Self-similar properties of the spatial structure of intertidal macro- and microbenthic communities

Spatial distribution (SD) of White Sea intertidal soft-bottom communities was studied at scales from decimetres to dozens of kilometres on the basis of an extensive dataset (464 samples of macrofauna, 349 samples of ciliates, and 333 samples of diatoms). We used the information index of structural heterogeneity D(I) (Azovsky et al., 2000 // Mar. Biol. 136 (3): 581-590) to characterize spatial variability in the species composition of the communities at different extent (total area surveyed) and grain (finest spatial resolution). The type of distribution was determined via the relation between D(I) and parameters of the spatial scale (extent and grain). At small scale (in terms of extent), all the communities were distributed randomly (mosaic SD). At larger scales, the estimated spatial variability depended neither on extent nor grain, exclusively on their ratio, i.e., was scale-invariant. This means that at some scale the spatial patterns of communities display self-similar properties (fractal SD). Such SD was found at a rather wide range of scales scales: 10(1)-10(4) m for the macrofauna, 10(0)-10(3) m for the ciliates, and 10(-1)-10(2) m for the diatoms. At still greater scales, patchy or gradient patters were observed. Thus, the ranges of fractal distribution were proportional to the average size of the organisms (approximately 10(4)-10(7) times the body size). We suppose that such spatial pattern reflects community self-organization in a relatively homogeneous environment and may be the most efficient way to realize the highest structural diversity on the basis of pre-formed complexes of predominant species. We also suppose that fractal-like patterns may be a general feature of the spatial organization of communities.     

Size‐dependent species‐area relationships in benthos: is the world more diverse for microbes?

Using original and literature data on species richness, I compared the species-area relations for 5 different size classes of the Arctic benthos: macrofauna sensu lato, polychaetes, nematodes, ciliates and diatom algae. The data pool covered a wide range of areas from single samples to the whole seas. Both the slopes and intercepts of the curves depended significantly on the logarithm of the mean body size of the group. The number of small species (ciliates and diatom algae) showed relatively higher local diversity but increased more slowly with the area than the number of larger ones. Thus, both α- and β-components of species diversity of the marine benthos were size-dependent. As a consequence, the actual relations between number of species and their physical size are spatially scale-dependent: there are many more species of smaller size classes in any one local community, but at a global scope the situation changes drastically. The possible reasons are discussed, including dispersal efficiency, rates of speciation and size-dependent perception of environmental heterogeneity. Body size is suggested to be the important scaling factor in manifestation of so-called "general ecological laws".     

Intestinal ciliate composition found in the feces of racing horses from Izmir, Turkey

Species composition and distribution of intestinal ciliates were investigated in the feces from 15 racing horses living near Izmir, Turkey. Thirty-seven species belonging to 21 genera were identified. Although no new species were observed, this is the first report on intestinal ciliates in racing horses living in Turkey. The mean number of ciliates was 26.4 ± 13.9 × 10(4) cells ml(-1) of feces and the mean number of ciliate species per host was 18.8 ± 7.1. No ciliates were observed in one horse. Bundleia and Polymorphella were found to be the two dominant genera, occurring in high proportions. In contrast, Didesmis and Prorodonopsis were only observed at a low frequency. Bundleia nana, Blepharoconus hemiciliatus, Paraisotrichopsis composita, Prorodonopsis coli and Spirodinium equi were newly recorded from Turkey.     

Structure and diversity of shallow soft-bottom benthic macrofauna in the Gulf of Lions (NW Mediterranean)

Samples of soft-sediment macrobenthos from 92 sites between 10 and 50 m depth were used to assess (1) the main soft-bottom macrofauna communities in the Gulf of Lions, (2) the different components of the diversity of benthic macrofauna in this area, and (3) the relevance of the use of major taxonomic groups as surrogates for the analysis of the structure and diversity of total macrofauna. Three main communities were identified by cluster analysis and associated procedures. These communities corresponded well to the assemblages recently identified on the basis of polychaete composition. The α-diversity indices were in accordance with those reported for similar communities in the Mediterranean. Conversely, the β-diversity value was higher than the few other data available in the literature for marine soft-bottom macrofauna. The total number of species in the studied area estimated by the “total species accumulation curve” (TS) method was 2,319, which was only 10% higher than the number obtained by extrapolation of the species–area curve. The similarity matrix based on polychaetes correlated best with the one based on total macrofauna. Polychaetes and crustaceans were also the best surrogates of total macrofauna when assessing α-diversity (except in the case of Δ*). Conversely, molluscs were the best surrogates of total macrofauna β-diversity. Our results show that the choice of an optimal surrogate for total benthic macrofauna depends on the characteristic of the benthic macrofauna to be studied. Moreover, this choice is also dependent on the environment to be studied.     

Biodiversity of terrestrial protozoa appears homogeneous across local and global spatial scales

Free-living microbes are by far the most abundant group of organisms in the biosphere, yet estimates of global species richness remain nebulous, and there is no consensus regarding the likely geographical distribution of species. Both uncertainties are addressed by the suggestion that the vast abundance of microbes may drive their ubiquitous random dispersal; for this would also make it likely that global species richness is relatively low. Here we test the idea of ubiquitous dispersal of testate amoebae and ciliates living in soil. We analysed their abundance and species richness in 150 soil samples collected from the one-hectare grassland site at Sourhope in Scotland, and in comparable published data from 1500 soil samples collected worldwide. Following taxonomic revision and removal of synonyms, there remained a total of 186 taxa (91 testate and 95 ciliate) recorded from both Sourhope and other places in the world. A fundamental pattern of random spatial distribution of species was revealed in species that are relatively rare. This probably arises from random dispersal, for when localised population growth occurs, the distributions become aggregated, as in virtually all metazoan species. We find no evidence for geographically-restricted protozoan morphospecies at spatial scales of 4 m², 10,000 m², or worldwide. Species that are locally rare or abundant are similarly rare or abundant on a global scale. Approximately one third of the global diversity of soil protozoa was found at the one-hectare grassland site in Scotland, but this is a minimum figure, for recorded species richness is proportional to sampling effort, as shown here.     

Composition,diversity and distribution of microbenthos across the intertidal zones of Ryazhkov Island (the White Sea)

The composition and distribution of the main unicellular eukaryotic groups (diatom algae, ciliates, dinoflagellates (DF), other phototrophic (PF) and heterotrophic flagellates (HF)) were investigated in sandy sediments at five stations allocated across the tidal sheltered beach of the White Sea. Overall, 75 diatoms, 98 ciliates, 16 DF, 3 PF and 34 HF species were identified; some are new records for the White Sea. Common species for each group are illustrated. Diatoms and ciliates showed high alpha-diversity (species richness per sample), whereas flagellates were characterized by high beta-diversity (species turnover across the intertidal flat). Each group demonstrated its own spatial pattern that was best matched with its own subset of abiotic variables, reflecting group-specific responses to environmental gradients. Species richness increased from the upper intertidal zone seaward for ciliates but decreased for HF, whereas autotrophs showed a relatively uniform pattern with a slight peak at the mid-intertidal zone. Across the littoral zone, all groups showed distinct compositional changes; however, the position of the boundary between “upper” and “lower” intertidal communities varied among groups. Most of the species found at Ryazhkov Island are known from many other regions worldwide, indicating a wide geographic distribution of microbial eukaryotic species.     

拉萨河中上游夏秋季纤毛虫群落时空变动及其与环境的关系

为揭示中国西藏高原河流浮游纤毛虫群落结构特征及与水环境的关系,于2015—2016年的8月和11月,利用25号浮游生物网,分别在拉萨河中上游共8个代表性采样点,共采集64个水样。物种鉴定采用活体观察和固定染色相结合的方法。共鉴定出纤毛虫91种,夏季49种,各样点物种数由小到大依次为:S2S4S8S5S1S3=S7S6。秋季64种,各样点物种数由小到大依次为:S4S3=S1=S2=S5S8S6=S7。夏季各样点丰度为1.2×10~4—5.6×10~5个/L,秋季各样点丰度在1.2×10~4—2.6×10~5个/L之间。夏、秋季的优势种均为12种且优势种组成与分布不同,表现该流域纤毛虫存在明显的时空差异;群落结构分析显示:纤毛虫群落结构简单,物种组成多样性低而分布均匀;纤毛虫营养功能结构分析表明,夏季B、S类群的物种丰富度低于秋季;相关分析表明,总磷和总氮是影响夏季纤毛虫物种多样性的主要环境因子,并且浊度、NH_4-N和NO_3-N是影响秋季纤毛虫的主要环境因子。     

甘南亚高寒草甸稀有种对物种多样性和物种多度分布格局的贡献

稀有种不仅影响群落的物种多度分布格局, 同时也是α多样性的重要贡献者。本研究主要通过加性分配和Fortran软件的RAD程序包拟合的方法, 研究了甘南亚高寒草甸不同坡向物种多样性及多度分布格局的变化, 分析了物种多度分布格局及其α多样性的变化特征, 确定了稀有种在物种多度分布格局中的相对贡献。结果表明: (1)在南坡到北坡的变化中, 环境因子差异比较明显, 其中, 土壤全磷、有机碳、速效磷、碳氮比及含水量呈递增趋势; 土壤氮磷比和pH值呈递减趋势; 土壤全氮在西坡显著低于其他坡向, 而速效氮在所有坡向上差异不显著。(2)稀有种对群落物种多样性的影响在南-北坡向梯度上依次增大, 去除稀有种的影响在各坡向均高于去除非稀有种, 可见, 稀有种在甘南亚高寒草甸物种多样性中的相对贡献高于非稀有种。(3)各坡向的稀有种资源获取模式以随机分配占领模式(random fraction模型)为主, 而非稀有种则以生态位优先占领模式(geometric series模型)为主。由于稀有种有较大的扩散率, 在物种多样性较高的生态系统中, 物种之间的生态位重叠会更加明显, 从而抑制物种多样性的增加, 因此能达到维持原有物种多样性的目的。     

Intestinal ciliate composition found in the feces of the Turk rahvan horse Equus caballus, Linnaeus 1758

Species composition and distribution of large intestinal ciliates were investigated in the feces from 15 Turk rahvan horses, living in the vicinity of Izmir, Turkey. Twenty-two ciliate genera consisting of 36 species were identified. This is the first report on intestinal ciliates in Turk rahvan horses and no previously unknown species were observed. The mean number of ciliates was 14.2 ± 13.9 × 10⁴ cells ml⁻¹ of feces and the mean number of ciliate species per host was 9.9 ± 7.1. No ciliates were observed in 2 horses. Bundleia and Blepharocorys were considered to be the major genera since these ciliates were constantly found in high proportions. In contrast, Paraisotricha, Didesmis and Gassovskiella were only observed at low frequencies. The ciliates found in this survey had almost the same characteristics as those described in previous reports, suggesting that there was no significant geographic variation in the intestinal ciliate fauna of equids.     

Intestinal ciliate composition found in the feces of the Cypriot wild donkey,Equus asinus Linnaeus, 1758

Species composition and distribution of large intestinal ciliates was investigated in the feces from 13 Cypriot wild donkeys, free-living in the Karpaz national park, Northern Cyprus. We identified 16 ciliate genera and 22 species. This is the first report on intestinal ciliates in Cypriot wild donkeys, and no endemic species were observed. The genus Cycloposthium occurred in all animals. The mean number of ciliates was 3.0±2.5×10⁴ cells ml^?1 of feces and the mean number of ciliate species per host was 6.5±4.8. Characteristics of the wild donkey ciliates was almost identical to those reported in other equids from various regions around the world. We thus conclude that there is no pronounced geographic variation in the intestinal ciliate fauna of equids.     

植物空间分布格局中邻体距离的概率分布模型及参数估计

最近邻体法是一类有效的植物空间分布格局分析方法,邻体距离的概率分布模型用于描述邻体距离的统计特征,属于常用的最近邻体法之一。然而,聚集分布格局中邻体距离(个体到个体)的概率分布模型表达式复杂,参数估计的计算量大。根据该模型期望和方差的特性,提出了一种简化的参数估计方法,并利用遗传算法来实现参数优化,结果表明遗传算法可以有效地估计的该模型的两个参数。同时,利用该模型拟合了加拿大南温哥华岛3个寒温带树种的空间分布数据,结果显示:该概率分布模型可以很好地拟合美国花旗松(P.menziesii)和西部铁杉(T.heterophylla)的邻体距离分布,但由于西北红柏(T.plicata)存在高度聚集的团簇分布,拟合结果不理想;美国花旗松在样地中近似随机分布,空间聚集参数对空间尺度的依赖性不强,但西北红柏和西部铁杉空间聚集参数具有尺度依赖性,随邻体距离阶数增加而变大。最后,讨论了该模型以及参数估计方法的优势和限制。     

Relationship of Sponge Macrofauna with the Morphology of their Hosts in the North Aegean Sea

The associated macrofauna of four Aegean Sea sponge species (Agelas oroides, Petrosia ficiformis, Ircinia variabilis and Aplysina aerophoba) was compared. The total number of individuals and species was found to be related to sponge volume for all sponge species. The associated macrofaunal weight per individual on all sponge species was negatively correlated with sponge volume. Sponge complexity, as measured by sponge surface area to biomass ratio, was not a consistent predictor of associated macrofauna abundance or diversity. Sponge macrofauna species were not host specific and their relative abundances differed among sponge species.     

Scale‐dependent frequency distributions of plant species in dune slacks: Dispersal and niche limitation

Question: How do distribution patterns change with increasing scale level, and can this shift be attributed to dispersal and/or niche limitation? Location: Dune slacks at the Belgian and North French coast. Method: Frequency distribution patterns of species were tested over different scale levels (ranging from 0.008 to 45 km²). Analyses were executed for the total species pool and for subsets of species with high and low dispersal rates and habitat generalist and specialist species. Results: Species distributions for the total species pool on scale levels larger than 1.5 km² were unimodal, with an overrepresentation of rare species. With decreasing scale level, the proportion of common species increased, leading to weak bimodality. Distributions of subsets of slowly dispersing and habitat specialist species are on all scale levels characterised by a strongly unimodal pattern. The subset of species with high dispersal rates and habitat generalist species has a higher proportion of common species, leading to a significant core peak. Conclusions: On all scale levels both dispersal and niche limitation are hampering the wider distribution of rare species. However, since isolation and habitat heterogeneity are limited on the smaller scale levels, a larger proportion of well dispersing and habitat generalist species is able to occupy a high number of patches, resulting in a significant core peak for the total species pool.     

三峡水库运行期间原生动物群落的时空异质性

于2010年10月—2011年6月三峡水库正常运行周期内对库区干流原生动物进行调查,研究其空间分布及水库周期排蓄期间的变化。共检测到原生动物99种,蓄水后纤毛虫有增多的趋势。水库运行的不同阶段优势种不同,大致演变为:砂壳纤毛虫(蓄水期)—非砂壳类纤毛虫(高位运行期间)—有壳肉足虫(低位运行期间)。不同水域优势种也存在差异,从上游到下游特征指示种变化为:有壳肉足虫(变动回水区)—纤毛虫(湖泊区)。结果表明,三峡水库原生动物的分布具有明显的时空异质性(P0.05),影响原生动物时空分布的主要因素有透明度、温度、电导率和叶绿素a。原生动物平均密度为952.19个/L,平均生物量为8.14μg/L。蓄水期上游现存量高于下游,低位运行期间则低于下游。原生动物Marglef和Shannonn-Weiver多样性指数平均值分别为3.78和2.18,1月份最低,6月份最高。蓄水175 m后上游变动回水区原生动物具有较高的丰度。水库冬蓄夏排的运行模式模糊了河流本身的季节变化,使原生动物的种类和现存量更多的受水库水动力学的影响,使水体理化因子和水文特征呈现明显的时空差异,最终形成原生动物种群的时空异质性分布。     

Characteristics of macrofauna and their response to aquiculture in Yueqing Bay, China

Four seasons of investigations on macrofauna in Yueqing Bay, China were carried out from August 2002 to May 2003. One hundred and twenty four species of macrofauna were identified, including 41 species of polychaeta, 37 species of mollusc, 22 species of crustacea, 10 species of echinoderm and 14 others. The average biomass was 41.95 g·m⁻² and the average density was 85 ind·m⁻². The echinoderm contributed the highest proportion (about 60%) to the total biomass, and the mollusc contributed the maximum proportion (about 35%) to the total density. Biomass and density in spring were higher than those in other seasons. This article analyzes the macrofauna distribution, compares the study results with the history data of Yueqing Bay and adjacent bays, and discusses the response of macrofauna community to the aquiculture in Yueqing Bay.     

Structural complexity of species assemblages and spatial scale of community organization: A case study of marine benthos

In this paper, definitions and measures of complexity with regard to biological communities are briefly considered. A new topological approach that considers the community's complexity in terms of groups of species coherently varied in space or time is proposed. For a given set of samples, the number of such groups is related to the minimal number M of axes necessary to represent the original configuration of the data set. I interpret this “minimal dimensionality of structure” as the number of independent factors of structural variability and its normalized value M/M_MAX as a measure of the organizational complexity of a community. The M value can be estimated as the number of significant axes obtained by ordination procedures. The percentage of total variance explained by these axes, T, is used as measure of structural rigidity. This approach is applied to data on the multi-scaled spatial distribution of marine benthic ciliates and macrofauna. Both the M and the T values obtained by principal component analysis show significant scale-dependence with an evident threshold at some critical area, with values of zero below this threshold, then increasing sharply as the area extends beyond the threshold. The critical scale of community organization ranges from hundreds of meters to kilometers for macroorganisms, whereas several meters are sufficient when considering ciliates.     

Diversity and geographic distribution of ciliates (Protista: Ciliophora)

About 4,500 free-living ciliate morphospecies have been described, applying an average synonymy rate of 20%. We estimate that 83–89% of the ciliate diversity is still undescribed, using the following probabilities: detailed habitat studies suggest that the described number of morphospecies must be doubled: 4,500 → 9,000; this figure has to be increased by about 50% due to species with similar interphase morphology but different resting cysts: 9,000 → 13,500; the genetic and molecular data suggest that this value must be doubled or trebled: 13,500 → 27,000 to 40,000 free-living, biological ciliate species. The knowledge on geographic distribution of ciliates heavily depends on flagship species and statistical analyses because reliable faunistic studies are rare and molecular data are still in its infancy. We present a list of 52 ciliate flagship species as a testable hypothesis, i.e., the hypothesis of restricted distribution of certain ciliate species must be refused when a considerable number of them is found in all or most biogeographic regions. Flagship species and statistical analyses consistently show Gondwanan and Laurasian ciliate communities, suggesting that the split of Pangaea deeply influenced ciliate distribution and rare species play a key role in geographic differentiation. However, there is also substantial evidence for continental, regional, and local endemism of free-living ciliates. The molecular studies usually show a high level of genetic diversity underlying ciliate morphospecies, suggesting that morphologic and molecular evolution may be decoupled in many ciliate species. Molecular studies on ciliate biogeography are at variance, possibly because most are still focusing on single molecular markers. In sum, the data indicate that ciliate biogeography is similar to that of plants and animals, but with an increased proportion of cosmopolites, favouring the moderate endemicity model. Special Issue: Protist diversity and geographic distribution. Guest editor: W. Foissner.     

Ciliate populations in temporary freshwater ponds: seasonal dynamics and influential factors

SUMMARY 1. The ciliate populations of two temporary ponds in southern Ontario were studied throughout their aquatic phases in 2001. Pond I (～1 ha) held water for 98 days, whereas Pond II (～0.25 ha) held water for 34 days. Populations were assessed both within the ponds themselves and within a series of enclosures in which invertebrate predator pressure was manipulated. 2. In the natural pond water, total ciliate abundance in Pond II rose rapidly from day 1 increasing two orders of magnitude by day 7. In contrast, total abundance in Pond I began at the same level as in Pond II but increased much more slowly, reached a plateau of around 500 individuals L^?1, and increased again late in the hydroperiod. 3. Despite being only 500 m apart, the two ponds were fairly dissimilar in terms of their species richness and species composition. Pond I contained 50 species compared with 70 species for Pond II, with only 24 species shared. Additional species occurred within the enclosures raising the total species richness to 145 species; 88 from Pond I, 104 from Pond II, with 47 species (30%) in common. Pond II contained more mid‐sized ciliates (50–200 μm), whereas Pond I was dominated by smaller ciliates, especially in mid‐May and early June. In Pond I, cumulative species richness throughout the hydroperiod was highest in the predator addition enclosures (65 ± 4 species), followed by the partial‐predator exclusion enclosures (50 ± 4). Lowest species richness was found in the control enclosures (39 ± 2) and in the pondwater controls (39 ± 0). Differences between the ciliates in the natural pond water and the enclosures appeared to be related to a greater concentration of phytoplankton within the enclosures (perhaps resulting from extensive growth of duckweed, Lemna, outside), and higher densities of zooplankters in the pond. 4. The physicochemical environment influenced species richness, total abundance and the number of rare species (27 in Pond II versus 13 in Pond I). Variation in ciliate abundance in Pond I could be explained by the number of days after filling (39%) and enclosure treatment (23%). These two parameters also explained 72% of the variation in species richness in Pond I (46 and 26%, respectively). Sixty‐five per cent of the variation in abundance in Pond II could be explained by the measured parameters: number of days after filling 27%, pH 19%, and nitrate levels 12%. Fifty‐two per cent of the variation in species richness was explained by the environmental parameters, of which pH was the most influential. Species succession was a strong feature of both ponds and its relationship to environmental variables and the presence of other organisms is discussed. 5. Addition of invertebrate predators resulted in higher abundance and higher species richness for a limited time period in one of the ponds – suggesting that differences in foodweb dynamics may influence ciliate community composition.     

戈壁生态系统蚁穴微生境对大型土壤动物多样性的影响

收获蚁蚁穴是戈壁生态系统中重要的微生境, 它通过汇集凋落物和改善土壤环境强烈影响动植物的分布及多样性。鉴于此, 本文选择戈壁荒漠收获蚁(Messor desertus)蚁穴为研究对象, 于2020年5月、6月和10月利用陷阱法调查了蚁穴及毗邻裸地大型土壤动物的种类组成及数量变化, 并分析其影响要素。结果表明: (1) 10月, 蚁穴和裸地间大型土壤动物群落组成存在显著差异, 而5月和6月二者间相差较小, 10月(62.9%)蚁穴和裸地大型土壤动物的平均相异性高于5月(34.8%)和6月(39.3%); (2) 5月, 蚁穴大型土壤动物均匀度指数显著低于裸地, 6月, 蚁穴大型土壤动物活动密度和类群丰富度均显著高于裸地, 10月, 蚁穴大型土壤动物类群丰富度和多样性指数均显著高于裸地; (3)荒漠收获蚁蚁穴显著提高了其他食性土壤动物的活动密度及类群丰富度, 还增强了捕食性和非捕食性土壤动物的相互作用关系并改变了荒漠收获蚁与蚁穴大型土壤动物类群的种间相互作用关系; (4) pRDA排序结果表明, 土壤电导率、全氮和粉粒含量是影响蚁穴和裸地大型土壤动物分布的主要土壤因子。总之, 戈壁生态系统荒漠收获蚁蚁穴微生境提高了大型土壤动物多样性, 改变了大型土壤动物类群间的营养和非营养关系, 这会影响大型土壤动物的营养结构及其功能。     

Characteristics of macrofauna and their response to aquiculture in Yueqing Bay, China

Four seasons of investigations on macrofauna in Yueqing Bay, China were carried out from August 2002 to May 2003. One hundred and twenty four species of macrofauna were identified, including 41 species of polychaeta, 37 species of mollusc, 22 species of crustacea, 10 species of echinoderm and 14 others. The average biomass was 41.95 g·m^?2 and the average density was 85 ind·m^?2. The echinoderm contributed the highest proportion (about 60%) to the total biomass, and the mollusc contributed the maximum proportion (about 35%) to the total density. Biomass and density in spring were higher than those in other seasons. This article analyzes the macrofauna distribution, compares the study results with the history data of Yueqing Bay and adjacent bays, and discusses the response of macrofauna community to the aquiculture in Yueqing Bay.