Deoxyribonucleic acid base composition of species ofKlebsiella,Azotobacter andBacillus

Methods of molecular taxonomy were used to study the genome or deoxyribonucleic acid (DNA) of different strains of five genera of nitrogen-fixing bacteria. The DNA base compositions of all strains ofKlebsiella pneumoniae (previously classified as strains ofAchromobacter sp.,Aerobacter aerogenes orK. pneumoniae) occupy a fairly narrow range of values from 56.7 to 62.5% G-C content. No significant difference was observed in the DNA base composition of bacteria which can fix molecular nitrogen and that of strains which do not fix nitrogen.Six strains of the speciesAzotobacter vinelandii and the one strain ofA. chroococcum tested possess similar DNA base composition. The strain ofAzotobacter agilis tested, however, had a DNA base composition different from these seven strains. The G-C content of the strains ofAzotomonas insolita falls within the broad range of thePseudomonas genus (55–70%), but the peritrichous flagellation of these strains eliminates them from this genus. Their classification still remains to be ascertained.Eleven strains of the speciesBacillus polymyxa andB. macerans formed two homogenous groups of organisms with different DNA base composition. The atypical strainB. polymyxa Hino is genetically similar to the strains of the speciesBacillus macerans and perhaps should be reclassified as such.Supported in part by National Science Foundation grant GB-483 and National Institutes of Health grants AI 01417 (11) and based on Ph.D. thesis of senior author (1967).     

Flagellar Morphology of Vibrio parahaemolyticus (Fujino et al) Sakazaki,Iwanami and Fukumi 19631

The flagellar morphology of 88 Vibrio parahaemolyticus strains, including a strain descended from Fujino's original strain EB101 (= ATCC17802 = KM1339) was studied. EB101 and 83 other strains (95%) showed mixed polar and peritrichous type of flagellation when grown on modified MOF (MMOF) agar after 16-hr incubation at 20 C. Cultures containing numerous peritrichous cells showed wiggly movements in moist preparations and rapidly spreading growth in semisolid agar plates. Peritrichous flagella were easily removed mechanically from the soma. The mean wavelengths of polar and peritrichous flagella were 2.53 μm (normal type) and 1.72 μm (atypical curly type) respectively. Peritrichous cells on solid media appeared after incubation for 2.5 hr at 37 C and 7 hr at 20 C. Overnight incubation at 37 C and acidity of the medium due to fermentation of carbohydrate markedly ruined peritrichous flagella. Electron micrograph of cells grown on MMOF agar revealed a sheathed polar flagellum and unsheathed peritrichous flagella. A hook structure was demonstrated at the proximal end of the latter. Polar monotrichous cultures in MMOF broth sometimes contained some cells having several or many peritrichous flagella of atypical curly type. Seven strains of Vibrio cholerae were exclusively polar monotrichous on solid and in liquid media. The flagellation of V. parahaemolyticus is concluded as being a mixed polar-peritrichous type. This fact would indicate that V. parahaemolyticus should be excluded from the genus Vibrio, since the genus Vibrio was defined as polar monotrichous.     

Flagellation and taxonomy ofAcetobacter andAcetomonas

Summary Leifson's findings, that motile, acetate-oxidizing acetic acid bacteria (Acetobacter) have peritrichous flagella, and that motile, non-acetate oxidizing ones (Acetomonas) have polar flagella, of notably short wavelength, are fully confirmed and photographically illustrated. It is not confirmed, however, that the peritrichous flagella ofAcetobacter are always of “orthodox” type with a wavelength of about 2.9 μ, nor that they always tend to be few in number. In one strain ofA. aceti they were numerous, and the wavelength was as short (1.4 μ) as that considered byLeifson to be uniquely confined to the polar flagella ofAcetomonas. Furthermore the polar flagella of the latter genus seem not always to be multitrichous, strains having been found with only a single polar flagellum.     

Isolation and identification of threeCellulomonas spp. from forest soils

Three stains of cellulose-degrading, aerobic, mesophilic bacteria were isolated from forest soils and, from their cultural, biochemical, and physiological characteristics, they were identified as members of the genusCellulomonas. Unusual biochemical characteristics, e.g. urea hydrolysis, were observed in two isolates. These characteristics have not previously been reported for cellulomonads and may prove to be significant for characterization ofCellulomonas spp. The isolates were able to use urea as a N source in cellulose fermentation. All three strains were motile, with one to four peritrichous flagella observed. Amino acid and polysaccharide composition of the cell walls of the three isolates were identical.     

Polar, peritrichous, and lateral flagella belong to three distinguishable flagellar families

The bacterial flagellum transforms its shape into several distinguishable helical shapes (polymorphs) under various environmental conditions. Polymorphs of each type of flagellum stay on a circle in the pitch-diameter (P versus πD) plot, indicating that they all belong to one family. Previously, we showed that the flagellar family of a marine bacterium Idiomarina loihiensis (Family II) differed from the conventional flagellar family of Salmonella typhimurium (Family I). The pitch and diameter of Family II flagella are half those of Family I flagella. We have suggested that Family I encompasses peritrichous flagella, while Family II forms a polar flagellum. In this study, we have surveyed the polymorphs of flagella from 18 other species and categorized their family types. Previous observations were confirmed; Family I form peritrichous flagella and Family II form polar flagella. Furthermore, we found that lateral flagella had helical parameters much smaller than those of the other two Families and thus belong to a new family (Family III).     

DNA base composition of yellowErwinia strains

DNA base composition, expressed as % GC, was determined in 34 strains of yellow-pigmentedErwinia-like organisms from plant, animal and human origin. Organisms calledErwinia herbicola (Graham and Hodgkiss, 1967) have a % GC in the narrow range 55.0 to 56.5, with the exception of strain G 146 which has 58.6% GC. They include the formerBacterium herbicola, Erwinia lathyri, Bacterium typhi flavum and the Muraschi isolates,Erwinia milletiae with 55.8 % falls within the % GC range of theHerbicola group,Erwinia ananas is at the lower end of the group with 54.8 ± 0.4 % GC andErwinia uredovora still lower at 53.7 ± 0.7 % GC. These data and the compositional distribution of the DNA fragments do not exclude the inclusion of these organisms into the genusErwinia.     

Effect of temperature,salts, pH and other factors on the development of peritrichous flagella in Vibrio alginolyticus

The development of peritrichous flagella and, consequently, swarming of Vibrio alginolyticus depend on a complex relationship between temperature, salt concentrations and pH. At temperatures above 28°C V. alginolyticus did not develop peritrichous flagella unless certain minimal concentrations of NaCl are present: the higher the temperature, the higher the NaCl concentrations required for peritrichous flagella synthesis. This requirement for NaCl at high temperatures is much more pronounced at pH 9 than at pH 6. High temperatures and low concentrations of NaCl also inhibited swarming of cells already armed with peritrichous flagella. Other cations, such as Li⁺, K⁺ and Mg²⁺, replaced NaCl only at temperatures below 28°C.     

The systematic position of the genusTainania [Hym.: Chalcididae]

A comparative study of the genusTainania Masi and the genusAntrocephalus Kirby revealed that the former genus does not have sufflcient good morphological characteristics to hold the status of a separate genus from that of the genusAntrocephalus. The important morphological characterstics of the genusAntrocephalus have been given.

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Résumé La comparaison du genreTainania Masi et du genreAntrocephalus Kirby montre que le premier n'a pas de caractères morphologiques assez bons pour justifier d'être distingué du second. Les caractères morphologiques importants du genreAntrocephalus sont rappelés.

     

The taxonomic status of Lineola longa

Summary Studies on the morphological and physiological characteristics of two strains of Lineola longa showed that these aerobic bacteria form endospores, are Gram-positive and have peritrichous flagella. On the basis of these observations it was concluded that L. longa is, in fact, a Bacillus species. This conclusion was strengthened by the fact that both strains exhibited nutritional characteristics often encountered among the aerobic sporeforming rods, such as requirements for biotin and thiamine in the growth medium. The base ratio of the DNA purified from L. longa was found to be within the range reported for a number of species of Bacillus.Additional investigation of the nutritional behavior of L. longa indicated that neither strain studied used glucose as an oxidizable substrate or as a carbon source. However, fatty acids and amino acids were readily utilized for growth. L. longa, on the basis of its morphological and physiological properties, could not be identified with any of the established species of Bacillus. It is suggested, therefore, that L. longa be recognized as a new species within the genus Bacillus and that it be renamed Bacillus macroides.     

Isolation of Selenomonas ruminantium from an aquatic ecosystem

A crescentic Gram-negative rod-shaped bacterium motile by a laterally inserted tuft of flagella was isolated from a boggy ditch water habitat. Cells occurred usually singly or in pairs, but sometimes short chains, long helical cells or spheroplasts with flagella still attached were observed. Its metabolism was obligate fermentative. The fermentation of glucose yielded mainly acetate and propionate. It grew with a generation time of 1 h 50 min. The DNA base ratio was found to be 51.6 mol % G+C. The characteristics of this organism indicated that it belongs to the genus Selenomonas closely similar to and by its main characteristics identical with the rumen bacterium Selenomonas ruminantium. The differing characteristics — production of catalase and lower temperature optimum (25°C) — interpretable as the result of adaptation to the specific environmental conditions may justify classification of the isolate into a new subspecies of S. ruminantium named Selenomonas ruminantium subsp. psychrocatalagenes. Additional information on the DNA base composition in strains of Selenomonas ruminantium (GA 192 and HD 1) was obtained.     

Heliobacterium sulfidophilum sp. nov. andHeliobacterium undosum sp. nov.: Sulfideoxidizing heliobacteria from thermal sulfidic springs

Two new species of heliobacteria isolated from cyanobacterial mats of two alkaline sulfidic hot springs are formally described. Strains BR4 and BG29 are assigned to anoxygenic phototrophic bacteria of the familyHeliobacteriaceae, since they possess the unique properties of this taxon: strict anaerobiosis, formation of bacteriochlorophyllg, the lack of extensive intracytoplasmic membranes and chlorosomes, an unusual cell wall structure, and phylogenetic relatedness to the low G+C gram-positive eubacteria. Based on the 16S rDNA sequence similarity, strains BR4 and BG29 are assigned to the genusHeliobacterium and described as two new species of this genus:Heliobacterium sulfidophilum sp. nov. andHeliobacterium undosum sp. nov. The G+C content of the DNA is 51.3 mol % inHbt. sulfidophilum and 57.2-57.7 mol % inHbt. undosum. The cells ofHbt. sulfidophilum are rods, and the cells ofHbt. undosum are slightly twisted spirilla or short rods. Both new bacteria are motile by peritrichous flagella.Hbt. sulfidophilum produces endospores. The new bacteria are strict anaerobes growing photoheterotrophically on a limited range of organic compounds. In the dark, they can switch from photosynthesis to the slow fermentation of pyruvate. Biotin is required as a growth factor. Both species are highly tolerant to sulfide (up to 2 mM at pH 7.5) and oxidize it photoheterotrophically to elemental sulfur; photoautotrophic growth was not observed. The temperature optimal for growth ofHbt. sulfidophilum andHbt undosum is 30–35‡C, and the optimal pH is 7–8.     

Pteromalidae etEulophidae nouveaux d'Europe (Hym., Chalcidoidea)

Summary In the present paper the Author has described three new genera ofPteromalidae, two new species of the genusEnaysma Del. and one of the genusEpilampsis Del. (Euloph. Entedontinae). The first Pteromalid genus,Stenoselma, is closely related to the well knownAnisopteromalus Ruschka; the second new genus,Apelioma, has been proposed forDinotiscus (Dinotus) pteromalinus Thomson; the third,Aggelma, has been described for the new speciesabdominalis, collected in Central Europe onPinus montana. The other new species ofEntedontinae has been bred from leaf-miners (Lepidoptera).      

A new solitary coral genus of the suborder Heterocoeniina (Scleractinia) from the Aptian (Cretaceous) of Spain

The new scleractinian coral genusHexasmiliopsis is described on the basis of material from the Early Aptian (Early Cretaceous) of Murcia (Spain). The new genus of the Heterocoeniidae family is characterised by its solitary growth form, a very strong main septum and the presence of apophysal septa. It is closely related to the generaHexasmilia (phaceloid growth form),Rodinosmilia andTiarasmilia (both without main septum). The genus is monospecific and represents only the type species,Hexasmiliopsis saldanai.      

Molecular phylogenetic study of the basidiomycetous anamorphic yeast genusTrichosporon and related taxa based on small subunit ribosomal DNA sequences

Small subunit ribosomal DNA sequences of all species of the basidiomycetous anamorphic yeast genusTrichosporon were determined, and phylogenetic trees were constructed by the neighbor-joining and maximum likelihood methods. The sequence data showed that, with the exception ofT. pullulans, the genus is monophyletic, although its members have two different major ubiquinones, Q9 and Q10. The genus can be divided phylogenetically into three major clusters. Species with Q10 as the major ubiquinone constitute a single cluster, while those with Q9 form two clusters.Trichosporon pullulans was phylogenetically distinct from other taxa of the genus. It is located in a cluster containingCystofilobasidium capitatum, Mrakía frigida, Xanthophyllomyces dendrorhous and three species ofUdeniomyces. This result sugests thatT. pullulans does not belong to the genusTrichosporon.     

Phylogenetic relationships among genera of Massonieae (Hyacinthaceae) inferred from plastid DNA and seed morphology

The tribe Massonieae Baker (Hyacinthaceae-Hyacinthoideae) presently consists of about 19 genera and 230 species distributed from Africa (south of the Sahara) to Madagascar and India. Based on atpB and trnL-F DNA sequences the tribe is monophyletic only when the genus Pseudoprospero is excluded from Massonieae. In most trnL-F trees, this genus occupies a basal position within subfamily Hyacinthoideae and is sister to the rest of the subfamily. Molecular data suggest that the remaining genera of Massonieae do not share common ancestry with the Eurasian/North-African tribe Hyacintheae Dumort. (Scilla, Hyacinthus and allies), and thus a narrow concept of the essentially Eurasian genus Scilla is supported. Members of well-supported clades in Massonieae usually show similarities in seed characteristics as determined by scanning electron microscopy. Phylogenetic position and seed morphology indicate that Massonia angustifolia and M. zeyheri do not belong to the genus Massonia but fall into a clade together with Daubenya, Androsiphon and Amphisiphon. The genus Whiteheadia appears paraphyletic in the 50% majority rule trnL-F tree and occupies a basal position next to Massonia. However, in the strict consensus tree neither monophyly nor polyphyly can be excluded for this genus. Seed appendages are documented for members of the genera Ledebouria and Lachenalia. Within the genera of Massonieae there is a tendency towards bending of the seed axis. This phenomenon is most obvious within the genus Lachenalia. Delimitation of genera based on seed morphology largely agrees with the results of molecular studies. Correlation between number, size and color of seeds, geographical distribution and phylogenetic position of the genera are discussed. Electronic Publication     

Gas Chromatographic Analysis of Volatile Esters in Wines

We isolated a new aerobic gram negative collagenolytic bacterium, strain CRZV₁. This strain is yellow pigmented, non motile; it poorly degrades the sugars and its proteolytic activity corresponds to one enzyme, a collagenase which is produced in media with collagen, or collagen like substrates. The strain CRZV_l, presents many similarities with Flavobacteria. However, the GC content of the DNA, which is 65%, excludes our collagenolytic strain from the genus Flavobacterium, where all the species have GC content between 30 and 42%. All the strains, already described as Flavobacteria, the GC contents of which are situated between 55 and 70%, are actually unclassified. They could be included in the genus Empedobacter. This genus is not in the approved list of bacterial names, so we only consider this new collagenolytic bacteria as a gram negative, aerobic, yellow pigmented bacteria.     

Peritrichous flagellation in Plesiomonas shigelloides strains.

In total, 131 strains of Plesiomonas shigelloides isolated from various sources were tested for peritrichous flagella by a flagella staining method. When incubated on a solid medium for 18 hr at 25 C, peritrichous flagella were demonstrated in 89 (68%) of them. With an electron microscope, the peritrichous flagella were clearly distinguished from the lophotrichous ones by their wavelength.     

The cell biology of peritrichous flagella in Bacillus subtilis

Bacterial flagella are highly conserved molecular machines that have been extensively studied for assembly, function and gene regulation. Less studied is how and why bacteria differ based on the number and arrangement of the flagella they synthesize. Here we explore the cell biology of peritrichous flagella in the model bacterium Bacillus subtilis by fluorescently labelling flagellar basal bodies, hooks and filaments. We find that the average B. subtilis cell assembles approximately 26 flagellar basal bodies and we show that basal body number is controlled by SwrA. Basal bodies are assembled rapidly (< 5 min) but the assembly of flagella capable of supporting motility is rate limited by filament polymerization (> 40 min). We find that basal bodies are not positioned randomly on the cell surface. Rather, basal bodies occupy a grid‐like pattern organized symmetrically around the midcell and that flagella are discouraged at the poles. Basal body position is genetically determined by FlhF and FlhG homologues to control spatial patterning differently from what is seen in bacteria with polar flagella. Finally, spatial control of flagella in B. subtilis seems more relevant to the inheritance of flagella and motility of individual cells than the motile behaviour of populations.     

Peritrichous flagella in mesophilic strains of Aeromonas

A total of 186 mesophilic strains of Aeromonas, comprising 151 A. hydrophila and 35 A. caviae, were tested for peritrichous flagella by Leifson's staining method. When incubated on solid medium for 18 hr at 22 C, peritrichous flagella were demonstrated in 28 (18.5%) of the 151 strains of A. hydrophila and in 6 (17.1%) of the 35 strains of A. caviae. The peritrichous flagella in these 34 mesophilic strains of Aeromonas were also observed by electron microscopy.     

The classification of luminescent bacteria

Summary The luminescent bacteria are logically placed in two genera. The common coccoid and frequently non-motile species placed byBeije-rinck first in his genusPhotobacterium, 1889 under the namePhotobacterium phosphorescens syn.Bacterium phosphorescens Fischer, should be recognized as the type species ofPhotobacterium. Other characters indicate that this genus should be placed in the FamilyPseudomonadaceae Winslowet al.. and should include other straight, rod-shaped, luminescent, polar flagellate bacteria that ferment glucose without, however, necessarily producing gas (H₂ and CO₂) as does the type species. The species that have the form of vibrios should be accepted as members of the genusVibrio as suggested by several previous investigators. They have characters much like those ofVibrio comma, the type species of the genusVibrio.