Into the depth of population genetics: pattern of structuring in mesophotic red coral populations

Deep-sea reef-building corals are among the most conspicuous invertebrates inhabiting the hard-bottom habitats worldwide and are particularly susceptible to human threats. The precious red coral (Corallium rubrum, L. 1758) has a wide bathymetric distribution, from shallow up to 800 m depth, and represents a key species in the Mediterranean mesophotic reefs. Several studies have investigated genetic variability in shallow-water red coral populations, while geographic patterns in mesophotic habitats are largely unknown. This study investigated genetic variability of C. rubrum populations dwelling between 55 and 120 m depth, from the Ligurian to the Ionian Sea along about 1500 km of coastline. A total of 18 deep rocky banks were sampled. Colonies were analyzed by means of a set of microsatellite loci and the putative control region of the mitochondrial DNA. Collected data were compared with previous studies. Both types of molecular markers showed high genetic similarity between populations within the northern (Ligurian Sea and Tuscan Archipelago) and the southern (Tyrrhenian and Ionian seas) study areas. Variability in habitat features between the sampling sites did not affect the genetic variability of the populations. Conversely, the patchy distribution of suitable habitats affected populations’ connectivity within and among deep coral banks. Based on these results and due to the emphasis on red coral protection in the Mediterranean Sea by international institutions, red coral could be promoted as a ‘focal species’ to develop management plans for the conservation of deep coralligenous reefs, a reservoir of marine biodiversity.     

Low connectivity and declining genetic variability along a depth gradient in Corallium rubrum populations

This study examines the possible effect of depth on the connectivity and genetic variability in red coral (Corallium rubrum; Octocorallia: Alcyonacea) populations. Patterns of genetic structuring along a depth gradient (from 20 to 70 m) were investigated in two locations of the western Mediterranean coast (northern Catalan and eastern Ligurian Seas) using 10 microsatellite loci. Strong patterns of genetic structuring among the samples were found both within and between the two study sites. In both locations, consistent patterns of reduction in genetic variability along the depth gradient were also observed, suggesting that depth has an important role in determining the patterns of genetic structure in Corallium rubrum. Moreover, a threshold in connectivity was observed among the samples collected across 40–50 m depth, supporting the hypothesis that discrete shallow- and deep-water red coral populations occur. This finding has major implications for management strategies and the conservation of commercially exploited deep red coral populations.     

Coral reefs in the Southern Barents Sea: habitat description and the effects of bottom fishing

Fifteen Lophelia reefs from offshore to coastal areas off northern Norway were studied using video. Health status of the coral habitat (degree of physical impact, % cover of living tissue, colony size), occurrence of trawl marks and lost fishing gear, height of coral colonies and associated fauna were analysed from 44 video-lines. Fishing impact was more frequent on the offshore reefs (36.5% of the observed areas) than those in the coastal reefs (0.6%). The most visible effects of fishing were broken and displaced coral colonies. At some sites only small scattered fragments of live corals were observed, indicating recent impact. The mean colony height of Lophelia and gorgonian corals at impacted sites was around half the size of those at non-impacted sites. Both species richness and abundance was higher at non-impacted coral habitats compared to impacted. The actinarian Protanthea simplex and unidentified brittlestars were the only taxa with higher abundance on impacted compared with non-impacted habitats. The reefs at the offshore location were protected against bottom trawling in 2009 through the establishment of a marine protected area (MPA), but a general ban against trawling on known coral reefs had already been implemented in 1999. In the MPA, signs of regrowth were observed. Most of the observed damage probably occurred over 10 years earlier. Results show that live and non-impacted cold water coral reefs have an important ecological function by enhancing the local biodiversity and fish abundance. Preventing further damage to impacted reefs may lead to full recovery within a few decades.     

Phylogeographic relationships among worldwide populations of the cosmopolitan marine species, the striped gray mullet (Mugil cephalus), investigated by partial cytochrome b gene sequences

Several factors such as geographical barriers, demographic history, biological and ecological traits may contribute to delineate the evolutionary history of a species. The gray mullet, Mugil cephalus, represents an interesting case of a marine species with a coastal ecology and a cosmopolitan distribution. In this study, partial cytochrome b sequences were resolved for 177 M. cephalus specimens sampled from 14 different geographic sites, in order to investigate the genetic divergence and the phylogeographic relationship among populations at a global scale. Demographic parameters were also assessed. Analysis of partial cyt b sequences showed high levels of differentiation among populations from distant geographic areas as most populations harbored private alleles and showed reciprocal monophyly. Both phylogenetic trees and haplotype network indicate the East Australian haplotypes as the closest to the ancestor sequences, which leads to the hypothesis of an Indo-West Pacific center of origin for M. cephalus. The analyses of the molecular variance showed that the genetic variation in M. cephalus is mainly harbored among populations rather than within populations. The high variability indices (h, π) calculated on M. cephalus individuals pooled together and the very low variability indices detected at some geographic sampling sites suggest that gray mullet populations have undergone a long-term reproductive isolation characterized by events of population abundance reductions which may have favored genetic differentiation among populations.     

Community involvement in management for maintaining coral reef resilience and biodiversity in southern Caribbean marine protected areas

Climate change is posing new challenges to conservation because management policies on protected coral reefs are less effective than they were before the current ecosystem degradation. Coral reefs, the most diverse and complex marine ecosystem provide economic services for millions, but are seriously threatened worldwide because reef-building corals are experiencing bleaching phenomena and a steady decline in abundance. The resources of a Marine Protected Area (MPA) in Cartagena, Colombia, are in constant decline, despite a current management plan and on-site staff, urging new conservation actions. A multidisciplinary team gathered to evaluate management effectiveness including biophysical, socioeconomic and governance indicators. Coral cover and fish diversity and abundance were low both inside and outside the MPA, which suggests a limited efficiency of management. Currently, the MPA is a reef with low coral cover and high algae cover as well as large dead coral areas, which are generally signs of highly degraded reef habitats. Live coral cover in the MPA was represented by pioneer coral species such as Agaricia tenuifolia and Porites astreoides. Nonetheless, 35% of the scleractinian species sampled in the area harbored more than one zooxanthellae symbiont, which suggests potential resistance and resilience against coral bleaching. Maintenance of trophic structure and functional diversity is an important endeavor that should be a priority for management in order to allow ecosystem resilience. Social and governance indicators showed low-income levels and few opportunities for communities living in and around the park, low governability, weak communication among stakeholders and with authorities at different levels. As a result, problems related to over exploitation of resources were commonplace in the MPA. These results reflect low adaptive capacity of communities to comply with restrictive conservation rules, showing that establishment of a protected area is a necessary but insufficient condition to guarantee conservation goals. Ignoring the role of local communities only will exacerbate the problems associated with natural resources. Involvement of communities in strategic ecosystems management appears to be a requisite to improve effectiveness of protected areas, and participatory strategies, such as co-management, offer opportunities to improve governability while letting communities adapt to MPA needs.     

Reef-scale failure of coral settlement following typhoon disturbance and macroalgal bloom in Palau,Western Pacific

Factors affecting coral recruitment are critical in influencing the scope and rate of reef recovery after disturbance. In December 2012, super-typhoon Bopha caused immense damage to the eastern reefs of Palau, resulting in near complete loss of coral cover. Within weeks following the typhoon, an ephemeral monospecific bloom of the foliose red macroalga Liagora (up to 40 % cover in February 2013) was recorded at impacted reefs with moderate wave exposure. Conversely, impacted and un-impacted reefs in areas of low wave exposure remained Liagora free. To quantify the effect of this ephemeral macroalgal bloom on coral recruitment, we installed settlement tiles during the major spawning period (March–April 2013) at forereefs with and without Liagora. Reefs (n = 3) with Liagora (13–24 % cover in April) experienced an almost complete failure of settlement, with only two individual corals recorded on settlement tiles (n = 90). This settlement failure was unexpected, as tiles were situated adjacent to, and not within Liagora canopies. In contrast, settlement was significantly higher on reefs that lacked macroalgae (n = 3), ranging from an average of 0.5–2.5 and 2.7–18.9 individuals 25 cm^?2 per top- and under-sided tile, respectively. Reefs with and without Liagora were in close proximity (≤8 km), and hydrodynamic models predicted that larval supply did not limit coral settlement among sites. While some differences in the community composition on the tiles were observed among sites, settlement substrate availability also did not limit coral settlement. Generalised linear mixed effects models indicated that while no settlement substrate explained more than 10 % of the variability in coral settlement, coral cover positively accounted for 26 %, and the cover of Liagora on reefs negatively accounted for more than 50 % of the observed variation. Combined, our results indicate that the typhoon induced ephemeral macroalgal bloom resulted in a reef-scale failure of coral settlement.     

Prevalence of coccidia parasites (Protozoa) in red squirrels ( Sciurus vulgaris): effects of host phenotype and environmental factors

We investigated the relative importance of environmental factors versus host phenotype in determining parasite prevalence in Eurasian red squirrels ( Sciurus vulgaris). One hundred and forty-three fecal samples of 116 different squirrels collected in 2000 and 2001 from five study areas in the Italian Alps, were examined for intestinal protozoans. Two species of Eimeria were present with a medium to high prevalence in both years and in all areas, while two other species were rare, occurring only in some areas and not in all years. Cryptosporidium parvum had a high prevalence in the two study areas of the Western Alps, while in the three areas of the Central Alps it was recorded only once. The prevalence of Eimeria sciurorum and C. parvum fluctuated in parallel with squirrel density, suggesting a possible correlation between the presence of these protozoans and host density. A gender effect on E. sciurorum prevalence at low density could be explained by different space use patterns and social organization of males and females. C. parvum occurred more frequently in young squirrels, suggesting an acquired immunity in adults, but age-related susceptibility was not found for eimerian species. The coccidian community was more similar within than between regions, and study area and year were key parameters in predicting coccidia infection. There was no evidence of competition between coccidian species, but one positive interaction between E. sciurorum and E. andrewsi was observed. Our results suggest that the effects of geographic region, area features, and year effects probably related to fluctuations in host population density, were more important than individual phenotypic host characteristics in structuring the coccidian assemblage and determining levels of parasite prevalence in red squirrel populations.     

Recruitment, early survival and growth of the Mediterranean red coral Corallium rubrum (L 1758), a 4-year study

Recruitment, early survival and growth rates of the precious Mediterranean red coral Corallium rubrum (L 1758) are poorly known. We examined these life history traits by means of artificial long-term settlement plates. Eighteen marble tiles placed off the coast of Leghorn (Tuscany, Italy) at two depths (25 and 35 m) were photographed monthly over the 4-year period from 1998 to 2002. Overall, 864 transparencies were examined to follow the individual life histories of red coral colonies belonging to four successive cohorts. Red coral planulae settled on tiles each year between July and September. Overall, 388 settlers colonized the tiles (244 at 25 m and 144 at 35 m), and their respective densities varied between 12.37±6.1 and 2.75±2.4 dm⁻². Heavy mortality affected these colonies (−24.35±9.12 colonies % y⁻¹), but, after 4 years, the tiles still harboured a persistent population (19±4.97 and 9.75±2.87 colonies dm⁻², respectively, at 25 and 35 m) with positive net recruitment rates. Only in 1999 did the net recruitment rate show a negative trend, although only at the shallower depth. At the same time (late summer 1999), a thermal anomaly affected several epibenthic communities in the Ligurian Sea. After 4 years, the tiles were removed, and the colonies that settled on them were measured. The average annual growth rate of colonies was low (0.62±0.19 mm y⁻¹ in diameter), and a marked reduction in growth with age was observed. Our findings suggest that the populations of this slow-growing long-lived octocoral exhibit a high capacity for colonization and seem to be quite resilient to environmental variability.     

Scale-dependent spatial variability of coral assemblages along the Florida Reef Tract

 Coral reef communities of the western Atlantic have changed over the past two to three decades, but the magnitude and causes of this change remain controversial. Part of the problem is that small-scale patterns observed on individual reefs have been erroneously extrapolated to landscape and geographic scales. Understanding how reef coral assemblages vary through space is an essential prerequisite to devising sampling strategies to track the dynamics of coral reefs through time. In this paper we quantify variation in the cover of hard corals in spur-and-groove habitats (13–19 m depth) at spatial scales spanning five orders of magnitude along the Florida Reef Tract. A videographic sampling program was conducted to estimate variances in coral cover at the following hierarchical levels and corresponding spatial scales: (1) among transects within sites (0.01- to 0.1-km scale), (2) among sites within reefs (0.5- to 2-km scale), (3) among reefs within sectors of the reef tract (10- to 20-km scale), and (4) among sectors of the reef tract (50- to 100-km scale). Coral cover displayed low variability among transects within sites and among sites within reefs. This means that transects from a site adequately represented the variability of the spur-and-groove habitat of the reef as a whole. Variability among reefs within sectors was highly significant, compared with marginally significant variability among sectors. Estimates from an individual reef, therefore, did not adequately characterize nearby reefs, nor did those estimates sufficiently represent variability at the scale of the sector. The structure and composition of coral reef communities is probably determined by the interaction of multiple forcing functions operating on a variety of scales. Hierarchical analyses of coral assemblages from other geographic locations have detected high variability at scales different from those in the present study. A multiscale analysis should, therefore, precede any management decisions regarding large reef systems such as the Florida Reef Tract. Accepted: 19 July 1999     

Controls on chlorophyll-a in nutrient-rich agricultural streams in Illinois, USA

Nitrogen and phosphorus are the primary nutrients that affect water quality in streams in the midwestern USA and high concentrations of these nutrients tend to increase algal biomass. However, how nutrients interact with physical controls in regulating algal biomass is not well known in agricultural streams. Eighteen streams in east-central Illinois (USA) were sampled during June and September 2003 to analyze factors possibly regulating algal biomass. Additionally, two shaded and two non-shaded sites in the Embarras River in east-central Illinois were sampled intensively from June to December 2003. Both sestonic and periphytic chlorophyll-a (chl-a) were analyzed, and periphytic chl-a was assessed on natural substrata and unglazed ceramic tiles. Although high concentrations of nutrients were found in these streams (mean total P = 0.09–0.122 mg l⁻¹ and mean NO₃-N=4.4–8.4 mg l⁻¹), concentrations of sestonic chl-a were low among all sites and both sampling periods (<18 mg m⁻³, median values of 5 and 3 in June and September, respectively). Filamentous algae were an important component of the algal communities in streams with stable substrata. Periphytic chl-a was generally not related to the concentration of N or P in the water column, and in non-shaded streams periphyton appeared at times to be light-limited due to turbid water. Turbidity was found to be an important factor controlling chl-a on ceramic tiles across the 18 sites and for the Embarras River sites; chl-a decreased exponentially in concentration (132–0 mg m⁻²) as turbidity increased from 4 to 39 NTU (r ² = 0.80). In general, the interaction between hydrology and light (turbidity) likely controlled algal biomass in these nutrient-rich, agricultural streams.     

Patterns of environmental variability influence coral‐associated bacterial and algal communities on the Mesoamerican Barrier Reef

A coral's capacity to alter its microbial symbionts may enhance its fitness in the face of climate change. Recent work predicts exposure to high environmental variability may increase coral resilience and adaptability to future climate conditions. However, how this heightened environmental variability impacts coral‐associated microbial communities remains largely unexplored. Here, we examined the bacterial and algal symbionts associated with two coral species of the genus Siderastrea with distinct life history strategies from three reef sites on the Belize Mesoamerican Barrier Reef System with low or high environmental variability. Our results reveal bacterial community structure, as well as alpha‐ and beta‐diversity patterns, vary by host species. Differences in bacterial communities between host species were partially explained by high abundance of Deltaproteobacteria and Rhodospirillales and high bacterial diversity in Siderastrea radians. Our findings also suggest Siderastrea spp. have dynamic core bacterial communities that likely drive differences observed in the entire bacterial community, which may play a critical role in rapid acclimatization to environmental change. Unlike the bacterial community, Symbiodiniaceae composition was only distinct between host species at high thermal variability sites, suggesting that different factors shape bacterial versus algal communities within the coral holobiont. Our findings shed light on how domain‐specific shifts in dynamic microbiomes may allow for unique methods of enhanced host fitness.     

Gene Flow and Genetic Diversity of a Broadcast-Spawning Coral in Northern Peripheral Populations

Recently, reef-building coral populations have been decreasing worldwide due to various disturbances. Population genetic studies are helpful for estimating the genetic connectivity among populations of marine sessile organisms with metapopulation structures such as corals. Moreover, the relationship between latitude and genetic diversity is informative when evaluating the fragility of populations. In this study, using highly variable markers, we examined the population genetics of the broadcast-spawning coral Acropora digitifera at 19 sites in seven regions along the 1,000 km long island chain of Nansei Islands, Japan. This area includes both subtropical and temperate habitats. Thus, the coral populations around the Nansei Islands in Japan are northern peripheral populations that would be subjected to environmental stresses different from those in tropical areas. The existence of high genetic connectivity across this large geographic area was suggested for all sites (F _ST≤0.033) although small but significant genetic differentiation was detected among populations in geographically close sites and regions. In addition, A. digitifera appears to be distributed throughout the Nansei Islands without losing genetic diversity. Therefore, A. digitifera populations in the Nansei Islands may be able to recover relatively rapidly even when high disturbances of coral communities occur locally if populations on other reefs are properly maintained.     

Spatial genetic patterns in lagoonal, reef-slope and island populations of the coral Platygyra daedalea in Kenya and Tanzania

Considering the rapid degradation of coral reefs, it is becoming increasingly important to assess factors such as levels of intraspecific genetic diversity and degree of connectivity between populations and reefs. In this study, five DNA microsatellite markers were used to infer migration patterns and levels of genetic diversity in ten populations of the faviid coral Platygyra daedalea along the coast of East Africa. Populations from reef-slopes and offshore islands had significantly greater genetic diversity, measured as expected heterozygosity and allelic richness than those of inshore lagoonal reefs. A combination of F-statistics and individual assignment tests indicated moderate to high levels of gene flow among lagoonal populations, and less migration between lagoonal sites and the reef-slope and island sites. These results suggest that reef-slope and island reefs could be important reservoirs of genetic diversity for this coral species. Electronic supplementary material The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Genetic structure,allozyme-habitat associations and reproductive fitness in Gypsophila fastigiata (Caryophyllaceae)

Relationships between allozyme differentiation, habitat variation and individual reproductive success were examined in local populations of a perennial herb, Gypsophila fastigiata, on the Baltic island of Öland (Sweden). Relatively little (c. 2%) of the total allozyme diversity in this largely outcrossing species is explained by differentiation between sites tens of kilometres apart. The low level of geographic differentiation suggests that gene flow between sites is, or has recently been, extensive. Yet the component of allozyme diversity due to differentiation between plots (only tens of meters apart) within sites is 3 times larger than the between-site component of diversity. Allozyme variation, especially at the Pgi-2 locus, is significantly associated with habitat variation within sites. Different allele x habitat combinations for the Pgi-2 locus are associated with differences in individual reproductive fitness. Differential selection in different local habitats may thus contribute to the fine-scale structuring of genetic diversity within sites.     

The impact of species-specific traits and phylogenetic relatedness on allozyme diversity inCarex sect.Phyllostachys (Cyperaceae)

Allozyme variation was examined inCarex sect.Phyllostachys (Cyperaceae) to study the effects of species-specific traits and phylogenetic relatedness on genetic structure. In contrast to the findings of similar studies, genetic variability in thePhyllostachys is poorly correlated with geographic range and putative differences in breeding systems (as inferred from morphology). This suggests that other patterns of evolution, colonization, and gene flow characterize the species found in this section. Fixation indices are negative for all populations suggesting that mechanisms such as disassortative mating and selection are maintaining heterozygous excess within populations. Closely related taxa often exhibit different genetic variability statistics. In some instances, however, clades (e.g.C. jamesii andC. juniperorum) display very similar levels of genetic variability despite marked differences in species-specific traits. Recent speciation coupled with the ability to maintain historical levels of variation within populations may be factors accounting for this phenomenon. Contrary to similar studies, species restricted to known glacial refugia have lower genetic diversity than those species that underwent mass migrations in response to deglaciation. Narrowly endemic species were found to partition their genetic diversity within, as opposed to between populations. The opposite trend was evident in wider ranging congeners.     

Microsatellite and mtDNA analysis of the population structure of grey seals (Halichoerus grypus) from three breeding areas in the Baltic Sea

The growing number of grey seals in the Baltic Sea has led to a dramatic increase in interactions between seals and fisheries. The conflict has become such a problem that hunting was introduced in Finland in 1998 and the Swedish Environment Protection Agency recommended a cull of grey seals starting in 2001. Culling has been implemented despite the lack of data on population structure. Low levels of migration between regions would mean that intensive culling in specific geographic areas would have disproportionate effects on local population structure and genetic diversity. We used eight microsatellite loci and a 489 bp section of the mtDNA control region to examine the genetic variability and differentiation between three breeding sites in the Baltic Sea and two in the UK. We found high levels of genetic variability in all sampled Baltic groups for both the microsatellites and the control region. There were highly significant differences in microsatellite allele frequencies between all three Baltic breeding sites and between the Baltic sites and the UK sites. However, there were no significant differences in mtDNA control region haplotypes between the Baltic sites. This genetic substructure of the Baltic grey seal populations should be taken into consideration when managing the seal population to prevent the hunting regime from having an adverse effect on genetic diversity by setting hunting quotas separately for the different subpopulations. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Coral disease dynamics at a subtropical location, Solitary Islands Marine Park, eastern Australia

Recent observations suggest that a spreading disease is increasingly contributing to hard coral mortality in the Solitary Islands Marine Park, NSW, Australia. This study determined coral disease prevalence and rate-of-spread through individual affected colonies and investigated the effect this epizootic had on coral populations at sites adjacent to South West Solitary Island. Quantitative data were collected between 2002 and 2004 using photographic and video methods, and visual census along radial arc belt transects. Disease similar to the reported white syndrome and white plague was apparent, spreading through hard coral species from the genera Turbinaria, Acropora, Goniastrea, Pocillopora, Stylophora and Porites. Coral disease prevalence varied between survey dates with mean prevalence increasing from 8.55% during March 2003 to 13.58% in June and declining to 7.75% in September and 6.21% during March 2004. There was a significant difference in mean prevalence between the affected species (p<0.001) and an overall difference between survey dates (p=0.001). Additionally, the rate-of-spread of coral disease through coral colonies determined using repeated, seasonal, still photographs followed similar patterns, with disease progression differing between affected species (p=0.004), and between survey dates (p<0.001). Analysis of the video-transects indicated significant difference in disease prevalence over larger spatial scales (100s of m). However, disease frequency did not vary significantly between 2002 and 2003.     

Ubiquitous genetic diversity in ISSR markers between and within populations of the asexually producing moss <Emphasis Type="Italic">Pleurochaete squarrosa</Emphasis>

This paper provides an analysis of genetic variability in local populations of the clonal moss Pleurochaete squarrosa, a Mediterranean moss typical of post-fire recovery, and characterised by asexual reproduction. ISSR (Internal Simple Sequence Repeats) primers and trnL_UAA (intron of plastid gene for Leu tRNA) length polymorphism were employed to evaluate genetic structure in five southern Italy populations of this moss. Both molecular tools highlight high values of genetic diversity with geographic structure of sampled populations and a low gene flow among the investigated sites. Gene diversity is significant at every hierarchical level of sampling, and generally increases from lower to higher hierarchical levels. Among other factors, the ubiquitous genetic variability detected in P. squarrosa can be related to continuous, occasionally massive, short-range recruitment of propagules, and to the high degree of intermingling, both favoured by the modality of vegetative reproduction and growth occurring in the species.     

Spatio-temporal heterogeneity in coral recruitment around Moorea, French Polynesia: Implications for population maintenance

The spatio-temporal variability of scleractinian coral recruitment was investigated from December 2000 to December 2003 around Moorea Island (French Polynesia). Nine stations, each with 20 terracotta tiles, were placed on the outer reef slope, at 3 sites (Vaipahu, Tiahura, Haapiti), and at 3 depths (6, 12 and 18 m). The relative contribution of the different families of recruits (Pocilloporidae: 60.4%, Poritidae: 18.8%, Acroporidae: 11.2%) and the very low recruitment rates (maximum: 35 recruits per tile, higher mean densities of 10.8 recruits per tile, average 40.77 recruits m^− 2 year^− 1) recorded at Moorea are similar to recruitment patterns recorded on sub-tropical reefs. Over the duration of the study period, we detected a marked seasonal variability in recruitment rates, with the peak recruitment for all families recorded in December-March periods, corresponding to periods of warmest SSTs. However, recruits of Acroporidae were also relatively abundant in the September-December period in some years, which coincides with the known spawning periods of some Acropora species. Total recruitment rate decreased after the first year of the survey, and was probably the result of the bleaching event that occurred in early 2002, which may have reduced fecundity of some coral populations. A lower proportion of recruits were found on the upper surface of the tiles (14.5%), compared to the lower surfaces (57.1%) and sides (28.4%), which is likely the result of intense grazing by herbivorous fish and urchins. We detected a patchy distribution at the station scale, and a significant variation in recruitment patterns among depths and sites. Pocilloporidae recruited more abundantly at 6 and 18 m, whereas Poritidae were generally more abundant at 12 m depth. In contrast, Acroporidae showed no clear depth pattern during the study period. Recruitment was lowest at the most exposed site (Haapiti), especially for Acroporidae, and probably reflects lower settlement rates and/or higher early post-settlement mortality caused by frequent high swells and their associated strong currents. These distinctive characteristics in recruitment patterns of the 3 dominant families of recruits underline the important role of life history strategies in understanding the spatial patterns, dynamics and maintenance processes of coral populations. The relatively low coral recruitment rates recorded from this study indicate that recovery from severe or frequent perturbations will be slow.     

Coral recruitment: patterns and processes determining the dynamics of coral populations

Coral recruitment describes the addition of new individuals to populations, and it is one of the most fundamental demographic processes contributing to population size. As many coral reefs around the world have experienced large declines in coral cover and abundance, there has been great interest in understanding the factors causing coral recruitment to vary and the conditions under which it can support community resilience. While progress in these areas is being facilitated by technological and scientific advances, one of the best tools to quantify recruitment remains the humble settlement tile, variants of which have been in use for over a century. Here I review the biology and ecology of coral recruits and the recruitment process, largely as resolved through the use of settlement tiles, by: (i) defining how the terms ‘recruit’ and ‘recruitment’ have been used, and explaining why loose terminology has impeded scientific advancement; (ii) describing how coral recruitment is measured and why settlement tiles have value for this purpose; (iii) summarizing previous efforts to review quantitative analyses of coral recruitment; (iv) describing advances from hypothesis-driven studies in determining how refuges, seawater flow, and grazers can modulate coral recruitment; (v) reviewing the biology of small corals (i.e. recruits) to understand better how they respond to environmental conditions; and (vi) updating a quantitative compilation of coral recruitment studies extending from 1974 to present, thus revealing long-term global declines in density of recruits, juxtaposed with apparent resilience to coral bleaching. Finally, I review future directions in the study of coral recruitment, and highlight the need to expand studies to deliver taxonomic resolution, and explain why time series of settlement tile deployments are likely to remain pivotal in quantifying coral recruitment.