Diversity of facultatively anaerobic microscopic mycelial fungi in soils

The numbers of microscopic fungi isolated from soil samples after anaerobic incubation varied from tens to several hundreds of CFU per one gram of soil; a total of 30 species was found. This group is composed primarily of mitotic fungi of the ascomycete affinity belonging to the orders Hypocreales (Fusarium solani, F. oxysporum, Fusarium sp., Clonostachys grammicospora, C. rosea. Acremonium sp., Gliocladium penicilloides, Trichoderma aureoviride, T. harzianum, T. polysporum, T. viride. T. koningii, Lecanicillum lecanii, and Tolypocladium inflatum) and Eurotiales (Aspergillus terreus, A. niger, and Paecilomyces lilacimus), as well as to the phylum Zygomycota, to the order Mucorales (Actinomucor elegans, Absidia glauca, Mucor circinelloides, M. hiemalis, M. racemosus, Mucor sp., Rhizopus oryzae, Zygorrhynchus moelleri, Z. heterogamus, and Umbelopsis isabellina) and the order Mortierellales (Mortierella sp.). As much as 10-30% of the total amount of fungal mycelium remains viable for a long time (one month) under anaerobic conditions.     

华东地区根结线虫寄生真菌调查*

通过对5种分离根结线虫寄生真菌的方法的比较,发现通过雌成虫平板分离法和卵平板分离法有较高的成功率,其他三种自幼虫上或土壤中分离的方法很少取得成功。从华东地区104个根结线虫样品中分离得到根结线虫寄生真菌638个菌株, 鉴定为14个属22个种,其中Cylindrocarpon destructans, C.heteronema, Fusarium equiseti, F.lateritium, F.proliferatum, Gliocladium virens, Humicola fuscoatra, Idriella lunata, Trichoderma hamatum, T.harzianum, Verticillium catenulatum, Volutella ciliata 为首次报道在根结线虫上寄生。通过种群分析发现Fusarium solani出现频率最高, F. oxysporum, Paceilomyces lilacinus 和 Acremonium strictum为常见种,这些种在根结线虫上广泛分布。同时还发现卵和成虫寄生真菌有所不同,Gliocladium virens 和Trichoderma harzianum仅在卵上分离到,而Volutella ciliata, Trichoderma hamatum 和Idriella lunata仅在雌成虫分离到,从幼虫上仅分离一次Paecilomyces lilacinus。其它真菌在卵和成虫上均可分离得到,真菌种类在三种根结线虫上和在不同地区有所不同。     

Nests of Marsh harrier (Circus aeruginosus L.) as refuges of potentially phytopathogenic and zoopathogenic fungi

Birds’ nests may be refuges for various species of fungi including that which are potentially phytopathogenic and zoopathogenic. Among the 2449 isolates of fungi obtained from nests of Marsh harriers 96.8% belonged to filamentous fungi. In total, 37 genera were identified from 63 fungi species. Within the mycobiotas of the examined nests populations of fungi which are potentially pathogenic for humans, homoiothermous animals and plants dominated. Among 63 species, 46 (72%) were potentially pathogenic fungi of which 18 species were potentially phytopathogenic and 32 species were pathogenic for homoiothermous animals. Inter alia species of fungi were found in the Marsh harriers nests: Aspergillus fumigatus, Aspergillus flavus, Scopulariopsis brevicaulis, Chrysosporium keratinophilum and Fusarium poae, Fusarium sporotrichioides. In terms of numbers, dominant in Marsh harrier nests were fungi pathogenic to birds, other homoiothermous animals and humans. On that basis it was concluded that Marsh harrier nests are both a source of fungal infections for that species and one of the links in the epidemiological cycle of opportunistic fungi for humans.     

Development of selective media for the isolation and enumeration of Alternaria species from soil and plant debris

A new semi-selective medium, acidified weak potato-dextrose agar (AWPDA) with Mertect (active ingredient: thiabendazole), was developed for the isolation and enumeration of Alternaria species from samples of soil and plant debris. The medium was selected based on growth inhibition tests against Alternaria and several other commonly encountered saprobic fungi utilizing three antifungal agents, Botran (active ingredient: dichloran), Bayleton (active ingredient: triadimefon), and Mertect, and two basal media, acidified potato-dextrose agar (APDA) and AWPDA. Botran inhibited growth of Rhizopus stolonifer moderately, but had little effect on Cladosporium cladosporoides, Fusarium oxysporum, Penicillium chrysogenum, or Trichoderma harzianum. Bayleton inhibited growth of R. stolonifer and C. cladosporoides severely, and inhibited growth of F. oxysporum, P. chrysogenum, and T. harzianum moderately. Mertect inhibited growth of C. cladosporoides, F. oxysporum, P. chrysogenum, and T. harzianum completely, but had little or moderate effect on R. stolonifer. All three antifungal agents inhibited growth of Alternaria species slightly or moderately. The combination of Bayleton and Mertect inhibited growth of all fungi severely. A comparison of recovery rates of Alternaria from soil and plant debris samples on AWPDA with Mertect and weak potato-dextrose agar (WPDA) revealed that Alternaria spp. accounted for 63.6%-81.0% of recovered fungal isolates on AWPDA with Mertect as compared to 0.6%-2.7% of recovered isolates on WPDA. The AWPDA medium with Mertect exhibited superior selective growth of Alternaria species from samples of soil and plant debris, and will be useful in studies where the recovery and enumeration of Alternaria species is necessary.     

Biotic relation between Fusarium oxysporum schlecht. and fungi isolated from the substrate of Stewartia pseudocamellia (max.)

The effect of the fungi community colonizing the substrate of Stewartia plants on the growth of Fusarium oxysporum Schlecht. was investigated. The soil samples from 2 years old Stewartia cuttings were taken for analysis in the second decade of October 2002 and 2003, when the symptoms of disease appeared on Stewartia plant. Fungi were isolated from the substrate using the sand method (Mańka K. 1974). Fusarium oxysporum were isolated from root system of Stewartia pseudocamellia plant. The isolates selected for the investigation proved pathogenic influence on Stewartia in an infection experiment. For estimation of biotic effect of saprobiotic fungi community on Stewartia pathogen F. oxysporum the biotic series method (Mańka K. 1974) was applied. The results showed that species of genera: Penicillium and Trichoderma were the most frequent in the community of fungi in the substrate. Both fungi communities of these fungi could not limit the growth of investigated pathogen F. oxysporum. It showed negative ABSTRACT biotic effect. The strongest antagonistic effect displayed Trichoderma viride and Trichoderma harzianum.     

Biological control of phytopathogenic fungi through lytic action of Trichoderma species

Abstract The antagonistic effect of Trichoderma reesei and Trichoderma harzianum was studied towards a range of phytopathogenic fungi; Alternia solani, Botrytis fabae, Cladosporium cucumerinum, Fusarium oxysporum, Fusarium tricintum . Coculture of the phytopathogens and Trichodema under laboratory conditions clearly showed dominance of the Trichoderma species. In all cases, Trichoderma overgrew the phytopathogens and subsequently developed a conidial lawn over the surface. In these studies the lytic action of the pathogen was clearly apparent and the inhibition of growth appears directly related to its ability to hydrolyze the cell walls of the tested microorganisms rather than through the inhibitory action of antibiotics or toxins. Proteinase, mannanase, laminarinase and chitinase activities were determined in the extracellular fluid of Trichoderma . Glucose and laminaribiose were detected after the in vitro hydrolysis of the cell walls of the phytopathogens. The data imply that the nature of T. reesei and T. harzianum antagonism is based on mycoparasitism (lysis) and appears to optimalize with contact between the mycelia.     

Fungal root endophytes from natural vegetation in Mediterranean environments with special reference to Fusarium spp

Surveys (in 2002 and 2003) were performed for fungal endophytes in roots of 24 plant species growing at 12 sites (coastal and inland soils, both sandy soils and salt marshes) under either water or salt stress in the Alicante province (Southeast Spain). All plant species examined were colonized by endophytic fungi. A total of 1830 fungal isolates were obtained and identified by morphological and molecular [internal transcribed spacer (ITS) and translation elongation factor-1alpha gene region (TEF-1alpha) sequencing] techniques. One hundred and forty-two fungal species were identified, belonging to 57 genera. Sterile mycelia were assigned to 177 morphospecies. Fusarium and Phoma species were the most frequent genera, followed by Aspergillus, Alternaria and Acremonium. Fungal root endophytic communities were influenced by the soil type where their respective host plants grew, but not by location (coastal or inland sites). Fusarium oxysporum, Aspergillus fumigatus and Alternaria chlamydospora contributed most to the differences found between endophytic communities from sandy and saline soils. Host preference was found for three Fusarium species studied. Fusarium oxysporum and Fusarium solani were especially isolated from plants of the family Leguminosae, while Fusarium equiseti showed a preference for Lygeum spartum (Gramineae). In some cases, specificity could be related to intra-specific variability as shown by sequencing of the TEF-1alpha in the genus Fusarium.     

Characterization of the surface hydrophobicity of filamentous fungi

A method for the quantitative analysis of the hydrophobicity of the mycelial mat of filamentous fungi based on contact angle measurements is presented. It was tested for a range of fungi belonging to the classes of basidiomycetes, ascomycetes and deuteromycetes. The measured contact angles of the mycelial mats ranged between hydrophilic (<30 degrees) for the deuteromycetes Fusarium oxysporum Fo47 GUS1 and Trichoderma harzianum P1[pZEGA1] and hydrophobic (>60 degrees) for the ascomycete Cladosporium sp. DSE48.1b and the basidiomycetes Paxillus involutus WSL 37.7, Hebeloma crustiliniforme WSL 6.2, Suillus bovinus WSL 48.1 and Laccaria bicolor WSL 73.1. For some fungi, variations in the hydrophobicity of the mycelium depending on the growth medium, the physiological state and the exposure to water were distinguished.     

从青杨天牛分离的几种致病真菌

从青杨天牛虫尸上分离出枝顶孢霉、球孢白僵菌、金龟子绿僵菌、轮状镰刀菌和尖孢镰刀菌5种病原真菌,其中枝顶孢霉为国内新记录。利用青杨天牛蛹对五种致病真菌进行了生物测定,5种病原菌的致病力顺序为:金龟子绿僵菌>球孢白僵菌>枝顶孢霉>尖孢镰刀菌>轮状镰刀菌。青杨天牛不同虫期对金龟子绿僵菌的易感性顺序为:1龄幼虫>蛹>老熟幼虫。利用金龟子绿僵菌和枝顶孢霉菌液田间防治青杨天牛幼虫,死亡率分别为95.56％及48.72％。     

Physiological and biochemical characterization of Trichoderma harzianum, a biological control agent against soilborne fungal plant pathogens.

Monoconidial cultures of 15 isolates of Trichoderma harzianum were characterized on the basis of 82 morphological, physiological, and biochemical features and 99 isoenzyme bands from seven enzyme systems. The results were subjected to numerical analysis which revealed four distinct groups. Representative sequences of the internal transcribed spacer 1 (ITS 1)-ITS 2 region in the ribosomal DNA gene cluster were compared between groups confirming this distribution. The utility of the groupings generated from the morphological, physiological, and biochemical data was assessed by including an additional environmental isolate in the electrophoretic analysis. The in vitro antibiotic activity of the T. harzianum isolates was assayed against 10 isolates of five different soilborne fungal plant pathogens: Aphanomyces cochlioides, Rhizoctonia solani, Phoma betae, Acremonium cucurbitacearum, and Fusarium oxysporum f. sp. radicis lycopersici. Similarities between levels and specificities of biological activity and the numerical characterization groupings are both discussed in relation to antagonist-specific populations in known and potential biocontrol species.     

Isolation, identification and antifungal susceptibility of lemon pathogenic and non pathogenic fungi

Numerous species of filamentous fungi were isolated from lemon on different plantations in the province of Tucuman, Argentina. The techniques suggested by the Subcommittee of Antifungal Susceptibility of the National Committee for Clinical Laboratory Standards, (USA) were adapted. The effect of three different concentrations of the fungicides imazalil, guazatine, SOPP and thiabendazole on the fungi Fusarium oxysporum, Fusarium moniliforme, Aspergillus niger, Aspergillus flavus, Aspergillus clavatus, Geotrichum candidum, Rhizopus sp, Penicillium sp, Penicillium digitatum and Mucor sp were studied. All the tested strains were resistant to thiabendazole. We assayed a mixture of SOPP (5%), guazatine (350 ppm) and imazalil (100 ppm), which showed a synergic effect on Rhizopus sp. Mucor sp was the only fungus resistant to the four fungicides tested as well as to the above mentioned mixture.     

Biological Control of Protomycopsis phaseoli, the Causal Agent of Leaf Smut of Cowpea

Among the bacteria and fungi associated from the soil where cowpea was grown and tested for antagonism against Protomycopsis phaseoli , Bacillus sp. inhibited the radial growth, Fusarium oxysporum , yeast, Aspergillus fumigatus , Trichoderma harzianum , Trichoderma koningii and Trichoderma sp. reduced radial growth of P. phaseoli . In vitro studies showed that T. harzianum was an active hyperparasite and more effective in reducing the radial growth of P. phaseoli than T. koningii and Trichoderma sp. Spore suspensions of the three Trichoderma spp. prevented the germination of chlamydospores of P. phaseoli . In the field, when applied as spray, Trichoderma sp. was found to be more active in reducing the spread of leaf smut disease than T. harzianum and T. koningii.     

Rhizosphere and rhizoplane fungi of Triticum vulgare cultivated in Saudi Arabia

131 species in addition to 7 varieties which belong to 40 genera were collected from the rhizosphere (36 genera and 120 species + 7 varieties) and rhizoplane (27 genera and 56 species + 2 varieties) of Triticum vulgare. More than 22 species and 3 varieties were not encountered previously from soils or other sources in Saudi Arabia.In the rhizosphere, Aspergillus and Penicillium contributed the broadest spectrum of species (26 species + 5 varieties; and 24 species, respectively). The most frequent fungi were Aspergillus niger, A. clavatus, A. flavus, A. terreus, A. carneus, Penicillium citrinum, P. notatum, P. chrysogenum and Fusarium solani. In the rhizoplane which is a more selective substratum for fungi than the rhizosphere, the picture of dominance became different and the most common fungi were Fusarium solani, F. oxysporum, F. moniliforme, Drechslera spicifera, Cephalosporium roseo-griseum, Stemphylium botryosum, Acremonium strictum and Rhizoctonia solani.     

Use of GUS Transformants of Trichoderma harzianum Isolate T39 (TRICHODEX) for Studying Interactions on Leaf Surfaces

Trichoderma harzianum , isolate T39 (TRICHODEX), was transformed with the GUS ( βglucuronidase) reporter gene to visualize the interaction with Botrytis cinerea and to determine potential mechanisms involved in biocontrol. T39GUS transformants did not appear to penetrate the bean leaf epidermis nor grow into the mesophyll via stomata. No direct penetration or coiling was observed between hyphae and conidia of the T39GUS transformants and of B. cinerea , however, structures of the pathogen were stained blue. Similarly, blue substrate accumulated in various non-transformed fungi such as Alternaria sp., Colletotricum acutatum and the wild-type isolate T39 when co-inoculated on leaves and plates with the T39GUStransgenic strains of T. harzianum and Fusarium oxysporum f. sp. niveum . Therefore, the role of diffusible compounds, specifically from T. harzianum transformants, will need further investigation.     

Antagonistic potentiality of Trichoderma harzianum towards seed-borne fungal pathogens of winter wheat cv. Protiva in vitro and in vivo

The antagonistic effect of Trichoderma harzianum on a range of seed-borne fungal pathogens of wheat (viz. Fusarium graminearum, Bipolaris sorokiniana, Aspergillus spp., and Penicillium spp.) was assessed. The potential of T. harzianum as a biocontrol agent was tested in vitro and under field conditions. Coculture of the pathogens and Trichoderma under laboratory conditions clearly showed dominance of T. harzianum. Under natural conditions, biocontrol effects were also obtained against the test fungi. One month after sowing, field emergence (plant stand) was increased by 15.93% over that obtained with the control treatment, and seedling infection was reduced significantly. Leaf blight severity was decreased from 22 to 11 at the heading stage, 35 to 31 at the flowering stage, and 86 to 74 at the grain filling stage. At harvest, the number of tillers per plant was increased by 50%, the yield was increased by 31.58%, and the 1,000-seed weight was increased by 21%.     

Comparative analysis of Fusarium mitochondrial genomes reveals a highly variable region that encodes an exceptionally large open reading frame

The mitochondrial (mt) genomes of Fusarium verticillioides, Fusarium solani and Fusarium graminearum were annotated and found to be 53.7, 63.0 and 95.7 kb in length, respectively. The genomes encode all genes typically associated with mtDNAs of filamentous fungi yet are considerably larger than the mt genome of F. oxysporum. Size differences are largely due to the number of group I introns. Surprisingly, the genomes contain a highly variable region of 7-9 kb that encodes an exceptionally large, unidentified open reading frame (uORF). The region has the hallmarks of a horizontally transmitted DNA and was likely acquired prior to the divergence of Fusarium species. Two additional uORFs were detected that are also under positive selection. DNA repeats associated with the uORFs suggest that 3' gene duplication may be an adaptive mechanism to modify coding regions or generate new ORFs. The acquisition of these new genes contrasts to the wide-scale size reduction experienced by fungal mt genomes.     

Filamentous fungi found in Atta sexdens rubropilosa colonies after treatment with different toxic bait formulations

Leaf‐cutting ants maintain a symbiotic relationship with basidiomycetous fungi cultivated as food. Here, we profiled the non‐symbiotic filamentous fungi in laboratory nests of Atta sexdens rubropilosa submitted to treatments with different toxic bait formulations (using the insecticide sulfluramide as the active ingredient). After treatment, several filamentous fungi were found in different nest compartments. Culture‐dependent techniques recovered a total of 93 fungal isolates comprising 10 genera, 11 species and four unidentified fungi. The genus Penicillium was prevalent in both control and insecticide treatments. Overall, the majority of fungal isolates obtained in this study are commonly found in soil. Escovopsis spp., the specialized parasite of the ant‐fungus mutualism was only recorded in the fungus gardens of nests submitted to the toxic treatments. Moreover, no correlation was found regarding the presence of fungi in the different nest compartments (chi‐square, P > 0.4182). This study reveals that Escovopsis spp. is not the only fungus to overgrow the fungus garden of debilitated nests, thus adding more evidence on the possible negative impacts of such alien fungi. As suggested by previous studies, fast‐growing filamentous fungi likely overgrow the fungus garden in such conditions.     

Partial silencing of a hydroxy-methylglutaryl-CoA reductase-encoding gene in Trichoderma harzianum CECT 2413 results in a lower level of resistance to lovastatin and lower antifungal activity

In the present article, we describe the cloning and characterization of the Trichoderma harzianum hmgR gene encoding a hydroxymethylglutaryl CoA reductase (HMGR), a key enzyme in the biosynthesis of terpene compounds. In T. harzianum, partial silencing of the hmgR gene gave rise to transformants with a higher level of sensitivity to lovastatin, a competitive inhibitor of the HMGR enzyme. In addition, these hmgR-silenced transformants produced lower levels of ergosterol than the wild-type strain in a minimal medium containing lovastatin. The silenced transformants showed a decrease in hmgR gene expression (up to a 8.4-fold, after 72h of incubation), together with an increase in the expression of erg7 (up to a 15.8-fold, after 72h of incubation), a gene involved in the biosynthesis of triterpenes. Finally, hmgR-silenced transformants showed a reduction in their antifungal activity against the plant-pathogen fungi Rhizoctonia solani and Fusarium oxysporum.     

New Feather-Degrading Filamentous Fungi

Among 106 filamentous fungi isolated from poultry farm waste, 13 species belonging to seven genera (Aspergillus, Acremonium, Alternaria, Beauvaria, Curvularia, Paecilomyces, and Penicillium) were able to grow and produce keratinase in stationary cultures using poultry feather powder as the only substrate. The four most efficient keratinase producers were selected for a comparative study of keratinase production in submerged and stationary conditions. The highest keratinolytic activities were produced after 4-6 days of cultivation in submerged conditions: 53.8 +/- 6.1 U/mL (Alternaria tenuissima), 51.2 +/- 5.4 U/mL (Acremonium hyalinulum), 55.4 +/- 5.2 U/mL (Curvularia brachyspora), and 62.8 +/- 4.8 U/mL (Beauveria bassiana). These novel nondermatophytic keratinolytic fungi have potential use in biotechnological processes involving keratin hydrolysis. The results of this work contribute to show that keratinolytic activity is relatively widespread among common filamentous fungi and may have an important rule in feather decomposition in natural settings.     

Mycoflora and trichothecene toxins of paddy grains from Egypt

120 species and 38 genera were collected from 64 samples of paddy grains on glucose- and cellulose-Czapek's agar at 28 °C. The total count of glycophilic and cellulose-decomposing fungi fluctuated between 216–29760; and 124–11320 colonies/g paddy grains on the two media, respectively.On glucose agar, the most common species were Aspergillus niger, A. flavus, A. sydowi, A. terreus, A. fumigatus, A. ochraceus, Penicillium chrysogenum, P. corylophilum, Fusarium oxysporum, Alternaria alternata, Cladosporium cladosporioides, Trichoderma viride and Mucor racemosus.On cellulose agar with pH 5.5 & 8.0, the most prevalent fungi were Stachybotrys chartarum, S. bisybi, Aspergillus niger, A. flavus, Fusarium oxysporum, Alternaria alternata, Drechslera sativus and Acremonium strictum.Extracts from 64 paddy samples were tested against brine shrimp larvae (Artemis salina). Of these 9 displayed varying degrees of toxicity. Trichothecene-toxins were detected in the extracts of three paddy samples only. Diacetoxyscirpenol and T-2 toxin were detected in two samples and only T-2 toxin in the other.