Potential accumulative effect of the herbicide glyphosate on glyphosate-tolerant maize rhizobacterial communities over a three-year cultivation period

Background

Glyphosate is a herbicide that is liable to be used in the extensive cultivation of glyphosate-tolerant cultivars. The potential accumulation of the relative effect of glyphosate on the rhizobacterial communities of glyphosate-tolerant maize has been monitored over a period of three years.

Methodology/Principal Findings

The composition of rhizobacterial communities is known to vary with soil texture, hence, the analyses have been performed in two agricultural fields with a different soil texture. The accumulative effects of glyphosate have been monitored by means of high throughput DNA pyrosequencing of the bacterial DNA coding for the 16S rRNA hypervariable V6 region from rhizobacterial communities. The relative composition of the rhizobacterial communities does vary in each field over the three-year period. The overall distribution of the bacterial phyla seems to change from one year to the next similarly in the untreated and glyphosate-treated soils in both fields. The two methods used to estimate bacterial diversity offered consistent results and are equally suitable for diversity assessment.

Conclusions/Significance

The glyphosate treatment during the three-year period of seasonal cultivation in two different fields did not seem to significantly change the maize rhizobacterial communities when compared to those of the untreated soil. This may be particularly relevant with respect to a potential authorisation to cultivate glyphosate-tolerant maize in the European Union.     

Simultaneous assessment of the effects of an herbicide on the triad: rhizobacterial community, an herbicide degrading soil bacterium and their plant host

Aims

This work addresses the relevant effects that one single compound, used as model herbicide, provokes on the activity/survival of a suitable herbicide degrading model bacterium and on a plant that hosts this bacterium and its bacterial rhizospheric community.

Methods

The effects of the herbicide 2,4-dichlorophenoxyacetic acid (2,4-D), on Acacia caven hosting the 2,4-D degrading bacterium Cupriavidus pinatubonensis JMP134, and its rhizospheric microbiota, were simultaneously addressed in plant soil microcosms, and followed by culture dependent and independent procedures, herbicide removal tests, bioprotection assays and use of encapsulated bacterial cells.

Results

The herbicide provokes deleterious effects on the plant, which are significantly diminished by the presence of the plant associated C. pinatubonensis, especially with encapsulated cells. This improvement correlated with increased 2,4-D degradation rates. The herbicide significantly changes the structure of the A. caven bacterial rhizospheric community; and it also diminishes the preference of C. pinatubonensis for the A. caven rhizosphere compared with the surrounding bulk soil.

Conclusions

The addition of an herbicide to soil triggers a complex, although more or less predictable, suite of effects on rhizobacterial communities, herbicide degrading bacteria and their plant hosts that should be taken into account in fundamental studies and design of bio(phyto)remediation procedures.     

Effect of 1.10-phenanthroline, a photodynamic herbicide on the development and structure of maize chloroplasts

Effect of low (5 mmol·dm⁻³) and high (10 or 20 mmol·dm⁻³) doses of 1.10-phenanthroline (Phe), a photodynamic herbicide, on the development of chloroplasts in etiolated and subsequently illuminated maize seedlings and on the structure of already developed chloroplasts of green maize seedlings was examined. Etiolated and then irradiated plants were resistant to 5 mmol·dm⁻³ of Phe with respect to morphology, however Phe caused inhibition of greening and of grana formation. Higher Phe concentrations followed by exposure to light caused not only total inhibition of greening but also dilation of thylakoids, swelling of chloroplasts, and finally total destruction of chloroplast structure. Application of Phe in the same concentrations to green plants revealed that they were resistant to low dose of Phe with respect to morphology and structure of chloroplasts, however 10 and 20 mmol·dm⁻³ Phe and illumination caused the loss of turgor of treated plants and other photooxidative damages seen at the ultrastructural level. We concluded that maize, as representant of monocotyledonous plants, is resistant to low (5 mmol·dm⁻³) Phe concentration. Higher (10 or 20 mmol·dm⁻³) concentrations, used to determine the site of damage and mode of action of Phe on the level of cell revealed that action of photodynamic herbicides is based on standard photoinhibition mechanism and also probably on their chelating properties.     

Lymphangioma of the pancreas: a multimodal approach to pre‐operative diagnosis

Background: Lymphangioma of the pancreas is an extremely rare benign tumour of lymphatic origin, with only four cases diagnosed by EUS‐FNA reported to date. Methods and materials: Five cases of either cytologically or histologically diagnosed pancreatic lymphangioma with pre‐operative cytological analysis by EUS‐FNAC were reviewed. Results: All patients were female, with a mean age of 56.4 years. By imaging, the cystic lesions ranged in size from 2 to 7 cm (mean 4.5 cm) and were mainly located in the head of the pancreas. All cysts had thin walls and no cyst demonstrated a mural nodule. Diagnosis based on imaging features was benign in all cases due to the absence of high‐risk features. Four samples were sent for biochemical analysis, which showed low CEA levels (range, <0.5–19.4 ng/ml; mean, 5.45 ng/ml) and CA 19.9 and CA 72.4 levels within normal range. All cyst fluids showed numerous small lymphocytes with no atypia; no epithelial cells were present, including no gastrointestinal contamination. Flow cytometry in two cases showed T lymphocytes with a mature phenotype. Surgical resection in two patients confirmed the cytological diagnosis. Benign clinical follow‐up was available in three patients at 2, 3 and 3.5 years. Conclusion: A multimodal approach to cytological diagnosis (combining clinical, radiological and cyst fluid gross, biochemical and cytological characteristics) can lead to the diagnosis of this cystic neoplasm and distinguish it from other more common cysts in the pancreas, potentially avoiding the need for unnecessary surgery.     

Inflexible versus flexible: the influence of temperature and photoperiod on pre‐ and post‐eyespot development time in Libellulidae (Odonata)

Temperature and photoperiod are important environmental parameters for organisms. The present study tests the hypothesis that, during embryogenesis, temperature and photoperiod influence pre ‐ and post ‐ eyespot development time in dragonflies of the family Libellulidae differently. Eggs are used from eight species (five different genera, from Africa/Europe, and lentic/lotic habitat preferences). The eggs are reared under different constant or fluctuating temperature and light conditions. There are no general species‐specific degree‐days for pre ‐ or the post ‐ eyespot development in these species. In all study species, the variance within and between the treatments of the duration in days and the degree‐days of pre ‐ eyespot development is lower than that of post ‐ eyespot development. Pre ‐ eyespot development appears to be less flexible in its reaction to environmental influences. By contrast, post ‐ eyespot development appears to react more flexibly to environmental influences. All eight species show the same pattern. This indicates strongly that this flexibility is a general pattern in Libellulidae that might help the species within this family to cope successfully with variations in environmental conditions. Because eyespot development and katatrepsis occur close to each other, the above‐described pattern might also appear in other odonates and in other insect groups that exhibit katatrepsis. For all of them, it is essential for survival to match the time of hatching with adequate external temperature and photoperiodic conditions.     

Effects on straw decay of the herbicides paraquat and glyphosate in combination with nitrogen amendments

The effects of paraquat were studied at 4.7 kg a. i./ha and of glyphosate at 9.4 kg a. i./ha on the weight loss and rate of oxygen uptake by stems of barley straw, incubated on the soil surface for various periods of time, and stems and leaves of wheat straw on the soil surface or covered with a shallow layer of soil. In general, paraquat reduced weight loss and frequently oxygen uptake. Glyphosate normally had no effect but occasionally it was stimulatory. However, in isolated instances, paraquat was inactive and glyphosate slightly inhibitory. Leaves decayed faster than stems. Burial, as well as the addition to straw of leaf protein, Nitrochalk, urea and clover plants increased decomposition in all treatments, but nitrogen amendments were less effective in those with paraquat. For example, urea enhanced weight loss after 21 wk from 19 to 34% of the initial weight in unsprayed wheat straw, from 12 to 24% in paraquat-treated and from 20 to 37% in glyphosate-treated straw, indicating that conditions stimulating decomposition may attenuate but not entirely eliminate the inhibitory effects of paraquat. A repeated addition of nitrogen to straw in various stages of decay increased oxygen uptake in all treatments but least in the paraquat-treated straw, implying that a complete recovery from the initial curtailment of microbial activity, brought about by this herbicide, did not occur. Although the concentration of paraquat used was nine times greater than the minimum recommended for field application, the degree of inhibition observed in these laboratory experiments was probably not sufficiently great to be of marked economic importance.     

The club‐shaped gland of amphioxus: export of secretion to the pharynx in pre‐metamorphic larvae and apoptosis during metamorphosis

In amphioxus larvae, the club‐shaped gland is a tube connecting the pharyngeal lumen with the external environment. The functions of the gland and its fate during the larva‐to‐juvenile metamorphosis have long been controversial. Here we use a fixative including ruthenium red to preserve extracellular secretions (presumably glycoproteins) in late pre‐metamorphic larvae. This procedure reveals reddish, fibrogranular material in the lumen of the club‐shaped gland and in the pharynx adjacent to the gland's inner opening. This finding strengthens the idea that secretions of the club‐shaped gland are exported to the pharyngeal lumen to help form a mucous trap for capturing food particles entering the mouth. We also use the terminal desoxynucleotidyl transferase‐mediated dUTP nick end labelling (TUNEL) assay to study apoptosis in the tissues of metamorphosing larvae. One of the earliest events of metamorphosis is the massive apoptotic destruction of the club‐shaped gland. Therefore, despite some previous opinions to the contrary, the cells of the gland do not survive to participate in the genesis of the definitive endostyle or any other post‐larval structures.     

Rab3a interacting molecule (RIM) and the tethering of pre‐synaptic transmitter release site‐associated CaV2.2 calcium channels

Biochemical and physiological evidence suggest that pre‐synaptic calcium channels are attached to the transmitter release site within the active zone by a molecular tether. A recent study has proposed that ‘Rab3a Interacting Molecule’ (RIM) serves as the tether for CaV2.1 channels in mouse brain, based in part on biochemical co‐immunoprecipitation (co‐IP) using a monoclonal antibody, mRIM. We previously argued against this idea for CaV2.2 calcium channel at chick synapses based on experiments using a different anti‐RIM antibody, pRIM1,2: while staining for the two proteins co‐localized and co‐varied at the transmitter release face, consistent with an association, they failed to co‐IP from a synaptosome membrane lysate. RIM is, however, a family of proteins and we tested the possibility that the mRIM antibody used in the more recent study identifies a particular channel‐tethering variant. We find that co‐immunostaining with mRIM and anti‐CaV2.2 antibody neither co‐localized nor co‐varied at the transmitter release face and the two proteins did not co‐IP, arguing against a common protein complex and a key CaV2.2 scaffolding role for RIM at the active zone. The differing results might be reconciled, however, in a model where a RIM family member contributes to a protein bridge that anchors the pre‐fusion secretory vesicle to the calcium channel protein complex.     

Influence of uranium on bacterial communities: a comparison of natural uranium-rich soils with controls

This study investigated the influence of uranium on the indigenous bacterial community structure in natural soils with high uranium content. Radioactive soil samples exhibiting 0.26% - 25.5% U in mass were analyzed and compared with nearby control soils containing trace uranium. EXAFS and XRD analyses of soils revealed the presence of U(VI) and uranium-phosphate mineral phases, identified as sabugalite and meta-autunite. A comparative analysis of bacterial community fingerprints using denaturing gradient gel electrophoresis (DGGE) revealed the presence of a complex population in both control and uranium-rich samples. However, bacterial communities inhabiting uraniferous soils exhibited specific fingerprints that were remarkably stable over time, in contrast to populations from nearby control samples. Representatives of Acidobacteria, Proteobacteria, and seven others phyla were detected in DGGE bands specific to uraniferous samples. In particular, sequences related to iron-reducing bacteria such as Geobacter and Geothrix were identified concomitantly with iron-oxidizing species such as Gallionella and Sideroxydans. All together, our results demonstrate that uranium exerts a permanent high pressure on soil bacterial communities and suggest the existence of a uranium redox cycle mediated by bacteria in the soil.     

Climate change,boundary increase and elongation of a pre‐existing cline: A case study in Drosophila ananassae

During the past two to three decades, Drosophila ananassae, a warm adapted tropical species, has invaded low to mid altitude localities in the western Himalayas. Due to its cold sensitivity, this species had never been recorded from higher latitudes as well as altitudes in India to the 1960s. A latitudinal cline in this desiccation‐sensitive species corresponds with southern humid tropical localities rather than northern drier subtropical localities. An extension of its cline into lowland to midland montane localities has resulted due to global climatic change as well as local thermal effects through anthropogenic impact. However, D. ananassae populations at species borders are characterized by lower genetic variability for body melanization as well as for desiccation resistance. There is a lack of thermal plastic effects for body melanization, and the observed extended cline might represent evolutionary (genetic) response due to selection pressure imposed by drier habitats. A comparison of fecundity, hatchability and viability at three growth temperatures (17, 20 and 25°C) showed significant reduction in trait values at 17°C in D. ananassae. Thus, its recent range expansion into northern montane localities might involve genetic effects on stress‐related traits and plastic effects on life history traits. We suggest that D. ananassae could serve as an indicator species for analyzing range expansion under changing climatic conditions.     

Tornaria of hemichordates and other dipleurula‐type larvae: a comparison*

The evolutionary origin of phylum Chordata is the subject of intensive discussion, with the most conflicting views prevalent. One popular theory advocates the separation of chordates from a dipleurula‐like ancestor. Thus the dipleurula‐type larvae (tornaria of enteropneusts, auricularia and bipinnaria of echinoderms) are considered to recapitulate the ancestral features and the direct evolutionary path from Echinodermata and Hemichordata to Chordata (i.e. Garstang 1894 Zool. Anzeiger 27, 122–125; Grobben 1908 Verh. Zool.‐Bot. Ges. Wien 58, 491–511; Dillon 1965 Evolution 19, 436–446; Jollie 1973 Acta Zool. (Stockholm) 54, 81–100; Ivanova‐Kazas and Ivanov 1987 Sov. J. Mar. Biol. 13, 67–80; Crowther and Whittaker 1992 J. Neurophysiol. 23, 280–292; Lacalli 1994 Am. Zool. 34, 533–541; Lacalli et al. 1999 Proc. R. Soc. Biol. Series B 266, 1461–1470; Nielsen 1999 Dev. Genes Evol. 209, 198–205). Comparison of the nervous system in enteropneust tornariae and echinoderm larvae has revealed however, striking differences in distribution of biogenic amines and cholinesterase activity. In tornariae, monoamine‐containing cells concentrate in the aboral and oesophageal ganglia. In echinoderms, they are located along the ciliary bands throughout their length. The difference in distribution of cholinesterase activity in each group reasonably suggests that acetylcholine‐dependent control of locomotion also differs. Our data do not support the homology of the dipleurula‐type larvae. Therefore we believe in the course of adaptive evolution, larvae of certain marine invertebrates acquired a set of common morphological and behavioural characteristics, yet retained different physiological mechanisms of behavioural regulation. Thus, similarities in the dipleurula‐type larvae (tornaria, auricularia or bipinnaria, and actinotrocha) may have originated from convergence rather then from a common dipleurula‐type predecessor. In consequence we must call into question any attempt to trace the ancestors of Chordata to the dipleurula‐type animal.     

Effect of glyphosate toxicity on growth, pigment and alkaline phosphatase activity in cyanobacterium Anabaena doliolum: a role of inorganic phosphate in glyphosate tolerance

Response of glyphosate toxicity on photoautotrophic cyanobacterium A. doliolum and its mutant strain was investigated. Chlorophyll a content of both the wild type and mutant strain in the presence of glyphosate (N-phosphonomethyl glycine) initially showed an increasing trend when supplemented with Pi and a declining tendency under the Pi-starved condition. The results suggested that both the wild type and mutant strains were more sensitive to glyphosate in the absence of phosphate. Alkaline phosphatase activity of wild type strain in the presence of Pi, enhanced in response to addition of glyphosate (40 microg/ml), but the activity remained unaltered by addition of glyphosate in the Pi-starved cells, whereas the alkaline phosphatase activity in the mutant strain under both Pi-starved as well as unstarved conditions was stimulated (approximately 5.4 and 3.1-fold, respectively) by addition of glyphosate. The results on alkaline phosphatase activity indicated a glyphosate-induced depletion in the phosphate content of the cells, particularly in the mutant strain, as evident from the stimulated activity of alkaline phosphatase. It is suggested that enzyme activity in the Pi-starved wild type cells may not be influenced any further by glyphosate, as cellular phosphate reserve might not be available for further depletion.     

Identifying qualitative effects of different grazing types on below‐ground communities and function in a long‐term field experiment

Herbivory is an important modulator of plant biodiversity and productivity in grasslands, but our understanding of herbivore‐induced changes on below‐ground processes and communities is limited. Using a long‐term (17 years) experimental site, we evaluated impacts of rabbit and invertebrate grazers on some soil functions involved in carbon cycling, microbial diversity, structure and functional composition. Both rabbit and invertebrate grazing impacted soil functions and microbial community structure. All functional community measures (functions, biogeochemical cycling genes, network association between different taxa) were more strongly affected by invertebrate grazers than rabbits. Furthermore, our results suggest that exclusion of invertebrate grazers decreases both microbial biomass and abundance of genes associated with key biogeochemical cycles, and could thus have long‐term consequences for ecosystem functions. The mechanism behind these impacts are likely to be driven by both direct effects of grazing altering the pattern of nutrient inputs and by indirect effects through changes in plant species composition. However, we could not entirely discount that the pesticide used to exclude invertebrates may have affected some microbial community measures. Nevertheless, our work illustrates that human activity that affects grazing intensity may affect ecosystem functioning and sustainability, as regulated by multi‐trophic interactions between above‐ and below‐ground communities.     

Functional groups and patterns of organization in North American ant communities: a comparison with Australia

Ant distribution and behavioural dominance is examined at nine sites along an elevational gradient (1400–2600 m) in south eastern Arizona, in order to classify North American species according to a functional group scheme used extensively in Australia. The functional groups are then used as a basis for determining patterns of community structure along the environmental gradient, and for comparing community structure between Australia and North America. Quantitative information on species com- position was obtained from pitfall traps, and patterns of ant abundance at tuna baits were used to determine relative behavioural dominance among taxa. A total of eighty-three species from twenty-eight genera was recorded along the elevational gradient, with site species richness ranging from four (high elevation Douglas fir forest) to thirty-three (mid elevation oak–juniper woodland). There was a strong correlation between ant abundance and richness, which was not an artefact of sampling intensity. The most common ants were species of Forelius, Monomorium, Crematogaster and Pheidole at the three desert sites, species of Formica, Pheidole and Crematogaster at the three woodland sites, and species of Prenolepis and Formica at one forest site. No species were abundant at two other forest sites. The most common species in traps also tended to be the most common species at baits. In terms of behavioural dominance, highly competitive ants included species of Solenopsis, Forelius, Monomorium and Liometopum. Species of Pheidole and Crematogaster tended to be moderately competitive, whereas species of Dory- myrmex, Myrmica, Camponotus and Formica (fusca gp) had low competitive ability. On the basis of these results and on published records of other taxa, North American ants were assigned to functional groups as follows (major taxa only given here): Dominant Dolichoderinae—Forelius, Liome- topum; Subordinate Camponotini—Camponotus; Hot Climate Specialists—Pogonomyrmex, Myrmecocystus; Cold Climate Specialists—Formica (rufa, exsecta and microgyna groups), Leptothorax, Stenamma, Lasius, Prenolepis; Cryptic Species—Smithistruma, Solenopsis (subgenus Diplorhop- trum), Acanthomyops; Opportunists—Formica (fusca group), Myrmica, Paratrechina, Dorymyrmex; Generalized Myr- micinae—Pheidole, Crematogaster, Monomorium; Specialist Predators—no major taxa. Functional group composition varied systematically along the elevation gradient: Dominant Dolichoderinae, Generalized Myrà micinae and Hot Climate Specialists were predominant at desert sites; Generalized Myrmicinae and Opportunists were predominant at woodland sites; and Opportunists and Cold Climate Specialists were predominant at forest sites. These patterns are consistent with published studies from elsewhere in North America. Almost all North American taxa can be matched with what appear to be ecologically equivalent taxa in Australia, and biogeographic patterns of functional group composition are broadly similar across the two continents. The major differences are that Australian ant communities are far richer in species, and are almost always dominated by dolichoderines, particularly species of Iridomyrmex. Generalized myrmicines are subdominant to dolichoderines in Australia, but are the behaviourally dominant ants throughout the warmer parts of North America. In cool-temperate North America, species of Formica (especially rufa and exsecta groups) are behaviourally dominant, as they are throughout the Palearctic. Some major features of the North American fauna can be linked to its poor representation of Dominant Dolichoderinae, including (1) the relatively low degree of physiological, morphological and behavioural specialization of Hot Climate Specialists; (2) behavioural dominance by formicines in cool-temperate habitats; and (3) the susceptibility to invasion by behaviourally dominant species such as the imported fire ant Solenopsis invicta and the Argentine ant Linepithema humile.