Cloning and Functional Expression of a Novel Geranylgeranyl Pyrophosphate Synthase Gene from Arabidopsis thaliana in Escherichia coli

A gene encoding a novel geranylgeranyl pyrophosphate (GGPP)synthase from Arabidopsis thaliana has been identified and termedGGPS5. The gene has been sequenced and expressed in Escherichiacoli. The deduced amino acid sequence showed 64.5% and 57.5%identity with a putative GGPP synthase from Arabidopsis andCapsicum annuum, respectively. GGPP enzymatic activity was detectedin E. coli cells expressing the GGPS5 gene in two differentways. One was the direct measurement of GGPP synthase activityin cell extracts and the other was the yellow color productionof cells when the GGPS5 gene was co-expressed with crtB, crtI,crtX, crtY and crtZ genes derived from Erwinia uredovora. (Received May 20, 1996; Accepted December 14, 1996)     

Hydroxypyruvate Reductase with a Carboxy-Terminal Targeting Signal to Microbodies is Expressed in Arabidopsis

Five Arabidopsis EST cDNA clones of hydroxypyruvate reductase(HPR), a photorespiratory enzyme in leaf peroxisomes, were sequenced.Deduced amino acid sequences revealed that HPR in Arabidopsiscontained the carboxy-terminal targeting signal to microbodies.Nucle-otide sequence analysis showed that the cDNA with thelongest insert contained an open reading frame of 1,158 bp whichencoded a polypeptide with 386 amino acids with a calculatedmolecular mass of 42,251 Da. A Southern blot analysis suggestedthat the Arabidopsis HPR gene, like that of the pumpkin HPRgene, exists as a single copy. Two kinds of pumpkin HPR mRNAmight be produced from a single gene by alternative splicing,but the structure of the genomic DNA indicated that the ArabidopsisHPR gene did not undergo alternative splicing. We detected apolypeptide with a molecular mass of 42 kDa in green leavesof Arabidopsis using an HPR-specific antibody. Immunoelectronmicroscopy revealed that Arabidopsis HPR protein was exclusivelylocalized in leaf peroxisomes in green leaves. These resultsindicate that HPR is expressed in a form with a carboxy-terminaltargeting signal to microbodies and is localized in microbodiesin Arabidopsis, suggesting that the differences in the genestructure and the regulation of gene expression of HPR are probablydue to species-specific differences in plants. (Received November 11, 1996; Accepted February 1, 1997)     

Expression in Yeast of a Fusion Gene Composed of the Promoter of a Heat-Shock Gene from Arabidopsis and a Bacterial Gene for {beta}-Glucuronidase

Production of a functional ß-glucuronidase (GUS) proteinwas induced by exposure of exponentially growing yeast cellsto heat shock after transformation of the GUS gene under thecontrol of the promoter of the heat-shock gene, HSP18.2, fromArabidopsis. Yeast cyr and bcy mutations appeared to have essentiallyno effect. ¹Present Address: Laboratory of Plant Molecular Biology, TheRockefeller University, 1230 York Avenue, New York, NY 10021-6399,U.S.A.     

Reduced Gravitropism in Hypocotyls of Starch-Deficient Mutants of Arabidopsis

Gravitropism was examined in dark- and light-grown hypocotylsof wild-type (WT), two reduced starch mutants (ACG 20 and ACG27), and a starchless mutant (ACG 21) of Arabidopsis. In addition,the starch content of these four strains was studied with lightand electron microscopy. Based on time course of curvature andorientation studies, the graviresponse in hypocotyls is proportionalto the amount of starch in a genotype. Furthermore, starch mutationsseem to primarily affect gravitropism rather than differentialgrowth since both phototropic curvature and growth rates amongthe four genotypes are approximately equal. Our results suggestthat gravity perception may require a greater plastid mass inhypocotyls compared to roots. The kinetics of gravitropic curvaturealso was compared following reorientation at 45°, 90°,and 135°. As has been reported for other plant species,the optimal angle of reorientation is 135° for WT Arabidopsisand the two reduced starch mutants, but the magnitude of curvatureof the starchless mutant appears to be independent of the initialangle of displacement. Taken together, the results of the presentstudy and our previous experiments with roots of the same fourgenotypes [Kiss et al. (1996) Physiol. Plant. 97: 237] supporta plastid-based hypothesis for gravity perception in plants. (Received December 16, 1996; Accepted February 7, 1997)     

FLC or not FLC: the other side of vernalization

Vernalization is the promotion of the competence for floweringby long periods of low temperatures such as those typicallyexperienced during winters. In Arabidopsis, the vernalizationresponse is, to a large extent, mediated by the repression ofthe floral repressor FLC, and the stable epigenetic silencingof FLC after cold treatments is essential for vernalization.In addition to FLC, other vernalization targets exist in Arabidopsis.In grasses, vernalization seems to be entirely independent ofFLC. Here, the current understanding of FLC-independent branchesof the vernalization pathway in Arabidopsis and vernalizationwithout FLC in grasses is discussed. This review focuses onthe role of AGL19, AGL24, and the MAF genes in Arabidopsis.Interestingly, vernalization acts through related molecularmachineries on distinct targets. In particular, protein complexessimilar to Drosophila Polycomb Repressive Complex 2 play a prominentrole in establishing an epigenetic cellular memory for cold-regulatedexpression states of AGL19 and FLC. Finally, the similar networktopology of the apparently independently evolved vernalizationpathways of grasses and Arabidopsis is discussed. Key words: AGL19, Arabidopsis, chromatin, epigenetics, FLC, flowering time, polycomb, PRC2, vernalization Received 19 December 2007; Revised 11 February 2008 Accepted 15 February 2008     

Haustoria of Cuscuta japonica, a Holoparasitic Flowering Plant, Are Induced by the Cooperative Effects of Far-Red Light and Tactile Stimuli

When seedlings of Cuscuta japonica were grown with Vigna radiata(the host plant) in a flower pot for 6 d under white light andthen irradiated with far-red or blue light (ca. 6 µmolphotons m^–2 s^–1), the seedlings parasitized V. radiata.However, no parasitism of the seedlings was observed under redor white light or in darkness. The parasitic behavior of seedlingsof C. japonica was observed even if an acrylic rod was usedas a substitute for the host plant. Upon incubation under far-redlight, the seedling twined tightly around the rod and developedhaustoria towards it. Haustoria also developed when apical andsubapical regions of seedlings were held between two glass platesthat were about 0.7 mm apart and were irradiated with far-redlight. However, no haustoria were induced by either the holdor irradiation alone. These results indicate that parasitismof Cuscuta japonica is controlled by the cooperative effectsof two physical signals, far-red light and appropriate tactilepressure. Our findings suggest that parasitism by the genusCuscuta involves a novel strategy. (Received April 10, 1996; Accepted August 21, 1996)     

Structure and Expression of Mitochondrial Citrate Synthases from Higher Plants

Mitochondrial citrate synthase (EC 4.1.3.7 [EC] ) represents the firstenzyme of the tricarboxylic acid cycle, catalyzing the condensationof acetyl-CoA and oxaloacetate, finally yielding citrate andCoA. We report here the isolation of cDNA clones encoding citratesynthase from Nicotiana tabacum, Beta vulgaris and Populus.Nucleotide and deduced amino acid sequences were compared withpreviously published sequences of mitochondrial citrate synthasesfrom Arabidopsis thaliana and potato, as well as with the sequenceof glyoxysomal citrate synthase from pumpkin. Homologies betweenthe various plant mitochondrial enzymes were in the range from77.2% (potato vs. Arabidopsis) to 94.2% (potato vs. tobacco)on the nucleotide level (coding regions only), and in the rangefrom 70.1% to 90.4% (potato vs. Arabidopsis, and potato vs.tobacco, respectively) on the amino acid level. Identities ofthe mitochondrial isozymes to the pumpkin glyoxysomal enzymewere below 30% on the nucleotide and amino acid level. In Northernblot experiments citrate synthase mRNA was detected in all tissuesanalyzed. However, levels of expression showed tissue dependencydespite the fact that citrate synthase is usually considereda house-keeping enzyme. Whether these different levels of expressionreflect tissuespecifc variations with respect to basic metabolismawaits further analysis. (Received May 20, 1996; Accepted August 20, 1996)     

Touch-Inducible Genes for Calmodulin and a Calmodulin-Related Protein Are Located in Tandem on a Chromosome of Arabidopsis thaliana

Genes for calmodulin and calmodulin-related proteins in Arabidopsisare up-regulated by a variety of physical stimuli, which includerain, wind and touch [Braam and Davis (1990) Cell 60: 357].We have isolated five genes for calmodulin (AtCALl, 2, 3, 5,6) and one gene for a calmodulin-related protein (AtCAL4) froman Arabidopsis genomic library. Touch stimulus of Arabidopsisplants induces the accumulation of mRNA transcribed from AtCAL4andAtCAL5, but not from the other isolated genes. The two touch-induciblegenes are arrayed in tandem with a short intergenic region of700 bp but they show different organ-specific patterns of expression. (Received April 27, 1995; Accepted July 20, 1995)     

Isolation, Properties and a Possible Function of a Water-Soluble Chlorophyll a/b-Protein from Brussels Sprouts

A water-soluble Chl a/b-protein (CP673) was isolated and purifiedfrom Brussels sprouts (Brassica oleracea L. var. gemmifera DC).The protein had a molecular mass of 78 kDa and an isoelectricpoint of 4.7, consisted of three or four subunits of 22 kDaand was extremely heat-stable. Although CP673 contained aboutone Chl a per protein, the blue and red absorption bands ofChl a that consisted of three or four Chl a forms with differentabsorption maxima suggested that there are several differentmodes or sites of binding for Chl a. Chl a/b ratio of largerthan 10 also indicated that Chl b is present only in a smallfraction of CP673. The heterogeneity of CP673 in terms of compositionand binding of Chl suggests that Chl is not an intrinsic componentof the Chl-protein. Homology search showed that the N-terminalamino acid sequence of CP673 is highly homologous with thatof a 22 kDa protein that accumulates in water-stressed leavesof two Brassicaceae plants, rapeseed and radish, but not withthose of the light-harvesting Chl a/b-proteins of photosynthesis.A possible function of the water-soluble Chl-protein was discussed. (Received September 17, 1996; Accepted November 18, 1996)     

Phytochrome B Is Not Detectable in the hy3 Mutant of Arabidopsis, Which Is Deficient in Responding to End-of-Day Far-Red Light Treatments

Immunoblot analysis using a monoclonal antibody specific tophytochrome B (phyB) suggest that this protein is undetectablein the hy3 mutant of Arabidopsis. Photophysiological experimentsrevealed that hy3 mutants do not display end-of-day far-redgrowth responses. Thus, this particular phytochrome responseseems to be mediated in large part by phyB. (Received September 20, 1991; Accepted September 26, 1991)     

In vivo interaction between atToc33 and atToc159 GTP-binding domains demonstrated in a plant split-ubiquitin system

The GTPases atToc33 and atToc159 are pre-protein receptor componentsof the translocon complex at the outer chloroplast membranein Arabidopsis. Despite their participation in the same complexin vivo, evidence for their interaction is still lacking. Here,a split-ubiquitin system is engineered for use in plants, andthe in vivo interaction of the Toc GTPases in Arabidopsis andtobacco protoplasts is shown. Using the same method, the self-interactionof the peroxisomal membrane protein atPex11e is demonstrated.The finding suggests a more general suitability of the split-ubiquitinsystem as a plant in vivo interaction assay. Key words: Heterodimerization, in vivo, protein–protein interaction, protoplast, split-ubiquitin, Toc GTPases Received 12 August 2008; Revised 18 October 2008 Accepted 20 October 2008     

Pigment Composition of a Novel Oxygenic Photosynthetic Prokaryote Containing Chlorophyll d as the Major Chlorophyll

The principal pigment found in the majority of oxygenic photosyntheticorganisms is known to be chlorophyll a. However, we isolateda new oxygenic photosynthetic prokaryote that contained chlorophylld as a predominant pigment with chlorophyll a being a minorpigment. Chlorophyll d had previously been noted but its naturaloccurrence and function remained unclear. Cells of the new prokaryotehad an absorption maximum at red region of 714–718 nmdue to chlorophyll d absorption, but no characteristic absorptionpeak of chlorophyll a around 680 nm was observed. Chlorophylld of the new organism was identified spectrophotometricallyin several solvents and its chemical structure was confirmedby NMR and FABMS analysis. The cell also contained a chlorophyllc-like pigment, zeaxanthin and a-carotene but not chlorophyllb and ß-carotene. The content of chlorophyll d accountedfor more than 2% of the cell dry weight, while the content ofchlorophyll a was less than 0.1%. The chlorophyll a/d ratioremained between 0.03 and 0.09 under different culture conditions.The light absorption characteristics and the high content ofchlorophyll d along with the small content of chlorophyll aindicated the existence of a new light utilization mechanisminvolving chlorophyll d. (Received October 7, 1996; Accepted December 16, 1996)     

Molecular Cytogenetics of the Genus Arabidopsis: In situ Localization of rDNA Sites, Chromosome Numbers and Diversity in Centromeric Heterochromatin

We have used in situ hybridization to determine the number ofsites of rDNA in species in the genus Arabidopsis. A. wallichii(2n = 16) has one major pair of sites and one minor pair ofsites, while A. pumila and A. griffithiana (both 2n = 32) havesix major and two minor rDNA sites. A. thaliana (2n = 10) isknown to have two pairs of rDNA sites. a highly repeated para-centromericsequence from A. thaliana, pAL1, is absent in the other threespecies. Hence the A.thaliana genome is not present (or thecentromeric DNA has evolved substantially) in the polyploidspecies A. pumila and A. griffithiana. Analysis of Arabidopsisspecies is a valuable complement to the large programmes forgenetic analysis of A. thaliana.Copyright 1993, 1999 AcademicPress Arabidopsis, centromeric DNA, maps (genetic), nuclear architecture, repetitive DNA, ribosomal DNA, rDNA, evolution, Brassicaceae, Crucifereae, in situ hybridization