Isolation and characterization of fourteen polymorphic microsatellite markers in the viperine snake Natrix maura

Nineteen polymorphic microsatellite loci were identified and developed for Natrix maura. Polymorphism was assessed for 120 individuals sampled across four sampling sites from the French Pyrenees Mountains. The number of alleles per locus ranged from 3 to 15, and expected heterozygosity per locus ranged from 0.227 to 0.863. We tested for deviation from Hardy–Weinberg equilibrium and linkage disequilibrium and assessed the presence of null alleles for all loci, resulting in a selection of 14 high‐quality polymorphic markers. These markers will be extremely useful in identifying fine‐scale genetic structures and providing insight into conservation management plans of this species.     

Aggregative behavior of bacteria isolated from canine dental plaque

Interbacterial adhesion of bacteria isolated from canine dental plaque was assessed by performing a visual coaggregation assay. Using conditions mimicking those likely to be encountered in vivo, the entire cultivable plaque microbiota from a single dog was assessed, and eight (6.7%) unique coaggregation interactions were detected for 120 crosses. Transmission electron microscopy was used to visualize several of the bacteria in isolation and as coaggregates, which revealed surface structures that may be involved in adhesion and coaggregation. The results of this study indicate that the prevalence of coaggregating pairs of dental plaque bacteria in dogs is similar to the prevalence of coaggregating pairs of dental plaque bacteria reported in humans. In addition, genera found in both hosts generally exhibited similar coaggregation reactions; however, autoaggregation was found to be more common among oral bacteria isolated from dogs.     

Aggregative Behavior of Bacteria Isolated from Canine Dental Plaque

Interbacterial adhesion of bacteria isolated from canine dental plaque was assessed by performing a visual coaggregation assay. Using conditions mimicking those likely to be encountered in vivo, the entire cultivable plaque microbiota from a single dog was assessed, and eight (6.7%) unique coaggregation interactions were detected for 120 crosses. Transmission electron microscopy was used to visualize several of the bacteria in isolation and as coaggregates, which revealed surface structures that may be involved in adhesion and coaggregation. The results of this study indicate that the prevalence of coaggregating pairs of dental plaque bacteria in dogs is similar to the prevalence of coaggregating pairs of dental plaque bacteria reported in humans. In addition, genera found in both hosts generally exhibited similar coaggregation reactions; however, autoaggregation was found to be more common among oral bacteria isolated from dogs.     

The relationship between measures of fear of humans and lameness in broiler chicken flocks

In the Welfare Quality® assessment protocol for broilers, the touch test is included to assess the human–animal relationship in the flock. The test is designed to measure the animals’ fear of humans, assuming that broilers will withdraw from the observer if they are fearful. However, many broilers close to slaughter age have impaired walking ability, and the results from the touch test may thus be biased by lameness and poor leg health. As the touch test is currently being used in several countries to assess human–animal relationship in broilers, there is an urgent need to examine this potential relationship for a further validation of the test. In the present study, fear of humans was assessed in 50 randomly selected Norwegian broiler flocks, using the touch test as described in the Welfare Quality® protocol for ty broilers. Leg health was assessed by examining the gait of 150 random birds in each of the flocks, using a six-point gait score scale from 0 to 5. The coefficient for the relationship between touch test score and gait score was 0.034 (P<0.001), indicating that the animals express less fear as assessed by the touch test when the gait scores increase. This implies that the touch test may be confounded by impaired walking ability and therefore might be a suboptimal method of assessing fear of humans and human–animal relationship in broilers. In conclusion, the results from this study suggests that the touch test must be further validated in broilers and perhaps be replaced with a fear test that doesn’t rely on walking ability.     

Morris water maze: procedures for assessing spatial and related forms of learning and memory

The Morris water maze (MWM) is a test of spatial learning for rodents that relies on distal cues to navigate from start locations around the perimeter of an open swimming arena to locate a submerged escape platform. Spatial learning is assessed across repeated trials and reference memory is determined by preference for the platform area when the platform is absent. Reversal and shift trials enhance the detection of spatial impairments. Trial-dependent, latent and discrimination learning can be assessed using modifications of the basic protocol. Search-to-platform area determines the degree of reliance on spatial versus non-spatial strategies. Cued trials determine whether performance factors that are unrelated to place learning are present. Escape from water is relatively immune from activity or body mass differences, making it ideal for many experimental models. The MWM has proven to be a robust and reliable test that is strongly correlated with hippocampal synaptic plasticity and NMDA receptor function. We present protocols for performing variants of the MWM test, from which results can be obtained from individual animals in as few as 6 days.     

Testing for density dependence

Summary The robustness and sensitivity of a test for density dependence in an animal population against departures from the assumed null and alternative model is assessed via simulation. The test is shown to be nonrobust and insensitive to departures from the assumed models.     

Diversity of Ruminococcus strains: a survey of genetic polymorphisms and plant digestibility

Twenty-three strains of Ruminococcus isolated from ruminants were assessed for digestive ability on different plants and purified cellulose. Genetic diversity was assessed by ERIC, REP and 16–23S rDNA spacer polymorphisms. All ruminococci could be typed by ERIC, REP or 16–23S rDNA spacer, but all three typing methods had to be used in concert to differentiate closely related strains. Digestibility of lucerne ( Medicago sativa ), rhodes grass ( Chloris gayana ) and spear grass ( Heteropogon contortus ) were assessed. Dry matter (DM) digestibility was highly correlated (> 0·93) with neutral detergent fibre (NDF) digestibility, but cellulose disc digestibility was a poor indicator of DM and NDF digestibility. Studies demonstrate the wide variation in ability of ruminococci to digest forages, and some recently isolated strains (Y1, LP-9155, AR67, AR71 and AR72) were superior to reference strains (FD-1 and Ra8). Multivariate analysis showed that groupings derived from genotyping data closely resembled those determined by digestibility data. This study indicated that ruminococci are diverse in digestive ability and genotype, and this diversity suggests that there may be highly fibrolytic strains in nature that could be utilized for animal production.     

Removing Masking Factors from Urinary Rhythm Data in Humans

We have previously developed simple models that enable the exogenous and endogenous components of the circadian rhythm of body temperature to be separated. The present paper extends the method to urinary data. First, we have shown that the basic superiority of the two-component model over the one-component model persists when temperature data are converted into a format that is appropriate for urine sampling (that is, a single overnight sample and two-hourly samples during waking). Second, we provide normative endogenous data for urinary sodium, potassium and urate, data obtained from about 80 constant routines. These data are required for the two-component model. Third, we have compared the rate of adjustment to a simulated eastward time-zone transition of 8hr in 8 subjects. This showed that the rate of adjustment assessed by the two-component model was significantly less than that assessed by the one-component model and much closer to that assessed in separate experiments (n=15 subjects) using constant routines. We conclude that the two-component model can be used upon urinary data to give a closer approximation to the shift of the endogenous component, as assessed by constant routines, than can estimates that do not take into account the problem of masking caused by exogenous factors.     

Removing Masking Factors from Urinary Rhythm Data in Humans

We have previously developed simple models that enable the exogenous and endogenous components of the circadian rhythm of body temperature to be separated. The present paper extends the method to urinary data. First, we have shown that the basic superiority of the two-component model over the one-component model persists when temperature data are converted into a format that is appropriate for urine sampling (that is, a single overnight sample and two-hourly samples during waking). Second, we provide normative endogenous data for urinary sodium, potassium and urate, data obtained from about 80 constant routines. These data are required for the two-component model. Third, we have compared the rate of adjustment to a simulated eastward time-zone transition of 8hr in 8 subjects. This showed that the rate of adjustment assessed by the two-component model was significantly less than that assessed by the one-component model and much closer to that assessed in separate experiments (n=15 subjects) using constant routines. We conclude that the two-component model can be used upon urinary data to give a closer approximation to the shift of the endogenous component, as assessed by constant routines, than can estimates that do not take into account the problem of masking caused by exogenous factors.     

ELISA for the routine determination of antitoxic immunity to tetanus

Serum samples from 727 persons with different vaccination histories were assessed for tetanus antitoxin content in an enzyme linked immunosorbent assay (ELISA) and tested for tetanus toxin neutralization activity in mice in order to compare the results obtained by the two methods. Neutralizing antibody activities in sera from individuals previously completely vaccinated correlated well with results obtained by ELISA and the accuracy increased with increasing antitoxin concentration in serum. This correlation was observed in sera from persons vaccinated recently as well as in sera from persons vaccinated many years ago. In sera from persons with an incomplete vaccination history ELISA was found to be an unreliable tool for the prediction of in vivo results. Many of these sera had antitoxin levels by ELISA far above the in vivo values, probably due to the presence of non specific or low avidity antitoxin which is detected in ELISA. The lowest ELISA value reliably predictive of protective antibody activity in serum irrespective of vaccination history was found to be 0.16 IU/ml. It was concluded that ELISA is useful for larger population studies as an initial test, but sera with an antitoxin content below 0.16 IU/ml should also be assessed in a neutralization system.     

Selection and maintenance of androdioecy in Caenorhabditis elegans

Caenorhabditis elegans is an androdioecious nematode composed of selfing hermaphrodites and rare males. A model of male maintenance demonstrates that selfing rates in hermaphrodites cannot be too high or else the frequency of males will be driven down to the rate of spontaneous nondisjunction of the X chromosome. After their outcrossing ability is assessed, males are found to skirt the frequency range in which they would be maintained. When male maintenance is directly assessed by elevating male frequency and observing the frequency change through time, males are gradually eliminated from the population. Males, therefore, appear to reproduce at a rate just below that necessary for them to be maintained. Populations polymorphic for a mutation (fog-2) that effectively changes hermaphrodites into females demonstrate that there is strong selection against dioecy. Factors such as variation in male mating ability and inbreeding depression could potentially lead to the long-term maintenance of males.     

High antigenicity of intraperitoneal insulin infusion via implantable devices: preliminary rat studies.

Intraperitoneal insulin infusion of Genapol stabilized insulin via implantable devices significantly improves diabetes control and hypoglycemia frequency in type 1 diabetes while it increases insulin antibody levels. Causes for this particular antigenicity remain unknown. The role of insulin modifications occurring in the reservoir on the antigenicity observed was assessed by comparing the antigenicities of the insulin coming from the vial or from the pump reservoir. Rats were injected intraperitoneally with insulin sampled either from a vial (group 1) or from a pump reservoir during a refill of a clinical trial (group 2). Two control groups, one without insulin, the second one receiving a mixture of silicone and insulin were also studied. Human insulin antibody levels were assessed by RIA 10 days after 4 weekly immunizations. AIA levels were higher in group 1 compared to group 2 (P = 0.003 for the first experiment, P = 0.04 in the second experiment). The increased antigenicity of the insulin sampled from the implanted pump might be due to the insulin modifications occurring during the storage in the device. Insulin aggregates could be involved in this antigenicity since they are known to be antigenic and their concentration was shown to be related to the amplitude of the antigenic response.     

Prenatal ages and stages-measures and errors

BACKGROUND: The confusing term "gestational age" is generally either not defined or is used for menstrual "age," postovulatory age, or postfertilizational age. The designation (post)menstrual weeks and/or days is very useful in obstetrics but, because prenatal age extends from fertilization to birth, menstrual "age" is a misnomer. The term "stage" has a specific morphological meaning in embryology and should not be used either for ages or for lengths. METHODS: Embryonic age is best assessed, when possible, from the 23 internationally recognized morphological stages. A morphological staging system is not available for the fetal period, and fetal age is assessed mainly from measurements. RESULTS: Among these, the unsatisfactory designation crown-rump length (CRL) should be replaced, in ultrasonic biometry as well as in embryology, by the greatest length (GL), exclusive of the lower limbs. These points are discussed in detail, and justification for the views expressed is provided. CONCLUSIONS: The continuing confusion concerning prenatal age is shown to be unnecessary once the ambiguous and superfluous term "gestational age" is abandoned.     

A biological assay technique for the assessment and comparison of systemic insecticide residues

A technique is described using mortality of aphids on excised leaf samples to assess residual systemic insecticides within the leaf or on its surface. Residues in crops or soil can also be assessed by keeping aphids on leaf samples treated with solvent extracts of contaminated material. Little or no pre-treatment for the removal of potentially interfering materials co-extracted from the crop is required. Comparison of mortalities caused by unknown residues with mortalities caused by known amounts of insecticide enables the technique to be used quantitatively. The sensitivity of the technique varies with the toxicity of the compound being assayed. With most of the insecticides tested, extract solutions down to about 10 ppm may be assessed directly; weaker solutions must first be concentrated.     

Inhibition of release of neurotransmitters from rat dorsal root ganglia by a novel conjugate of a Clostridium botulinum toxin A endopeptidase fragment and Erythrina cristagalli lectin

Clostridial neurotoxins potently and specifically inhibit neurotransmitter release in defined cell types. Here we report that a catalytically active derivative (termed LH(N)/A) of the type A neurotoxin from Clostridium botulinum has been coupled to a lectin obtained from Erythrina cristagalli to form a novel conjugate. This conjugate exhibits an in vitro selectivity for nociceptive afferents compared with the anatomically adjacent spinal neurons, as assessed using in vitro primary neuronal culture systems to measure inhibition of release of neurotransmitters. Chemical conjugates prepared between E. cristagalli lectin and either natively sourced LH(N)/A or recombinant LH(N)/A purified from Escherichia coli are assessed, and equivalence of the recombinant material are demonstrated. Furthermore, the dependence of inhibition of neurotransmitter release on the cleavage of SNAP-25 is demonstrated through the use of an endopeptidase-deficient LH(N)/A conjugate variant. The duration of action of inhibition of neurotransmitter released by the conjugate in vitro is assessed and is comparable with that observed with Clostridium botulinum neurotoxin. Finally, in vivo electrophysiology shows that these in vitro actions have biological relevance in that sensory transmission from nociceptive afferents through the spinal cord is significantly attenuated. These data demonstrate that the potent endopeptidase activity of clostridial neurotoxins can be selectively retargeted to cells of interest and that inhibition of release of neurotransmitters from a neuronal population of therapeutic relevance to the treatment of pain can be achieved.     

Assessing the Environmental Risks of Silver from Clothes in an Urban Area

The environmental risks from the use of silver-containing clothes (“silver clothes”) were assessed for an urban area. First, we evaluated whether the use of silver clothes may cause contamination of wastewater treatment sludge that exceeds certain risk thresholds. Second, we assessed the risk of silver exposure to earthworms from applying the sludge as fertilizer to agricultural land. The most critical parameter was the concentration of silver in silver clothes, for which estimates in the literature vary by more than five orders of magnitude. For concentrations at the high end of that parameter range, there is considerably increased concentration of silver in the sludge, and toxic effects on earthworms even at modest use rates of silver clothes suggest high risk. At the low end, no risks can be expected. The main recommendation from this study is that if silver is used in clothes, the silver concentration must be kept at the lower end of the range applied in this study if risks are to be avoided. This can be done either by design choices of companies, or by regulation. If the function of the applied silver is not maintained at these lower levels, the use of silver clothes should be minimized.     

Assessing declines of North American bumble bees (Bombus spp.) using museum specimens

Bumble bees are an important group of wild pollinators in North America and considerable concern has been expressed over declines in their populations. However, before causes for declines can be assessed, it is essential that the geographical and chronological patterns of decline be discovered. Hitherto a lack of assessment of historical data has hindered our efforts to determine which species are most at risk. Here, the status of 21 North American bumble bee species (Hymenoptera: Apidae) occurring in the eastern nearctic biogeographic region is assessed using a specimen-level database from compiled museum and survey records dating back to the late nineteenth century from various institutional collections. Using a combination of measures, bumble bee declines were assessed over their entire native ranges. We report here that half of the selected fauna is in varying levels of decline (especially Bombus ashtoni, B. fervidus, and B. variabilis), with the remaining species exhibiting stable or increasing trends (e.g., B. bimaculatus, B. impatiens, and B. rufocinctus). Suggestions for prioritizing conservation efforts for this important group of pollinators are given.     

The importance of cytoplasmic male killing elements in natural populations of the two spot ladybird, Adalia bipunctata (Linnaeus) (Goleoptera: Goccinellidae)

Adalia bipunctata , the two spot ladybird, is polymorphic for a cytoplasmically inherited element which produces female-biased sex ratios by effecting the death of male offspring during embryogenesis. The levels of this element were assessed in Cambridge populations. Six out of 82 females tested showed both a female-biased sex ratio and low egg hatch rates consistent with the presence of this element. Population sex ratios were assessed by collecting pupae from the Cambridge area. The population sex ratio was found to be 1.15: 1, female biased, significantly different from 1:1, and consistent with predictions based on a model incorporating the observed level of the sex ratio element in the population.