Decapod Crustacea from the International Indian Ocean Expedition The species of Thalassocaris (Caridea) and their larvae

Plankton collections from the Indian Ocean contain adults and larvae of three species of Thalassocaris: T. lucida (Dana), T. crinita (Dana) and T. obscura sp.n. The new species was previously confused with T. crinita by Borradaile and with T. lucida by Kemp.
Larvae of Thalassocaris are described for the first time. In each species there are 10–13 zoeal stages. The cephalothorax is very broad and shallow, the maxilla has only one coxal endite, and exopods develop on legs 1–4.
T. crinita is a shallow-water species with a wide distribution in the Indian Ocean and western Pacific. T. lucida and T. obscura are open ocean species. T. lucida is most common in the eastern Indian Ocean (and probably in the western Pacific) and is not recorded from the Arabian Sea. T. obscura is most common in the Arabian Sea and is not recorded from the south-eastern Indian Ocean or from the Pacific.
Larval characters do not support the inclusion of Thalassocaris in the Pandalidae. Recognition of the family Thalassocarididae, comprising the genera Thalassocaris and Chlorosocoides, is advocated.     

Shallow mtDNA coalescence in Atlantic pygmy angelfishes (genus Centropyge) indicates a recent invasion from the Indian Ocean

Pygmy angelfishes (genus Centropyge) are widespread and species-rich in the Indo-Pacific, but only three species are recognized in the Atlantic: Centropyge resplendens on the Mid-Atlantic Ridge, Centropyge argi in the Caribbean, and Centropyge aurantonotus in Brazil and the southern Caribbean. Atlantic species are distinguished only by color patterns and are very similar to Centropyge acanthops (Cac) in the western Indian Ocean, raising the possibility that pygmy angelfish recently invaded the Atlantic Ocean via southern Africa. To test this zoogeographic hypothesis, we compared a 454-bp segment of the mitochondrial DNA (mtDNA) control region among pygmy angelfishes of the subgenus Xiphypops, which includes the three Atlantic species, the Indian Ocean species, and an Indo-Pacific species [Centropyge fisheri (Cfi)]. The Indian Ocean species Cac is closest to the Atlantic species (d = 0.059) relative to Cfi (d = 0.077). The mtDNA genealogy indicates a colonization pathway from the Indian Ocean directly to the West Atlantic, followed by at least two waves of dispersal to the Mid-Atlantic Ridge. The gene tree for the three Atlantic species is polyphyletic, raising questions about taxonomic assignments based on color pattern. Mismatch distributions place Atlantic founder events and population expansions at about 250,000-500,000 years ago. Estimates of effective female population sizes from mismatch and coalescence analyses are consistent with founder events by tens of individuals in the western Atlantic, followed by expansions to several million individuals.     

Biodiversity patterns in Indian Ocean corals, and effects of taxonomic error in data

Corals from 26 sites in the Indian Ocean, from numerous taxonomic sources, are analysed for distribution patterns after applying a consistent synonymy. The data set contains double the amount of distribution information used previously. Cluster analysis shows several contiguous regional groupings within this ocean, and no geographically dispersed groupings exist. Between-site species similarity correlates negatively with distance between sites. Coral species diversity and genus diversity plotted with latitude and longitude confirm that a band of high diversity stretches across the entire Indian Ocean, but that in this Ocean, unlike the Pacific and greater Caribbean area, there is no clear gradient with latitude at least up to the latitudinal limits of coral growth. About half the species are widespread throughout the Indian Ocean. Species frequency/distribution curves and cumulative frequency curves show that 150 species occur at only 2–4 sites. Multi-dimensional scaling (MDS) analysis using only these species confirms that they are important in forming sub-regional groupings which are superimposed on a general Indian Ocean homogeneity.The perennial problem of error in taxonomic data sets is examined. Increasing taxonomic error is introduced into the data using random methods. It is found that about 25% more error can be added to this data set before the relationship between similarity coefficient and geographical distance between pairs of sites is lost. Measures extracted from the clustering procedure using the original data and the data sets with added taxonomic error, show a sharp loss in cluster formation after addition of about 10 or 20% more error.     

Pinnipeds or sirenians at western Indian Ocean Islands?

Records of pinnipeds and sirenians are rare in the western Indian Ocean away from continental coasts. In the case of pinnipeds there are apparently no records at all in this area, except for occasional stray Elephant seals Mirounga leonina as far north as Mauritius and Rodriguez, and a single record of an undetermined species in the southern Maldive Islands: the Indian Ocean now lacks any counterpart of the Monk seals of the Caribbean and the Pacific (King, 1956, 1964). In the case of sirenians, Dugongs are widely distributed round the continental coasts of the Indian Ocean, including Madagascar, the Comoros, and Ceylon, but there is much less information concerning them on more remote Indian Ocean islands. This paper draws attention to hitherto unnoticed reports of animals which could be either pinnipeds or sirenians made by 18th and early 19th century navigators, and reviews some of the published evidence for the existence of these animals in the 17th and 18th centuries in the Mascarene Islands. It is shown that many of the reef islands of the tropical western Indian Ocean were formerly inhabited by seals, of undetermined species and now extinct, and that some of the early references to Dugongs in fact concerned seals.     

The evolutionary origin of Indian Ocean tortoises (Dipsochelys)

Today, the only surviving wild population of giant tortoises in the Indian Ocean occurs on the island of Aldabra. However, giant tortoises once inhabited islands throughout the western Indian Ocean. Madagascar, Africa, and India have all been suggested as possible sources of colonization for these islands. To address the origin of Indian Ocean tortoises (Dipsochelys, formerly Geochelone gigantea), we sequenced the 12S, 16S, and cyt b genes of the mitochondrial DNA. Our phylogenetic analysis shows Dipsochelys to be embedded within the Malagasy lineage, providing evidence that Indian Ocean giant tortoises are derived from a common Malagasy ancestor. This result points to Madagascar as the source of colonization for western Indian Ocean islands by giant tortoises. Tortoises are known to survive long oceanic voyages by floating with ocean currents, and thus, currents flowing northward towards the Aldabra archipelago from the east coast of Madagascar would have provided means for the colonization of western Indian Ocean islands. Additionally, we found an accelerated rate of sequence evolution in the two Malagasy Pyxis species examined. This finding supports previous theories that shorter generation time and smaller body size are related to an increase in mitochondrial DNA substitution rate in vertebrates.     

Molecular phylogeography reveals island colonization history and diversification of western Indian Ocean sunbirds (Nectarinia: Nectariniidae)

We constructed a phylogenetic hypothesis for western Indian Ocean sunbirds (Nectarinia) and used this to investigate the geographic pattern of their diversification among the islands of the Indian Ocean. A total of 1309 bp of mitochondrial sequence data was collected from the island sunbird taxa of the western Indian Ocean region, combined with sequence data from a selection of continental (African and Asian) sunbirds. Topological and branch length information combined with estimated divergence times are used to present hypotheses for the direction and sequence of colonization events in relation to the geological history of the Indian Ocean region. Indian Ocean sunbirds fall into two well-supported clades, consistent with two independent colonizations from Africa within the last 3.9 million years. The first clade contains island populations representing the species Nectarinia notata, while the second includes Nectarinia souimanga, Nectarinia humbloti, Nectarinia dussumieri, and Nectarinia coquereli. With respect to the latter clade, application of Bremer's [Syst. Biol. 41 (1992) 436] ancestral areas method permits us to posit the Comoros archipelago as the point of initial colonization in the Indian Ocean. The subsequent expansion of the souimanga clade across its Indian Ocean range occurred rapidly, with descendants of this early expansion remaining on the Comoros and granitic Seychelles. The data suggest that a more recent expansion from Anjouan in the Comoros group led to the colonization of Madagascar by sunbirds representing the souimanga clade. In concordance with the very young geological age of the Aldabra group, the sunbirds of this archipelago have diverged little from the Madagascar population; this is attributed to colonization of the Aldabra archipelago in recent times, in one or possibly two or more waves originating from Madagascar. The overall pattern of sunbird radiation across Indian Ocean islands indicates that these birds disperse across ocean barriers with relative ease, but that their subsequent evolutionary success probably depends on a variety of factors including prior island occupation by competing species.     

A review of flying fishes of the subgenus Hirundichthys (genus Hirundichthys, exocoetidae). 1. Oceanic species: H. speculiger, H. indicus sp. nova

A systematic revision of flying fishes of the subgenus Hirundichthys s.str was carried out based on a study of meristic and morphometric traits and characteristics of pigmentation of fishes from the local populations of species belonging to the subgenus. It is found out that the subgenus includes four species: oceanic H. speculiger from the Atlantic, Pacific and Indian Oceans, oceanic H. indicus sp.n. from the waters of the Indian Ocean, nerito-oceanic H. oxycephalus from the waters of the Indo-West Pacific and nerito-oceanic H. affinis from the Atlantic Ocean. The first part of the review focuses on two oceanic species with a large “mirror” on the pectoral fins: H. speculiger and H. indicus. A comparison of local populations showed that the species H. indicus is polytypic and consists of two subspecies. One of the subspecies—nominative H. indicus indicus—is distributed in the western and the central parts of the Indian Ocean and the other—H. indicus orientalis ssp.n.—in the Eastern Indian Ocean. Maps showing a geographical distribution of the species and the subspecies in the World Ocean are drawn up.     

Helminthic fauna of commercial fishes from the Saya-de-Malya bank (Indian Ocean)

The data on infestation of 8 species of commercial fishes from Saya-de-Malya bank (the Indian Ocean) are presented. 43 helminth species were identified: 10 Monogenea species, 18 trematode, 7 cestode and 8 nematode species. The mature worms are observed to be related to a certain host, whereas the nematode and cestode larvae have wide specificity. High infestation degree by Anisakis larvae is found in fishes, especially in Carangidae. At the bank area fishes are found to be free from Acanthocephala while those Acanthocephala are found in fishes from other areas of the Indian Ocean which may be attributed to the specific diet at the Saya-de-Malya bank. On the whole the helminth fauna of fishes examined at the Saya-de-Malya bank does not demonstrate the endemic pattern. The most specific helminth species were found in some fish species.     

Multi‐locus sequence data reveal a new species of coral reef goby (Teleostei: Gobiidae: Eviota), and evidence of Pliocene vicariance across the Coral Triangle

Here, multi‐locus sequence data are coupled with observations of live colouration to recognize a new species, Eviota punyit from the Coral Triangle, Indian Ocean and Red Sea. Relaxed molecular clock divergence time estimation indicates a Pliocene origin for the new species, and the current distribution of the new species and its sister species Eviota sebreei supports a scenario of vicariance across the Indo‐Pacific Barrier, followed by subsequent range expansion and overlap in the Coral Triangle. These results are consistent with the ‘centre of overlap’ hypothesis, which states that the increased diversity in the Coral Triangle is due in part to the overlapping ranges of Indian Ocean and Pacific Ocean faunas. These findings are discussed in the context of other geminate pairs of coral reef fishes separated by the Indo‐Pacific Barrier.     

A report on some pontoniinid shrimps collected from the Seychelle Islands by the F.R.V. Manihine, 1972, with a review of the Seychelles pontoniinid shrimp fauna

A collection of pontoniinid shrimps, principally from the Islands of Mahé and Praslin, in the western Indian Ocean, is described. Twenty-four species were collected, including two new species, Periclimenes difficilis and Periclimenaeus manihinei. Twenty-two species are considered to be commensals and the hosts of many are identified. The early juvenile stages of several species were collected and are described for the first time. The incidence of regeneration in the second pereiopods is studied in detail in Coralliocaris graminea. The pontoniinid shrimp fauna of the Seychelle Islands is reveiwed and its geographic distribution summarized. Two of the species reported are new records for the Indian Ocean and eight are newly added to the Seychelles fauna.     

Widespread gene flow between oceans in a pelagic seabird species complex

Global‐scale gene flow is an important concern in conservation biology as it has the potential to either increase or decrease genetic diversity in species and populations. Although many studies focus on the gene flow between different populations of a single species, the potential for gene flow and introgression between species is understudied, particularly in seabirds. The only well‐studied example of a mixed‐species, hybridizing population of petrels exists on Round Island, in the Indian Ocean. Previous research assumed that Round Island represents a point of secondary contact between Atlantic (Pterodroma arminjoniana) and Pacific species (Pterodroma neglecta and Pterodroma heraldica). This study uses microsatellite genotyping and tracking data to address the possibility of between‐species hybridization occurring outside the Indian Ocean. Dispersal and gene flow spanning three oceans were demonstrated between the species in this complex. Analysis of migration rates estimated using bayesass revealed unidirectional movement of petrels from the Atlantic and Pacific into the Indian Ocean. Conversely, structure analysis revealed gene flow between species of the Atlantic and Pacific oceans, with potential three‐way hybrids occurring outside the Indian Ocean. Additionally, geolocation tracking of Round Island petrels revealed two individuals travelling to the Atlantic and Pacific. These results suggest that interspecific hybrids in Pterodroma petrels are more common than was previously assumed. This study is the first of its kind to investigate gene flow between populations of closely related Procellariiform species on a global scale, demonstrating the need for consideration of widespread migration and hybridization in the conservation of threatened seabirds.     

Distinct patterns of hybridization across a suture zone in a coral reef fish (Dascyllus trimaculatus)

Hybrid zones are natural laboratories for investigating the dynamics of gene flow, reproductive isolation, and speciation. A predominant marine hybrid (or suture) zone encompasses Christmas Island (CHR) and Cocos (Keeling) Islands (CKE), where 15 different instances of interbreeding between closely related species from Indian and Pacific Oceans have been documented. Here, we report a case of hybridization between genetically differentiated Pacific and Indian Ocean lineages of the three‐spot dascyllus, Dascyllus trimaculatus (Rüppell, 1829). Field observations indicate there are subtle color differences between Pacific and Indian Ocean lineages. Most importantly, population densities of color morphs and genetic analyses (mitochondrial DNA and SNPs obtained via RADSeq) suggest that the pattern of hybridization within the suture zone is not homogeneous. At CHR, both color morphs were present, mitochondrial haplotypes of both lineages were observed, and SNP analyses revealed both pure and hybrid genotypes. Meanwhile, in CKE, the Indian Ocean color morphs were prevalent, only Indian Ocean mitochondrial haplotypes were observed, and SNP analysis showed hybrid individuals with a large proportion (~80%) of their genotypes assigning to the Indian Ocean lineage. We conclude that CHR populations are currently receiving an influx of individuals from both ocean basins, with a greater influence from the Pacific Ocean. In contrast, geographically isolated CKE populations appear to be self‐recruiting and with more influx of individuals from the Indian Ocean. Our research highlights how patterns of hybridization can be different at scales of hundreds of kilometers, due to geographic isolation and the history of interbreeding between lineages.     

Molecular phylogeny of the spiny lobster genus Palinurus (Decapoda: Palinuridae) with hypotheses on speciation in the NE Atlantic/Mediterranean and SW Indian Ocean

Sequence data derived from the mitochondrial DNA 16S rRNA and COI genes were used to determine the phylogenetic relationships among six Palinurus spiny lobster species. Three species (P. charlestoni, P. elephas, and P. mauritanicus) occur in the northeastern Atlantic/Mediterranean, and the others (P. barbarae, P. delagoae and P. gilchristi) inhabit the southwestern Indian Ocean. Parsimony and model based phylogenetics strongly supported the monophyly of the genus. A combined parsimony analysis based on 1001bp and 274 parsimony informative characters recovered the most resolved phylogeny with >70% bootstrap support for associations among species. The Atlantic P. charlestoni consistently clusters nested within the Indian Ocean clade, and the mtDNA sequence divergence between the two most distant species is 8.24%. If the northward collision of Africa with Eurasia in the Miocene caused the final physical separation between the Atlantic and Indian Ocean taxa, then the Palinurus mtDNA (COI and 16S combined) evolved no faster than 0.18% (lower bound) to 0.36% (upper bound) per lineage per million years. The six extant species occur in the pathways of the North Atlantic and South Indian Ocean gyres, and hypotheses on their radiation are developed relative to the strengthening of boundary currents in the Miocene and life history traits congruent with survival in strong ocean currents.     

A mitochondrial phylogeography of Brachidontes variabilis (Bivalvia: Mytilidae) reveals three cryptic species

This study examined genetic variation across the range of Brachidontes variabilis to produce a molecular phylogeography. Neighbour joining (NJ), minimum evolution (ME) and maximum parsimony (MP) trees based on partial mitochondrial DNA sequences of 16S-rDNA and cytochrome oxidase (COI) genes revealed three monophyletic clades: (1) Brachidontes pharaonis s.l. from the Mediterranean Sea and the Red Sea; (2) B. variabilis from the Indian Ocean; (3) B. variabilis from the western Pacific Ocean. Although the three clades have never been differentiated by malacologists employing conventional morphological keys, they should be ascribed to the taxonomic rank of species. The nucleotide divergences between Brachidontes lineages (between 10.3% and 23.2%) were substantially higher than the divergence between congeneric Mytilus species (2.3–6.7%) and corresponded to interspecific divergences found in other bivalvia, indicating that they should be considered three different species. Analysis of the 16S-rDNA sequences revealed heteroplasmy, indicating dual uniparental inheritance (DUI) of mtDNA in the species of Brachidontes collected in the Indian Ocean, but not in the species in the Pacific nor in the species in the Red Sea and the Mediterranean Sea. When we employed the conventional estimate of the rate of mitochondrial sequence divergence (2% per million years), the divergence times for the three monophyletic lineages were 6–11 Myr for the Indian Ocean and Pacific Ocean Brachidontes sp. and 6.5–9 Myr for the Red Sea and Indian Ocean Brachidontes sp . Thus, these species diverged from one another during the Miocene (23.8–5.3 Myr). We infer that a common ancestor of the three Brachidontes species probably had an Indo-Pacific distribution and that vicariance events, linked to Pleistocene glaciations first and then to the opening of the Red Sea, produced three monophyletic lineages.     

The Drosophilidae (Diptera) of the Scattered Islands,with the description of a novel association with Leptadenia madagascariensis Decne. (Apocynaceae)

Thirteen drosophilid species belonging to seven genera and two subfamilies are reported from three coral islands (namely Europa, Juan de Nova and Glorioso) that belong to the Scattered Islands in the Indian Ocean. Five species are cosmopolitan and five are African. Three are endemic to the insular Western Indian Ocean, including a presumably new Scaptodrosophila species. On the island of Juan de Nova, most captured flies had pollinia attached to the bases of their proboscis. DNA analysis using the rbcl gene revealed that these pollinia belong to the genus Leptadenia (Apocynaceae), of which a single species L. madagascariensis, endemic in Madagascar and Comoros, is present in this island. This is the first reported association between this plant and drosophilids.     

A northern rockhopper penguin unveils dispersion pathways in the Southern Ocean

We report the first record of a northern rockhopper penguin Eudyptes moseleyi on the Kerguelen Islands, Southern Indian Ocean. The penguin must have crossed the subtropical convergence to reach the island. This species was recently proved to be genetically different from the subantarctic eastern rockhopper penguin E. filholi that normally breeds on the Kerguelen Islands. The sequencing of a part of the mitochondrial control region shows that this bird may come from the population of Gough Island, 6,000 km away, in the south Atlantic Ocean. This finding confirms that the genetic isolation between these two penguin species is complete, although some individuals may sporadically disperse between the breeding sites. This first direct observation of a disperser from the Atlantic to the Indian Ocean also adds further support to a biogeographic dispersion pattern already suggested by phylogeographic patterns in other species from the Southern Ocean.     

Phylogeography of the Crown-of-Thorns Starfish in the Indian Ocean

Background

Understanding the limits and population dynamics of closely related sibling species in the marine realm is particularly relevant in organisms that require management. The crown-of-thorns starfish Acanthaster planci, recently shown to be a species complex of at least four closely related species, is a coral predator infamous for its outbreaks that have devastated reefs throughout much of its Indo-Pacific distribution.

Methodology/Principal Findings

In this first Indian Ocean-wide genetic study of a marine organism we investigated the genetic structure and inferred the paleohistory of the two Indian Ocean sister-species of Acanthaster planci using mitochondrial DNA sequence analyses. We suggest that the first of two main diversification events led to the formation of a Southern and Northern Indian Ocean sister-species in the late Pliocene-early Pleistocene. The second led to the formation of two internal clades within each species around the onset of the last interglacial. The subsequent demographic history of the two lineages strongly differed, the Southern Indian Ocean sister-species showing a signature of recent population expansion and hardly any regional structure, whereas the Northern Indian Ocean sister-species apparently maintained a constant size with highly differentiated regional groupings that were asymmetrically connected by gene flow.

Conclusions/Significance

Past and present surface circulation patterns in conjunction with ocean primary productivity were identified as the processes most likely to have shaped the genetic structure between and within the two Indian Ocean lineages. This knowledge will help to understand the biological or ecological differences of the two sibling species and therefore aid in developing strategies to manage population outbreaks of this coral predator in the Indian Ocean.     

Revision of the genus Poromitra (Melamphaidae): Part 2. New species of the group P. crassiceps

Five new species of the genus Poromitra (family Melamphaidae) belonging to the group of species P. crassiceps are described. An important specific feature of this group is the structure of praeoperculum in which bony crests of the anterior edge are at an acute angle to each other, and the posterior and lower edges are uniformly (without break) spinulated with small spinules. In P. decipiens sp. nova described from the Indian Ocean (from the East Indian Ridge), the insertion of ventral fins is located posteriorly the vertical of the posterior edge of pectoral fin insertion, which makes this species similar to P. crassiceps and P. rugosa. The remaining four species have the insertion of ventral fins anteriorly the vertical (or at its level) of the posterior edge of pectoral fin insertion (as in P. unicornis and P. coronata). P. curilensis sp. nova inhabits the northern part of the Pacific Ocean from the Kuril Islands and the Japanese Islands to the Gulf of Alaska; P. indooceanica sp. nova is described from several individuals from the subtropical part of the Indian Ocean; P. glochidiata sp. nova, from catch in the Great Australian Bight; and P. kukuevi sp. nova, from the individual from the western tropical part of the Atlantic Ocean.