. N_e(LD) was found to increase with N_c, significantly in sheep and horses, less so in cattle, but not at all in pigs. N_e(DF) was correlated with log₁₀(N_c) in cattle, sheep and horses (53, 56, 43 breeds, respectively). N_e(LD) was correlated in cattle (73 breeds) and pigs (31 breeds) with the log₁₀ transformation of N_e as calculated by Wright’s equation. Further verification and refinement are needed, particularly of census data, but credible predictions of N_e are obtainable by applying the following multipliers to log₁₀(N_c): cattle 17.61, sheep 97.72, horse 70.78. For cattle and pigs, multiplying log₁₀(N_e(Wright)) by, respectively, 40.69 and 60.09, also gives credible predictions. Such census-based estimates of N_e could in principle be generated by non-specialists and are likely to be suited to audits of conservation activity when financial resources or availability of data are limiting. The ratio N_e/N_c varied among species with an overall median value of 0.03, less than a tenth of that typically observed in wild mammals. Characteristics were also investigated of a distinct herdbook-based methodology, namely the development of Wright’s equation to take into account variances of progeny numbers to yield what has been termed here N_e (Hill). Comparison of these values with N_e (Wright) could help to identify breeds with breeding structures conducive or inimical to genetic conservation. However, N_e(Hill) requires breed-specific values for these variances, and this restricts its applicability.     

Offspring sex ratio in sheep,cattle, goats and pigs: influence of season and lunar phase at conception

This study assessed the relationship between season and lunar phase at conception on offspring sex ratio of four livestock species (sheep, cattle, goats and pigs). The sex of 66,830 lambs (1995–2015); 25,546 calves (2011–2015); 5671 kids (2002–2007) and 1916 piglets was recorded. Moon phases were categorized as either new moon, crescent moon, full moon or decrescent moon. Sex ratio, expressed as proportion of males (males/males + females), was tested against the expected value of 1:1. In sheep, offspring sex ratio and lunar phase were not correlated; season had a significant (p = 0.002) effect on offspring sex ratio. The proportion of males born of spring and winter matings was significantly higher than it was among offspring born of summer (p < 0.05) or autumn (p < 0.01) conceptions. Offspring sex ratios in spring (p < 0.05), autumn (p < 0.01) and winter (p < 0.05) differed significantly from the expected. In cattle, moon phase and season did not affect the offspring sex ratio; however, the interaction effect was highly significant (p = 0.001). The overall piglet sex ratio (0.522), and the sex ratios among piglets conceived during a crescent moon and those conceived in summer differed significantly (p < 0.05) from 1:1. Research including additional factors such as hormonal treatments prior to insemination, food availability, weather and maternal and paternal factors might provide the underlying reasons for the effects of season and moon phase on offspring sex ratio in some livestock species.     

Pigment types in sheep, goats, and llamas

Pigment types in various colors of fiber from sheep, goats, and llamas were assayed by a method using high performance liquid chromatography. In these three species the black/gray group is due to eumelanin, which is fully intense in all three species. Red phenotypes are due to pheomelanin and fade considerably with age in fiber from sheep and goats, but not in llamas. This phenomenon has implications on the genetic mechanisms used in generating white fiber. Brown phenotypes in sheep are due to eumelanin, in goats these phenotypes are equivocal, and they were not observed in llamas.     

Conservation genetics in Chinese sheep: diversity of fourteen indigenous sheep (Ovis aries) using microsatellite markers

The domestic sheep (Ovis aries) has been an economically and culturally important farm animal species since its domestication around the world. A wide array of sheep breeds with abundant phenotypic diversity exists including domestication and selection as well as the indigenous breeds may harbor specific features as a result of adaptation to their environment. The objective of this study was to investigate the population structure of indigenous sheep in a large geographic location of the Chinese mainland. Six microsatellites were genotyped for 611 individuals from 14 populations. The mean number of alleles (±SD) ranged from 7.00 ± 3.69 in Gangba sheep to 10.50 ± 4.23 in Tibetan sheep. The observed heterozygote frequency (±SD) within a population ranged from 0.58 ± 0.03 in Gangba sheep to 0.71 ± 0.03 in Zazakh sheep and Minxian black fur sheep. In addition, there was a low pairwise difference among the Minxian black fur sheep, Mongolian sheep, Gansu alpine merino, and Lanzhou fat‐tailed sheep. Bayesian analysis with the program STRUCTURE showed support for 3 clusters, revealing a vague genetic clustering pattern with geographic location. The results of the current study inferred high genetic diversity within these native sheep in the Chinese mainland.     

Behaviour of goats,sheep and cattle and their selection of browse species on natural pasture in a Sahelian area

A study was conducted in the Sahelian zone of Burkina Faso of the behaviour of cattle, sheep and goats on natural pasture and their preference for browse species. Concurrently, a survey was undertaken on a sample of farmers (herders, women and livestock owners) in the study area to estimate the indigenous knowledge of browse species and their utilisation by ruminants. A herd of cattle and flocks of sheep and goats belonging to farmers were followed on pasture, each species during three consecutive days each month, from May 2003 to April 2004, and their activities were recorded regularly every 15 min, as well as the browse species selected and the height reached while browsing. The farmers had good knowledge of the browse species present in the area and their preferential classification depended on the availability of the species, their nutritive value and also other ways of utilising the species concerned. However, some divergence existed in the knowledge of farmers compared to the result from the behaviour study, e.g. some species were mentioned by farmers but not found in the inventory. There was a decline in the feeding activities of all animal species from rainy to dry season, while resting and ruminating activities were increasing at the same time. This decline in time spent feeding was more important for cattle (from 72 to 39% of total time) as they relied on the herbaceous biomass for feeding, while sheep and goats made a shift in the feeding activities from grazing to browsing when the herbaceous biomass decreased. Cattle browsed (leaves and litter) during all the study period for around 4.5% of the time spent on pasture. Sheep and goats showed a peak in browsing activity in the dry season, 28 and 52% of the time, respectively. During the whole observation period, cattle browsed 10 species, with Guiera senegalensis most often selected, with 59, 54 and 84% of browsing time, respectively, in the rainy, post rainy and dry season. G. senegalensis, Combretum micranthum and Balanites aegyptiaca were the most important species browsed by sheep among the 20 browse species selected. Goats browsed more than 20 species daily but the most preferred species were Acacia senegal, B. aegyptiaca and Pterocarpus lucens. The mean height reached by goats when browsing was higher (1.65 m) than that of cattle (1.47 m) and sheep (0.87 m). The result from this study can be used to select species for regeneration and to advice farmers on the importance of herd composition.     

Conservation genetics of amphibians

Amphibians are good models for investigating the genetics of wild animal populations because they are: (1) widely distributed in most ecosystems; (2) easy to sample in breeding assemblages; (3) often philopatric to breeding sites, generating high levels of population genetic structure; (4) amenable to controlled crossings in the laboratory; and (5) of major conservation concern. Neutral genetic markers, mostly microsatellites, have been used successfully in studies of amphibian effective population sizes and structures, and in assessing the consequences of hybridisation. Phylogeography has provided important insights into population histories and the fates of introductions. Quantitative genetic methods have demonstrated adaptive variation in life history traits of importance to fitness and therefore to population viability.