Diatoms as water quality indicators in the upper reaches of the Great Fish River,Eastern Cape,South Africa

This study focused on the spring-fed upper reaches of the economically important Great Fish River with the aim of determining if diatoms could be used for biomonitoring in semi-arid conditions in southern Africa. Five sites were monitored monthly from 2010 to 2012. Of the 269 diatom taxa belonging to 51 genera identified, the dominant taxa were mostly those considered to be pollution-tolerant: Amphora pediculus, Craticula buderi, Fragilaria biceps, Nitzschia frustulum, Nitzschia paleacea, Planothidium lanceolatum and Rhopalodia gibba. A number of diatom-based numerical indices were used to infer water quality, including the generic diatom index, the specific pollution sensitivity index, the biological diatom index, and percentage pollution-tolerant valves, which forms part of the UK trophic diatom index. All index scores showed the Great Fish River to be impacted, and showed significant correlations of diatom species abundance with pH, NO₃-N, electrical conductivity, NH4-N and CaCO_3. Analysis revealed EC and NO3-N as the main environmental drivers affecting diatom community composition, followed by pH and PO4-P. The percentage of diatom deformities at all sites was high, at 3.5%. Diatom indices showed the river to be impacted by decades of agricultural activity, which was confirmed by chemical water analysis. Thus diatom indices can be used for biomonitoring in semi-arid areas.     

Transformation of thicket to savanna reduces soil quality in the Eastern Cape, South Africa

Xeric succulent thicket in the Eastern Cape, South Africa has been used for farming goats since the early 1900s. This habitat is characterised by a dense cover of the succulent bush Portulacaria afra and by a warm, semi-arid climate with evenly distributed annual rainfall of 250–400 mm. Heavy browsing by goats results in the loss of P. afra and transforms the thicket to an open savanna dominated by annual grasses. Eight fence-line comparisons between thicket and savanna were used to investigate differences in soil quality associated with the vegetation change. Composite soil samples were taken to a depth of 10 cm from 1 ha plots on either side of the fence-line. Associated with the change from thicket to savanna, a significant decrease (paired t-test, P < 0.05) was found in total C (respective means of 5.6 vs. 3.0%), total N (0.33 vs. 0.24%), labile C (2.8 vs. 1.5%), CO₂ flux (1.9 vs. 0.5 µmol m^–2 s^–1), soil respiration in the laboratory (144 vs. 79 ng C kg^–1 s^–1), (NH₄)OAc-extractable Mg (55 vs. 28 mmol_c kg^–1), and laboratory infiltration rate (51 vs. 19 mm h^–1). In the same direction there was a similarly significant increase in modulus of rupture (16 vs. 34 kPa), water-soluble Ca (2.3 vs. 3.4 mmol_c kg^–1) and pH (6.7 vs. 7.7). The soil C content of 5.6% in thicket is surprisingly high in this warm, semi-arid climate and suggests that the dense P. afra bush strongly regulates soil organic matter through microclimate, erosion control, litter quantity and perhaps chemistry. Savanna soils had a greater tendency to crust (as evident in a lower rate of laboratory infiltration and greater modulus of rupture) than thicket soils. This was attributed to their lower organic matter content, which probably reduced aggregate stability. Savannas are likely to be more prone to runoff and erosion not only because of sparser vegetation but also because of a decline in soil quality.     

Secondary succession in Acacia nilotica (L.) savanna in the Hluhluwe Game Reserve,South Africa

Analysis of aerial photographs indicates that woody plant biomass has rapidly increased in Hluhluwe Game Reserve over the last 40 years. Open Acacia nilotica savanna is being replaced by broadleaf species, especially Euclea spp. We were interested in whether this secondary successional shift was due to high numbers of seedlings establishing and growing to maturity under acacias (facilitation) or due to the release of already established, but suppressed individuals (gullivers) of the resprouting broadleaf species. We examined the recruitment patterns and size-class distributions (height, basal diameter) of important species in this savanna.Densities of euclea seedlings (<0.6 cm basal diameter) under Acacia nilotica were low (median of 0 and mean of 0.06 m²) below adult canopies and effectively zero in adjacent interspaces. No differences in numbers of other broadleaf species were found between open sites and under Acacia nilotica sites. Few large eucleas or other broadleaf species occurred under Acacia nilotica. Few Acacia nilotica recruits were found either under adults or in the open whereas Acacia karroo recruits were more common.The overall size class distribution for eucleas was dominated by individuals in the intermediate size class, suggesting that recruitment is not the dominant demographic process. We propose that the escape of intermediate sized eucleas from the fire trap has caused the increase in woody plants.Analysis of a time sequence of aerial photographs shows that invasion occurred rapidly between 1954 and 1975. A common feature for sites where woody plant invasion has taken place, was the presence of barriers to fire (especially roads). We suggest that the recent and rapid increase in woody vegetation is due to a decrease in the frequency of intense fires, rather than the recent absence of megaherbivores which allowed Acacia nilotica establishment. Few intense fires allow suppressed tree or shrub individuals, ('gullivers'), to escape the grass/fire layer and thereby become tall and fire-resistant. This release may explain the rapid rate of invasion by inherently slow growing broad-leaf species.     

Benthic macroinvertebrate assemblage composition and distribution pattern in the upper Mthatha River,Eastern Cape,South Africa

Benthic macroinvertebrates were sampled and environmental variables measured at Langeni Forest and Kambi Valley, two sites of varying degrees of human impact in the upper Mthatha River, South Africa, in 2010–2011. Four species, Simulium adersi Pomeroy, Baetis harrisoni Barnard, Pseudocloeon sp. and Tricorythus sp., occurred at all site sampling units. Specimen counts increased from the rainy months of January to April/May, and higher numbers of individuals occurred at Langeni. Species occurrences per site were directly or indirectly affected by season, substrate and habitat heterogeneity. Canonical correspondence analysis results showed that conductivity, pH, flow, substrate and marginal vegetation were important in determining species distribution patterns. Both rare/habitat-restricted and common/widespread benthic macroinvertebrates identified in this study can be used as indicators for assessing the ecological integrity of the Mthatha River. Habitat management along the river should aim at preserving indigenous vegetation, especially during the summer season when habitat requirements are optimal for growth stages of most benthic macroinvertebrate fauna. The practicality of using species-level surveys on a routine basis can be challenging, given the lack of taxonomic expertise and time constraints. It might be advisable to select a few indicator species and to monitor them as surrogates for the whole community.     

Risk factors of porcine cysticercosis in the Eastern Cape Province, South Africa

There is a high prevalence of Taenia solium taeniosis/cysticercosis in humans and pigs in the Eastern Cape Province (ECP) of South Africa. The objective of this study was to identify risk factors of porcine cysticercosis in select districts of the ECP. Data were collected in 2003 by interviewing 217 pig producers from the area. Blood samples were collected from 261 of their pigs, which were tested using two enzyme-linked immunosorbent assays (ELISA) for the presence of antibodies to cysticercosis. Frequencies of both owner- and pig-level characteristics were determined. For pig-level analysis, all bivariable and multivariable associations were determined using the surveylogistic procedure of the SAS/STAT? software to accommodate for the intraclass correlation that exists for clusters of pigs within one owner and for clusters of owners within a district. All tests for significance were performed at the α?=?0.05 level, and adjusted odds ratios (aOR) and 95% confidence intervals (CI) were determined. Among the respondents, 48% of their households lacked a latrine, 98% slaughtered pigs at home, and 99% indicated that meat inspection services were not available. On bivariable analysis, there was a significant association between porcine infection and district (p?=?0.003), breed (p?=?0.041) and the absence of a latrine (p?=?0.006). On multivariable analysis, the absence of a latrine was the only variable significantly associated with porcine infection (aOR?=?1.89; 95% CI?=?1.07, 3.35) (p?=?0.028). The increased odds of porcine infection with households lacking a latrine contributes to our understanding of the transmission of this parasite in the ECP. Determining and addressing the risk factors for T. solium infection can potentially lower the very high prevalence in humans and pigs in this endemic area.     

Isolation and identification of species of Alicyclobacillus from orchard soil in the Western Cape, South Africa

Alicyclobacilli were isolated from orchard soil collected from an apple and pear farm in Elgin, Western Cape, South Africa. Morphological, biochemical and physiological characteristics of the isolates were used to presumptively classify them as belonging to the genus Alicyclobacillus. Strains were identified to species level by polymerase chain reaction (PCR) with genus-specific primers, and 16S ribosomal RNA (rRNA) gene sequencing. To our knowledge this is the first report on the isolation of Alicyclobacillus acidoterrestris and Alicyclobacillus acidocaldarius from orchard soil. The presence of these organisms in the soil suggests a possible source of contamination for the final fruit juice, concentrate or pulp.     

The effect of largemouth bass Micropterus salmoides on aquatic macro-invertebrate communities in the Wit River,Eastern Cape,South Africa

Fish predation is one of the driving forces of freshwater invertebrate community structures, with alien predators having a pronounced effect. A quantitative assessment of aquatic invertebrates in the Wit River, Sundays River catchment, Eastern Cape, South Africa, was undertaken to assess the impact of the alien fish Micropterus salmoides on their relative abundance and community structure. Communities in the stones-in-current and marginal vegetation biotopes were sampled in the presence and absence of M. salmoides in late summer (February–April) 2008. Results suggest that the presence of M. salmoides does have an impact on indigenous macroinvertebrate fauna and communities. Community structure in the stones-in-current biotopes did not differ significantly between sections of the river with or without fish. However, there was a significant difference in community structure in marginal vegetation between sections of river. In sections with M. salmoides several large or conspicuous taxa (Odonata, Hemiptera and Coleoptera) were significantly reduced (p < 0.05) or even absent, while cryptic/inconspicuous taxa (Trichoptera, Leptoceridae and Mollusca, Physidae) were significantly more abundant (p < 0.05).     

Aspects of population dynamics and feeding by piscivorous birds in the intermittently open Riet River estuary,Eastern Cape,South Africa

Aspects of the population dynamics and feeding activity of piscivorous birds in the small (c. 5 ha) intermittently open Riet River estuary, on the south-eastern coastline of South Africa, were investigated monthly from August 2005 to July 2006. A total of 188 birds of 13 species were recorded, of which six were wading piscivores, four aerial divers and three were pursuit swimmers. The Reed Cormorant (Phalacrocorax africanus) was the numerically dominant species, with a mean of 8.25 (SD ± 7.90) individuals per count. Mean numbers of the Pied Kingfisher (Ceryle rudis) and Giant Kingfisher (Megaceryle maximus) were 3.42 (SD ± 1.20) and 1.17 (SD ± 0.60) individuals per count, respectively. The remaining 10 species revealed mean values <0.5 individuals per count. Breaching events were associated with a change in feeding groups from waders to pursuit feeders, and a decrease in total bird numbers, most likely due to loss of potential littoral zone foraging habitat for waders resulting from reduced water levels. The highest bird numbers were recorded in winter reflecting the migration of large numbers of Reed Cormorant into the system. Monthly food consumption by all piscivorous birds showed large temporal variability, ranging from 26.35 to 140.58 kg per month.     

Patterns of chironomid body-size distribution in an effluent-impacted river in the Eastern Cape,South Africa

Body size is an important determinant of assemblage structure in rivers and streams impacted by elevated concentrations of pollutants such as salts and metals. In the present study, because of the larger surface-area-tovolume ratio of small-bodied chironomid species compared with large-bodied species, it was hypothesised that the relative abundance of the small-bodied species would decrease at the impacted sites by elevated concentrations of total dissolved solids compared with that at the less-impacted control site. The aim of this study was to analyse and compare patterns of chironomid final instar body-size classes at impacted sites with those at the control site. Chironomid larvae were sampled seasonally from August 2009 to September 2012 from one control site and three impacted sites (Sites 2, 3 and 4) in the Swartkops River, Eastern Cape. Site 2 was impacted by diffuse pollution sources, whereas Sites 3 and 4 were impacted by wastewater effluent discharges in addition to diffuse pollution sources. Small-bodied species dominated the assemblage at the control site and declined significantly at the impacted sites, suggesting that chironomid body size responds predictably to deteriorating water quality in the Swartkops River.     

Seasonal abundance, reproduction and hunting of common quail Coturnix coturnix in the Eastern Cape Province, South Africa

This study investigated the potential overlap between breeding and hunting seasons for a population of common quail Coturnix coturnix in the Alexandria District. Seasonal abundance (assessed as the number of birds flushed per unit effort), sex ratios and reproductive condition (based on gonad sizes) of the quail were measured over a period of 16 months, including two hunting seasons. Hunting impacts were assessed in terms of the number of birds killed per unit of hunting effort. Quail exhibited a spring peak in abundance and reproduction, which coincided with the legal hunting season, and bird numbers varied markedly between years. Sex ratio varied, with males dominating early in spring. Hunters killed nearly 60% of the birds flushed, and hunter efficiency was positively correlated with the abundance of quail. These results confirm the dilemma for managers, as quail are currently hunted during the main breeding season and offtakes are high. The development of management strategies is hampered by a lack of understanding of the population biology and ecology, and impacts of hunting. A number of possible hunting strategies are discussed. Since current harvests may not be sustainable, further research is necessary.     

The spawning behaviour of the endangered Eastern Cape rocky, Sandelia bainsii (Anabantidae), in South Africa

Sandelia bainsii is an endangered freshwater fish species which only occurs in short sections of several Eastern Cape river systems in South Africa. The spawning behaviour of S. bainsii is described for the first time. Female S. bainsii remained a light grey colour. Males exhibited distinctive nuptial coloration consisting of an intense black with a white bar on their caudal fin and white windows on the posterior areas of their dorsal and anal fins. There was a darkened post orbital contact organ of ctenoid scales on the reproductively active males. The spawning behaviour was recorded on a video recorder and analyzed during frame by frame replay. Sandelia bainsii are uniparental substrate breeders. The male prepared a spawning area by clearing the substrate with rapid body movements (sweeps). There were a number of preliminary courtship movements, several trial embraces by the male before the actual final embrace. The male underwent a U bend around the female, anchored himself with the contact organ, squeezed the abdominal area of the female with a quick head movement. Courtship and spawning all took place near the substratum. Twenty one separate mating bouts were filmed and analyzed. The duration varied from 1.44 to 5.11 seconds with an average embrace of 3.39 seconds. During the mating clench the female was not normally turned over, as in some anabantoids, but remained upright. The male then guarded the spawning area. Eggs were light yellow, adhesive, demersal and 1.28 mm in diameter with 0.61 mm oil globules. The breeding behaviour of S. bainsii has some similarities with both breeding behaviourial groups, the bubble nesters and the free spawners, within the other African anabantid genus, Ctenopoma. Sandelia bainsii have acquired some temperate specializations with regard to their reproductive style. Free spawning and the release of buoyant eggs is the plesiomorphic anabantid reproductive style. The demersal eggs and male substratum nest sites of S. bainsii are considered apomorphic.     

The Nutrient Status of Mgazana,a Warm Temperate Mangrove Estuary in the Transkei,Eastern Cape,South Africa

Mgazana, a rural southern African mangrove system, was visited monthly from August, 1995 to February, 1997 to collect water samples for nutrient analysis. Surface and bottom samples were taken during spring low tide at seven stations along the estuary and the following physico-chemical parameters measured: river flow, temperature, salinity, oxygen, transparency, ammonia, nitrite, nitrate, phosphate, inorganic carbon (IC), organic carbon (OC), total carbon (TC), soluble nitrogen (SN), particulate nitrogen (PN) and total nitrogen (TN). Using correlation matrix analysis and ANOVA, river flow was found to affect estuarine salinity, transparency and stratification, which influenced nutrient dynamics. Significant seasonal (winter and summer) differences were found for temperature, river flow, nitrate, SN, TN, IC and OC. Most nutrients were significantly correlated with river flow showing gradients down the estuary, indicating allochthonous input from the catchment. OC levels within the estuary were high, probably due to autochthonous mangrove leaf-fall processing by the various in-fauna, but high levels measured at the head of the estuary during high river flow suggested additional allochthonous input from coastal forest litter. Conversely, IC was negatively correlated with river flow suggesting that autochthonous faunal and microbial mineralisation of organic matter occurs within creeks, which is then diluted by increased stream-flow. An N:P ratio of 2.7:1 was obtained for this rural mangrove system, which was low compared with Spartina-based East Cape estuaries subject to urban, industrial and agricultural pollution.     

New distribution record for the Asian tapeworm Bothriocephalus acheilognathi Yamaguti, 1934 in the Eastern Cape province,South Africa

Assuming that the inshore and offshore waters of Lake Victoria are impacted differently by human activities in its catchment, this study investigated the water quality dynamics of the lake. A total of 29 stations were sampled in 2005–2008 for dissolved oxygen (DO), pH, Secchi transparencies, temperature, turbidity, chlorophyll a, NO₃, SRSi, TN and TP. There was a decreasing trend of the measured parameters towards offshore sites, except for Secchi transparency and NO₃, which increased towards the offshore waters. DO concentrations (mean ± SD) varied between 6.97 ± 0.57 mg O₂ l^–1 and 5.80 ± 0.72 mg O₂ l^–1 in the inshore and offshore waters, respectively. Turbidity values were comparatively higher in the inshore (3.73 ± 2.21 NTU) than the offshore waters (2.19 ± 1.81 NTU). Chlorophyll a concentrations varied between 17.36 ± 6.13 µg l^–1 and 8.09 ± 4.38 µg l^–1 in the inshore and offshore waters, respectively. Increases of unsustainable human activities in the lake and its catchments, plus increased degradation of wetlands, are among the causes of the observed water quality changes. In order to be fruitful and sustainable, the management of Lake Victoria and its catchment needs to take an ecosystem approach, and to involve all key stakeholders.     

Analysis of active rotenone concentration during treatment of the Rondegat River,Cape Floristic Region,South Africa

Most endemic freshwater fish species of the Cape Floristic Region are listed as threatened, due mainly to the impacts of invasive alien fish species. The piscicide rotenone has been identified as a potential tool to aid the conservation of indigenous species through the removal of invasive fish. Rotenone was used in the Rondegat River, Cederberg, where smallmouth bass Micropterus dolomieu had extirpated the indigenous fish. An initial rotenone treatment in March 2012 was followed by another in March 2013. Due to concerns following the first treatment about possible build-up of rotenone between treatment stations, the second treatment included monitoring of rotenone concentrations during the treatment. Measured concentrations were consistently below the selected treatment concentration of 37.5 µg l^?1 and dropped to below the tested effective piscicidal concentration of 12.5 µg l^?1 at some sampling points. There was no build-up of rotenone within the treatment zones, but rotenone took longer than expected to clear out of the treatment area. The rotenone was effectively neutralised when the neutralisation station was operational, but was still detectable after neutralisation was terminated.     

Candidates for biocontrol of Macfadyena unguis-cati in South Africa: biology, host ranges and potential impact of Carvalhotingis visenda and Carvalhotingis hollandi under quarantine conditions

Macfadyena unguis-cati (L.) Gentry (Bignoniaceae) was introduced as an ornamental in South Africa, but is fast becoming an important invasive plant in many areas. It is difficult to control the plant chemically and mechanically. The first biocontrol agent, the chrysomelid Charidotis auroguttata (Boheman), has been released. It established at some release sites, but numbers have so far remained low. Additional biocontrol agents were sought to augment C. auroguttata. The potential host ranges of two foliage feeding lace bugs, Carvalhotingis visenda (Drake and Hambleton) and C. hollandi (Drake) (Hemiptera: Tingidae) were evaluated on the basis of nymphal no-choice and adult multi-choice tests involving 23 plant species in 11 families. In no-choice tests, nymphs of both species were able to survive and complete development on M. unguis-cati only, and adults of both species only fed and oviposited on M. unguis-cati during the adult multi-choice tests. Host specificity tests thus confirm that the tingids are highly host specific biocontrol agents, and will not pose risk to any non-target plants in South Africa. A study to determine the potential impact of C. hollandi nymphal feeding on M. unguis-cati showed a significant decrease in the chlorophyll contents of leaves when compared to those of control plants. These studies indicate that, once released, the two lace bug species could contribute significantly to the biological control of M. unguis-cati in South Africa.     

Reproductive potential and seed fate of Sclerocarya birrea subsp. caffra (marula) in the low altitude savannas of South Africa

Even though Sclerocarya birrea subsp. caffra (marula) is a well-studied, keystone tree species with high ecological, commercial and cultural value, significant gaps in our understanding of its reproductive biology exist, particularly the factors limiting fruit and seed production, seed fate and the persistence of the seed bank. Therefore, a detailed quantitative assessment of these factors was conducted at five sites in the low altitude savannas of South Africa. Sites varied with respect to fire regime, large mammals, geology and rainfall. Most sites showed male-biased secondary sex ratios and the minimum fruiting stem diameter ranged between 7.1 and 15.7 cm across sites. Sites with higher levels of disturbance (fire and large browsers) had trees producing fruit at larger minimum stem diameters than sites with lower levels of disturbance. Fruit production was highly variable between individuals, within and between sites, and from year to year. Variability in fruit production across years at one site was greater than the variability across sites in one year, indicating that drivers such as weather, insect herbivory, fire and predator numbers, which vary annually, play a greater role than more constant drivers such as mammalian herbivory, soil types or long-term rainfall. No significant relationship was found between environmental variables (rainfall and temperature) and annual fruit production, indicating a trade-off between vegetative growth and reproduction between years. Since marula fruits are large and heavy, the species relies primarily on mammalian dispersal agents such as the African elephant, which have also been shown to increase the germination rate. However, rodents also appear to play a significant role in seed dispersal. Seed predation rates tend to be highest in areas of low disturbance (no fire and no large browsers). While marula has a small persistent seed bank, recruitment appears to be reliant on the current season's fruit crop. This study provides a detailed quantitative assessment of important reproductive and seed fate vital rates for future population modelling.     

Effect of grazing on vegetation and soil of the heuweltjieveld in the Succulent Karoo,South Africa

We asked how historical and recent grazing intensity affect the patchy landscape of the heuweltjieveld in the semi-arid biodiversity hotspot Succulent Karoo. The study was carried out on a communal farmland 80 km south-west of Springbok, in Namaqualand. Heuweltjies are roughly circular earth mounds that are regularly distributed in this landscape. We sampled plant species and life-form composition, diversity measures, habitat and soil variables in 100 m² plots, placed in three visually distinguishable heuweltjie zones (centre, fringe, and matrix) and distributed across grazing camps with different recent and historic grazing intensities. Differences between heuweltjie zones were assessed with ANOVAs and multiple linear regressions. The effect of past and recent grazing intensity on soil and plant variables was analysed by Generalized Linear Models for each heuweltjie zone separately. The three zones constituted clearly distinguishable units in terms of vegetation and soil characteristics. Soil pH and cover of annual plants increased from matrix to centres, while total vegetation cover, species richness and perennial plant cover decreased in the same direction. Historic (pre-2000) grazing patterns had the strongest effects on fringes, showing the strongest soil and vegetation-related signs of overutilization with increased stocking density. Centres showed signs of overutilization irrespective of the stocking density. The much shorter exposure to recent grazing pattern (post-2000), which was nearly inverse to the historic grazing pattern, showed increase of vegetation cover (centres) and species richness (matrix) with recent grazing intensity. We interpret these effects as still visible responses of the lower grazing intensity in these camps during the historic period. No recovery under recent grazing was observed at any of the zones. We conclude that irrespective of their conducive growing conditions, once transformed to a disturbed state, heuweltjie centres recover slowly, whereas the less impacted soil and vegetation of fringes are more responsive than centres and matrix.