Dynamic characteristics of Prochlorococcus and Synechococcus consumption by bacterivorous nanoflagellates

We compared the characteristics of ingestion of Prochlorococcus and Synechococcus by the marine heterotrophic nanoflagellate Pseudobodo sp. and by a mixed nanoflagellate culture (around 3 microm in size) obtained from an open sea oligotrophic area. Maximum ingestion rate on Synechococcus (2.7 Syn flagellate(-1) h(-1)) was reached at concentrations of 5 x 10(5) Syn mL(-1) and decreased between 6 x 10(5) and 1.5 x 10(6) Syn mL(-1). In order to validate laboratory data, one set of data on Synechococcus grazing was obtained during a field study in the oligotrophic northeastern Mediterranean Sea. Ingestion rates by heterotrophic nanoflagellates were related to Synechococcus abundance in the water, and the feeding rate showed a clear diel rhythm with consumption being highest during the night, declining during the day hours, and being lowest at dusk. Ingestion rates on Prochlorococcus increased linearly for the whole range of prey density used (i.e., from 1 x 10(3) to 3 x 10(6) Proc mL(-1)), with maximum ingestion of 6.7 Proc flagellate(-1) h(-1). However, for prey concentrations in the range of 10(3)-10(5), which are usually encountered in aquatic systems, ingestion rates were significantly less than on Synechococcus. In our experiments, both Prochlorococcus and Synechococcus proved to be poor food items for support of nanoflagellate growth.     

Impact of violacein-producing bacteria on survival and feeding of bacterivorous nanoflagellates

We studied the role of bacterial secondary metabolites in the context of grazing protection against protozoans. A model system was used to examine the impact of violacein-producing bacteria on feeding rates, growth, and survival of three common bacterivorous nanoflagellates. Freshwater isolates of Janthinobacterium lividum and Chromobacterium violaceum produced the purple pigment violacein and exhibited acute toxicity to the nanoflagellates tested. High-resolution video microscopy revealed that these bacteria were ingested by the flagellates at high rates. The uptake of less than three bacteria resulted in rapid flagellate cell death after about 20 min and cell lysis within 1 to 2 h. In selectivity experiments with nontoxic Pseudomonas putida MM1, flagellates did not discriminate against pigmented strains. Purified violacein from cell extracts of C. violaceum showed high toxicity to nanoflagellates. In addition, antiprotozoal activity was found to positively correlate with the violacein content of the bacterial strains. Pigment synthesis in C. violaceum is regulated by an N-acylhomoserine lactone (AHL)-dependent quorum-sensing system. An AHL-deficient, nonpigmented mutant provided high flagellate growth rates, while the addition of the natural C. violaceum AHL could restore toxicity. Moreover, it was shown that the presence of violacein-producing bacteria in an otherwise nontoxic bacterial diet considerably inhibited flagellate population growth. Our results suggest that violacein-producing bacteria possess a highly effective survival mechanism which may exemplify the potential of some bacterial secondary metabolites to undermine protozoan grazing pressure and population dynamics.     

Detection of bacterial populations in oyster tissue homogenates using direct microscopic counts and thymidine incorporation

Acridine orange direct counts and incorporation of [³H]thymidine ([³H]TdR) were used to determine the effectiveness of an antibiotic treatment on reducing bacterial activity in oyster tissue. Cell counts, as well as total [³H]TdR incorporation into the acid insoluble pool, were significantly lower in antibiotically treated oyster tissue homogenates than in untreated controls. However, rates of [³H]TdR incorporation were not significantly different between treatments, indicating increased metabolic activity (on a per cell basis) in the antibiotically treated bacterial population versus the control population.     

Branching,blending, and the evolution of cultural similarities and differences among human populations

It has been claimed that blending processes such as trade and exchange have always been more important in the evolution of cultural similarities and differences among human populations than the branching process of population fissioning. In this paper, we report the results of a novel comparative study designed to shed light on this claim. We fitted the bifurcating tree model that biologists use to represent the relationships of species to 21 biological data sets that have been used to reconstruct the relationships of species and/or higher level taxa and to 21 cultural data sets. We then compared the average fit between the biological data sets and the model with the average fit between the cultural data sets and the model. Given that the biological data sets can be confidently assumed to have been structured by speciation, which is a branching process, our assumption was that, if cultural evolution is dominated by blending processes, the fit between the bifurcating tree model and the cultural data sets should be significantly worse than the fit between the bifurcating tree model and the biological data sets. Conversely, if cultural evolution is dominated by branching processes, the fit between the bifurcating tree model and the cultural data sets should be no worse than the fit between the bifurcating tree model and the biological data sets. We found that the average fit between the cultural data sets and the bifurcating tree model was not significantly different from the fit between the biological data sets and the bifurcating tree model. This indicates that the cultural data sets are not less tree-like than are the biological data sets. As such, our analysis does not support the suggestion that blending processes have always been more important than branching processes in cultural evolution. We conclude from this that, rather than deciding how cultural evolution has proceeded a priori, researchers need to ascertain which model or combination of models is relevant in a particular case and why.     

Storage of soils for direct microbial counts

Summary The application of a number of standard storage techniques to a mull soil and millipede faeces resulted in significant changes in microbial populations measurable by a haemocytometer counting method.     

Pigmented nanoflagellates in the coastal western subtropical Pacific are important grazers on Synechococcus populations

Although the key grazers on Synechococcus and other planktonicmarine bacteria are generally thought to be nanoflagellates(both non-pigmented and pigmented) as well as ciliates, we previouslyfound in our western subtropical Pacific coastal study sitethat ciliates exerted almost no grazing pressure. In this study,we used fluorescently labeled particles (FLP) as Synechococcus-sizedmimics to examine the contribution of pigmented (may includeautotrophic and mixotrophic spp.) versus non-pigmented (heterotrophic)nanoflagellate grazing to Synechococcus morality. During thewarm season from June to September, > 50% of the nanoflagellatepopulation was pigmented (1.8–2 x 10³ versus 1.2–1.6x 10³ cells mL^–1). Consumption, or clearance rates perpigmented nanoflagellate, varied considerably (0.50–46.90nL cell^–1 h^–1), with the highest rates in June.Raw data showed pigmented nanoflagellate grazing to accountfor 2–94% (mean 43%) of Synechococcus production fromMay to October. Pigmented nanoflagellates consumed 12.5-foldmore Synechococcus than did ciliates. This study provides thefirst evidence that pigmented nanoflagellates are key grazersof Synechococcus populations in subtropical western Pacificcoastal waters.     

Robustness and uncertainty in estimates of butterfly abundance from transect counts

Many butterfly populations are monitored by counting the number of butterflies observed while walking transects during the butterfly’s flight season. Methods for estimating population abundance from these transect counts are appealing because they allow rare populations to be monitored without capture–recapture studies that could harm fragile individuals. An increasingly popular method for estimating abundance from transect counts relies on strong assumptions about the counting process and the processes that govern butterfly population dynamics. Here, we study the statistical performance of this method when underlying model assumptions are violated. We find that estimates of population size are robust to departures from underlying model assumptions, but that the uncertainty in these estimates (i.e., confidence intervals) is substantially underestimated. Alternative bootstrap and Bayesian methods provide better measures of the uncertainty in estimated population size, but are conditional upon knowledge of butterfly detectability. Because of these requirements, a mixed approach that combines data from small capture–recapture studies with transect counts strikes the best balance between accurate monitoring and minimal injury to individuals. Our study is motivated by monitoring studies for St. Francis satyr (Neonympha mitchelli francisci), a rare and relatively immobile butterfly occurring only in the sandhills region of south-central North Carolina, USA.     

Statistical evaluation of electronic and plate counts for estimating bacterial populations

Bacteria from cultures of Staphylococcus aureus, Pseudomonas geniculata, and Rhodotorula glutenis were counted by use of an electronic counter and by plate counts from broth cultures at selected periods from 0 to 24 hr. Variations in the two methods were noted, and the results were compared after calculating correlations, coefficients of variation, and nested analyses of variance. It was not possible to determine the absolute accuracy of the two methods; however, the precision of the results obtained with an electronic counter was better than that obtained with plate counting. It appears that electronic counting, because of ease and convenience, provides better comparative counts at a particular stage of growth, especially during the early stages of the growth period, whereas plate counting yields the best results in determining growth curves.     

Direct microscopical versus cultural method in screening for candidiasis among non gravid nigerian women

The incidence of candidiasis in 125 symptomless, non-gravid women in Ile-Ife State Hospital, Ile-Ife, Oyo-State of Nigeria was determined by either microscopic observation or cultural methods. Among the three techniques investigated, the cultural method had the highest recovery rate with 60% of the cultures from 125 patients positive. Statistical analysis of the data (X²) demonstrated a significant difference between the recovery rates at the P<0.01 level. The implications of these findings were discussed in the text.     

The nature of interactions responsible for the differences in the affinities of histones for DNA

Electrophoretic studies on the sequential binding of histones to DNA and to polyphosphate in low ionic strength solution have shown that the affinities of histones for both the polyanions decreases in the same order: H4 ～ H3 > H2A > H2B>H1. This permits to suggest that hydrophobic DNA-histone interactions do not determine the relative affinity of histones for DNA. Non-ionic interactions within and between histone molecules participate in determining the histone affinity for DNA affecting electrostatic DNA-histone interactions.     

Global estimates and projections of world populations

The United Nations 2002 Revision of the world population projections has radically reviewed the results of the preceding revision. The results obtained show that it is reasonalbe revision. The results obtained show that it is reasonable to dispel the fear of an excessive and perhaps uncontrolled growth of world population, which alarmed public opinion and many international organizations in the last decades. Even in the medium variant, by the year 2050 world population will be less than 9 billion, with zero growth. In view of the fact that fertility will remain below replacement level, after that a process of slow decrease might set in, despite a further sharp increase in survival rates. The objectives of the projections are of an administrative nature: firstly, to adapt global and local policies to the real needs of the population; secondly, to distinguish the trends that are favourable or harmful for the population's greater wel-being; thirdly, to govern society in such a way as to achieve the highest possible standard of living, which must be extended to everyone, long-lasting, and therefore compatible with the limits imposed by the environment; the final objective is not to subtract resources from the future generations.     

Molecular regions responsible for differences in activation between heag channels

The ether-a-go-go potassium channels heag1 and heag2 are highly homologous; however, the activation properties between the two channels are different. We have studied the molecular regions that determine differences in activation properties by making chimeras between the two channels, expressing them in oocytes, and recording currents with two-electrode voltage-clamp. The activation time course has an initial sigmoidal component dependent on the Cole-Moore shift, followed by a faster component. We show that not only is the extreme N terminus involved in differences between heag1 and heag2 channels, but also the PAS domain itself. Also multiple regions of the membrane-spanning part of the channel appear to be involved, with different regions involved for the early and late time courses, reflecting their different mechanisms. The later time course involved S1 and P-S6 regions. Taken together, our data show that activation involves multiple regions of the N terminal region and membrane-spanning regions of the channel.     

Diversity of palmar pattern ridge counts in Iranian populations

We analyzed bilateral palmar prints of 3,158 individuals from 13 Iranian populations of diverse origins for palmar pattern ridge counts. Right palms did not show greater counts than the left in the majority of the populations studied. Highly significant interpopulational variation was observed for most palmar areas of both males and females. Dendrograms of males and combined sexes showed a good fit with the ethnohistoric background of the populations studied. The results thus demonstrate variation in the palmar pattern ridge counts of populations of diverse origins and may be used as a good measure of population distance.     

It counts who counts: an experimental evaluation of the importance of observer effects on spotlight count estimates

Spotlight surveys conducted by volunteers is a promising method to assess the abundance of nocturnally active mammals, but estimates are subject to bias if different observer groups differ in their ability to detect animals in the dark. We quantified the variation amongst volunteer spotlight observers with respect to their ability to detect and estimate distance to realistic animal silhouettes at different distances. Detection probabilities were higher for observers experienced in spotlighting mammals than for inexperienced observers, higher for observers with a hunting background compared with non-hunters and decreased as function of age but were independent of sex or educational background. If observer-specific detection probabilities were applied to real counting routes, point count estimates from inexperienced observers without a hunting background would only be 43 % (95 % CI, 39–48) of what inexperienced hunters with a hunting background would obtain and 29 % (25–33) of what experienced spotlight observers would detect. Mean estimated distances to objects did not deviate from true distances (no bias) but were highly imprecise. Female non-hunters estimated distances less precisely than other observers and precision increased with age. The study shows that observer effects may influence abundance estimates and underlines the importance of testing and accounting for observer effects when designing citizen science-based population survey programmes.     

Effect of the pre-treatments for milk samples filtration on direct viable cell counts

Escherichia coli O25: H–42 was selected to study the effect of pre-treatments on the enumeration of direct viable cells from milk samples. Before and after inducing cell elongation by cellular division inhibitors, three pre-treatments for milk-filtration were used. One involved a pretreatment with trypsin (1·5 min at 50°C), addition of hot Triton X-100 after heating and filter rinses with phosphate saline buffer. The other two involved pretreatment with trypsin and Triton X-100 (10 min at 50°C), filter rinses with hot Triton X-100 and organic solvents. Pre-treatments applied after inducing cell elongation had an effect on cell recovery from milk samples depending on the pre-treatment used. The most suitable, on the basis of the number and percentage of enlarged cells obtained was the first described. The others selectively affected recovery of elongated cells. Pretreatments applied before inducing the cell elongation, negatively affected viability with enumerations in milk samples being significantly ( P < 0·001) lower than those found in controls. However, the negative effects of first pre-treatment on viability was lower than that produced by the pre-treatments involving organic solvents.     

Investigation of factors responsible for cell line cytoplasmic expression differences

Background  

Previous work has described a novel cytoplasmic expression system that results in a 20-fold increase in the levels of gene expression over a standard CMV-based nuclear expression system, as compared with a 2–3 fold increase seen with previous similar systems. While this increase was seen with BHK and Neuro-2a cells, further studies revealed that some cell lines, such as COS-7, demonstrated relatively poor levels of cytoplasmic expression. The objective of this study was to determine what factors were responsible for the different expression levels between BHK (a high expressing cell line) and COS-7 (a low expressing cell line).     

A comparison of fluorochromes for direct viable counts by image analysis

Total direct and direct viable counts of fresh and injured cultures of Escherichia coli were determined by image analysis in preparations stained with acridine orange, ethidium bromide and 4',6-diamidino-2-phenyl indole (DAPI). Cells stained with DAPI were not detected by image analysis. Fresh cultures stained with acridine orange or ethidium bromide gave comparable counts. Injured E. coli stained with ethidium bromide gave higher counts that with acridine orange. Injured cultures stained with acridine orange contain high proportions of green cells which are less easily detected than red cells in image analysis. In certain cases it may be better to use ethidium bromide, which stains all cells red, for direct viable counts by image analysis.