Adaptive plasticity in ontogenetic niche shifts stabilizes consumer-resource dynamics

Ontogenetic niche shifts, changes in the diet or habitats of organisms during their ontogeny, are widespread among various animal taxa. Ontogenetic niche shifts introduce stage structure in a population with different stages interacting with different communities and can substantially affect their dynamics. In this article, I use mathematical models to test the hypothesis that adaptive plasticity in the timing of ontogenetic niche shifts has a stabilizing effect on consumer-resource dynamics. Adaptive plasticity allows consumers in one ontogenetic niche to perform an early shift to the next ontogenetic niche if the resource density of the first niche is low. The early shift will reduce predation by the consumer on the scarce resource. On the other hand, adaptive plasticity allows consumers to delay their shift to the next niche if the resource density of the first niche is high. The delayed shift will increase the predation on the abundant resource. As a result, the scarce resource will tend to increase, and the abundant resource will tend to decrease. This causes density-dependent negative feedback in the resource dynamics, which stabilizes the consumer-resource dynamics. To test this hypothesis, I compare three consumer-resource models differing in terms of mechanisms controlling the timing of the ontogenetic niche shift: the fixed-age model assumes that the age at which the ontogenetic niche shift occurs is fixed; the fixed-size model assumes that the size at the shift is fixed; and the adaptive plasticity model assumes that the timing of the shift is such that the individual fitness of the consumer is maximized. I show that only the adaptive plasticity model has a locally stable equilibrium and that the stabilizing effect is due to the density-dependent negative feedback in the resource dynamics. I discuss the ontogenetic niche shifts of lake fish in light of the obtained result.     

A hypothesis-testing framework for studies investigating ontogenetic niche shifts using stable isotope ratios

Ontogenetic niche shifts occur across diverse taxonomic groups, and can have critical implications for population dynamics, community structure, and ecosystem function. In this study, we provide a hypothesis-testing framework combining univariate and multivariate analyses to examine ontogenetic niche shifts using stable isotope ratios. This framework is based on three distinct ontogenetic niche shift scenarios, i.e., (1) no niche shift, (2) niche expansion/reduction, and (3) discrete niche shift between size classes. We developed criteria for identifying each scenario, as based on three important resource use characteristics, i.e., niche width, niche position, and niche overlap. We provide an empirical example for each ontogenetic niche shift scenario, illustrating differences in resource use characteristics among different organisms. The present framework provides a foundation for future studies on ontogenetic niche shifts, and also can be applied to examine resource variability among other population sub-groupings (e.g., by sex or phenotype).     

Feeding ecology of the Kızılırmak toothcarp, <Emphasis Type="Italic">Aphanius marassantensis</Emphasis>: ontogenetic shift and seasonal diet variation

We studied the feeding ecology of an endemic cyprinodontid fish, Aphanius marassantensis (K?z?l?rmak Toothcarp), with special emphasis on seasonal and ontogenetic diet shift. The dietary composition revealed an omnivorous diet with great seasonal and ontogenetic variation. Cladocera and Calanoid Copepods (Diaptomus sp.) dominated the diet in Spring and Summer, whereas the food items of plant origin e.g. filamentous algae and diatoms were the most important components in Autumn and Winter. An ontogenetic diet shift was also demonstrated. While the feeding of juveniles was based mostly on planktonic organisms, adult individuals preferred larger prey taxa, such as Gammarus sp. and Gastropods. There was no significant sex-related variation in feeding with the exception for the volume of gut content. The investigation on the feeding strategy of A. marassantensis suggested a generalised feeding pattern with some specialised individuals. This generalist feeding habits may account for the well-established population of this species in a big reservoir under coexistence of two non-native fish species, Pseudorasbora parva and Atherina boyeri.     

Stable isotope analysis of vertebrae reveals ontogenetic changes in habitat in an endothermic pelagic shark

Ontogenetic changes in habitat are driven by shifting life-history requirements and play an important role in population dynamics. However, large portions of the life history of many pelagic species are still poorly understood or unknown. We used a novel combination of stable isotope analysis of vertebral annuli, Bayesian mixing models, isoscapes and electronic tag data to reconstruct ontogenetic patterns of habitat and resource use in a pelagic apex predator, the salmon shark (Lamna ditropis). Results identified the North Pacific Transition Zone as the major nursery area for salmon sharks and revealed an ontogenetic shift around the age of maturity from oceanic to increased use of neritic habitats. The nursery habitat may reflect trade-offs between prey availability, predation pressure and thermal constraints on juvenile endothermic sharks. The ontogenetic shift in habitat coincided with a reduction of isotopic niche, possibly reflecting specialization upon particular prey or habitats. Using tagging data to inform Bayesian isotopic mixing models revealed that adult sharks primarily use neritic habitats of Alaska yet receive a trophic subsidy from oceanic habitats. Integrating the multiple methods used here provides a powerful approach to retrospectively study the ecology and life history of migratory species throughout their ontogeny.     

Bothrops jararaca venom proteome rearrangement upon neonate to adult transition

The pharmacological activities displayed by Bothrops jararaca venom undergo a significant ontogenetic shift. Similarly, the diet of this species changes from ectothermic prey in early life to endothermic prey in adulthood. In this study we used large and representative newborn and adult venom samples consisting of pools from 694 and 110 specimens, respectively, and demonstrate a significant ontogenetic shift in the venom proteome complexity of B. jararaca. 2-DE coupled to MS protein identification showed a clear rearrangement of the toxin arsenal both in terms of the total proteome, as of the glycoproteome. N-glycosylation seems to play a key role in venom protein variability between newborn and adult specimens. Upon the snake development, the subproteome of metalloproteinases undergoes a shift from a P-III-rich to a P-I-rich profile while the serine proteinase profile does not vary significantly. We also used isobaric tag labeling (iTRAQ) of venom tryptic peptides for the first time to examine the quantitative changes in the venom toxins of B. jararaca upon neonate to adult transition. The iTRAQ analysis showed changes in various toxin classes, especially the proteinases. Our study expands the in-depth understanding of venom complexity variation particularly with regard to toxin families that have been associated with envenomation pathogenesis.     

Cannibalism prevents evolutionary suicide of ontogenetic omnivores in life‐history intraguild predation systems

The majority of animal species are ontogenetic omnivores, that is, individuals of these species change or expand their diet during life. If small ontogenetic omnivores compete for a shared resource with their future prey, ecological persistence of ontogenetic omnivores can be hindered, although predation by large omnivores facilitates persistence. The coupling of developmental processes between different life stages might lead to a trade‐off between competition early in life and predation later in life, especially for ontogenetic omnivores that lack metamorphosis. By using bioenergetic modeling, we study how such an ontogenetic trade‐off affects ecological and evolutionary dynamics of ontogenetic omnivores. We find that selection toward increasing specialization of one life stage leads to evolutionary suicide of noncannibalistic ontogenetic omnivores, because it leads to a shift toward an alternative community state. Ontogenetic omnivores fail to re‐invade this new state due to the maladaptiveness of the other life stage. Cannibalism stabilizes selection on the ontogenetic trade‐off, prevents evolutionary suicide of ontogenetic omnivores, and promotes coexistence of omnivores with their prey. We outline how ecological and evolutionary persistence of ontogenetic omnivores depends on the type of diet change, cannibalism, and competitive hierarchy between omnivores and their prey.     

Regulation of motoneuron death in the spinal nucleus of the bulbocavernosus.

A sexual dimorphism in the number of motoneurons in the spinal nucleus of the bulbocavernosus (SNB) of rats is engendered by a sex difference in ontogenetic cell death. Testicular secretions, specifically androgenic steroids, reduce SNB motoneuron death in males. The fate of the target muscles generally mirrors that of the motoneurons, and androgens appear to exert their effects upon the target muscles, sparing the motoneurons as a secondary consequence. Treatment with ciliary neurotrophic factor can also spare SNB motoneurons in newborn females, raising the possibility that this factor normally mediates androgen's effect upon motoneuron survival. The ontogeny of calcitonin gene-related peptide immunoreactivity is delayed in SNB cells compared with other motoneurons and is further delayed in the SNB cells of females. In both sexes, calcitonin gene-related peptide is detected after the period of SNB motoneuron death is complete. A sex difference in motoneuron number is also seen in the human homologue of the SNB and, because ontogenetic death of motoneurons in humans overlaps the period of androgen secretion, may arise in a manner similar to that in the rat SNB.     

Dine or Dash?: Ontogenetic Shift in the Response of Yellow Perch to Conspecific Alarm Cues

During their first year of growth yellow perch, Perca flavescens, undergo an ontogenetic niche shift from invertebrate feeding to piscivory. They also undergo a similar shift in their response to heterospecific alarm cues, switching from anti-predator to foraging behaviour. We conducted laboratory trials to determine whether yellow perch experience a comparable ontogenetic shift in their response to conspecific alarm cues. When exposed to either young-of-year (YOY) or adult perch skin extract, YOY perch responded with decreased time in motion and number of feeding attempts as well as increased time spent with spines erect and latency to first feeding attempt, all of which are indicative of an anti-predator response. Adult perch, when exposed to the same cues, responded with increased time spent moving and number of feeding attempts as well as decreased time spent with spines erect and latency to first feeding attempt, indicative of a foraging response. These data suggest that yellow perch undergo an ontogenetic niche shift in response to conspecific alarm cues.     

Ontogenetic diet shifts produce trade‐offs in elemental imbalance in bluegill sunfish

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Regulation and dysregulation of fibrosis in skeletal muscle

In response to skeletal muscle injury, distinct cellular pathways are activated to repair the damaged tissue. Activation and restriction of these pathways must be temporally coordinated in a precise sequence as regeneration progresses if muscle integrity and homeostasis are to be restored. However, if tissue injury persists, as in severe muscular dystrophies, the repair process becomes uncontrolled leading to the substitution of myofibers by a non-functional mass of fibrotic tissue. In this review, we provide an overview of how muscle responds to damage and aging, with special emphasis on the cellular effectors and the regulatory and inflammatory pathways that can shift normal muscle repair to fibrosis development.     

Ontogenetic differentiation of swimming performance in Gilthead seabream (Sparus aurata, Linnaeus 1758) during metamorphosis

The critical swimming speed (U_crit) of gilthead seabream (Sparus aurata, Linnaeus 1875) was studied in two ontogenetic phases, early (13.7-18.7 mm total length, TL) and late metamorphosis (20.4-34.3 mm TL, after the full development of fin meristics and during squamation ontogeny), under four exercise temperatures (15, 20, 25 and 28 °C). Both the exercise temperature and the ontogenetic stage had a significant effect on the relative U_crit (RU_crit) of S. aurata, with the fish of early metamorphosis phase (E group) presenting significantly higher RU_crit than those of the late metamorphosis stage (L group). This ontogenetic shift in swimming performance was accompanied by significant ontogenetic shifts of body shape and of muscle anatomy. Compared to the L group, S. aurata of the E group were characterized by a streamline body shape and significantly higher relative contribution of the slow-red muscle to the cross-sectional area of the body (31.0 ± 1.3% vs 12.0 ± 1.2% in the L group).     

Development of nestedness: host biology as a community process in parasite infracommunities of yellow perch (Perca flavescens (Mitchill)) from Garner Lake, Alberta

Infracommunity data from 60 perch collected from Garner Lake, Alberta, in 1992 were examined to determine whether ontogenetic shifts in host diet or habitat could produce a nested subset pattern of infracommunity structure. The host by parasite matrix showed significant nesting. Host idiosyncratic temperatures, which are indicative of differing "biogeographic histories," were determined primarily by the presence of Ergasilus caeruleus in depauperate communities, or its absence in richer communities, and covaried positively with host age and the associated variables of host length, mass, and infracommunity richness. Idiosyncratic host temperatures did not differ significantly between male and female perch when the effect of age was controlled for by analysis of covariance. Although an ontogenetic diet shift can be ruled out as producing the observed nested pattern, it is possible that the observed nested subset pattern is the result of an ontogenetic habitat shift.     

Ontogenetic changes and developmental adjustments in lactate dehydrogenase isozymes of an obligate air-breathing fish Channa punctatus during deprivation of air access

In air-breathing snakehead Channa punctatus, Ldh-B is expressed at all ontogenetic and developmental stages, while Ldh-A is expressed temporally in pre-hatchlings 12-13 days ahead of bimodal respiration marked by air-breathing. Remarkable differences are observed in the LDH isozyme expression among various ontogenetic and developmental stages upon denying air access. When denied air access, water-breathing larvae show two distinct characteristics: (i) they survive longer than transitory air-breathers due to independence from air-breathing and (ii) there is more transient induction of Ldh-B than Ldh-A. Transition to bimodal breathing, which occurred post-hatching in 15-day old larvae, is coincidental with inducibility of Ldh-A and concomitant down-regulation of Ldh-B. Heart tissue from air-breathing adults denied air access shows a preferential expression of LDH-A subunit and slight down-regulation of LDH-B. Heterotetramers of A and B subunits participate in adjusting LDH levels among those stages which either precede air-breathing switchover, or are subsequent to this transition. The contribution of heterotetramers depends on the stage-specific levels of LDH homotetramers A(4) or B(4). Scaling of muscle mass during growth, tolerance to extended deprivation of air access and induction of Ldh-A are correlated. Response to restoring air contact indicated that advanced air-breathing stages of C. punctatus possess an inherent capacity to sense surface air. In kinetic properties, LDH isozymes of C. punctatus are teleost-like but species specificity is displayed in oxidative potential by cardiac muscle and in L-lactate reduction by skeletal muscle.     

Ontogeny of the Medial Masseter Muscle, Pseudo-Myomorphy, and the Systematic Position of the Gliridae (Rodentia, Mammalia)

Histological serial sections of fetal stages of various rodent taxa have been studied. We have concentrated on the ontogenetic differentiation of the infraorbital region in some hystricomorphs and myomorphs. The glirid taxa Graphiurus, Eliomys, Glis and Muscardinus show a specific mode of development of the medial masseter muscle that is clearly different from the other groups: In early ontogenetic stages, the muscle invariably has its anterior-most origin at the dorsolateral rim of the infraorbital foramen, and only in later fetal stages migrates to the side of the muzzle. In contrast to the glirines, Graphiurus has an aboral origin of the lateral masseter muscle from the beginning, and we consider this as a plesiomorphic state. In all other taxa showing an enlarged masseter medialis, this muscle bundle originates from the anterior portion of the ascending process or even from the premaxillary. We interpret our ontogenetical findings as support for the hypothesis of the monophyly of the Gliroidea and for the concept of `pseudo-myomorphy' of Vianey-Liaud (1985), which was derived from the fossil record. This evidence suggests that the gliroids are probably not members of the Myomorpha, but have acquired myomorphy independently. This conclusion is also in agreement with many molecular studies that suggest closer affinities of glirids with sciurids.     

Ontogenetic shifts in functional morphology of dragonfly legs (Odonata: Anisoptera)

Anisopteran leg functions change dramatically from the final larval stadium to the adult. Larvae use legs mainly for locomotion, walking, climbing, clinging, or burrowing. Adults use them for foraging and grasping mates, for perching, clinging to the vegetation, and for repelling rivals. In order to estimate the ontogenetic shift in the leg construction from the larva to the adult, this study quantitatively compared lengths of fore, mid, and hind legs and the relationships between three leg segments, femur, tibia, and tarsus, in larval and adult Anisoptera of the families Gomphidae, Aeshnidae, Cordulegastridae, Corduliidae, and Libellulidae, represented by two species each. We found that leg segment length ratio as well as ontogenetic shift in length ratios was different between families, but rather similar within the families. While little ontogenetic shift occurred in Aeshnidae, there were some modifications in Corduliidae and Libellulidae. The severest shift occurred in Gomphidae and Cordulegastridae, both having burrowing larvae. These two families form a cluster, which is in contrast to their taxonomic relationship within the Anisoptera. Cluster analysis implies that the function of larval legs is primarily responsible for grouping, whereas adult behavior or the taxonomic relationships do not explain the grouping. This result supports the previous hypothesis about the convergent functional shift of leg characters in the dragonfly ontogenesis.     

Growth dynamics of juvenile loggerhead sea turtles undergoing an ontogenetic habitat shift

Ontogenetic niche theory predicts that individuals may undergo one or more changes in habitat or diet throughout their lifetime to maintain optimal growth rates, or to optimize trade-offs between mortality risk and growth. We combine skeletochronological and stable nitrogen isotope (δ¹⁵N) analyses of sea turtle humeri (n = 61) to characterize the growth dynamics of juvenile loggerhead sea turtles (Caretta caretta) during an oceanic-to-neritic ontogenetic shift. The primary objective of this study was to determine how ontogenetic niche theory extends to sea turtles, and to individuals with different patterns of resource use (discrete shifters, n = 23; facultative shifters n = 14; non-shifters, n = 24). Mean growth rates peaked at the start of the ontogenetic shift (based on change in δ¹⁵N values), but returned to pre-shift levels within 2 years. Turtles generally only experienced 1 year of relatively high growth, but the timing of peak growth relative to the start of an ontogenetic shift varied among individuals (before, n = 14; during, n = 12; after, n = 8). Furthermore, no reduction in growth preceded the transition, as is predicted by ontogenetic niche theory. Annual growth rates were similar between non-transitioning turtles resident in oceanic and neritic habitats and turtles displaying alternative patterns of resource use. These results suggest that factors other than maximization of size-specific growth may more strongly influence the timing of ontogenetic shifts in loggerhead sea turtles, and that alternative patterns of resource use may have limited influence on somatic growth and age at maturation in this species.     

Ontogenetic variation in digestion by the herbivorous lizard Ctenosaura pectinata

I tested the hypothesis that an animal with an ontogenetic diet shift must have different digestive efficiencies for foods that correspond to its diet shift, so that nutrient and energy extraction are maximized. The iguanine lizard Ctenosaura pectinata undergoes an ontogenetic diet shift from eating insects as a juvenile to plants as an adult. When fed six different pure foods from the natural diets of different age classes, C. pectinata assimilated nutrients and energy differently depending on food type and age class. Extraction of energy and nutrients in insect larvae was maximized by juvenile lizards. Calcium, phosphorus, and energy were readily assimilated from flowers and fruit by immature and adult lizards. Magnesium levels were highest in leaves and were extracted by immature and adult lizards, but xenobiotic effects of one plant leaf (Croton suberosus), eaten by adults, killed juvenile lizards. Although juvenile C. pectinata ate some flowers (Senna wislizenii) naturally, they were less efficient at digesting cell walls from these plant parts than were older lizards. Ontogenetic changes in ctenosaur digestive physiology were not the result of a trade-off involving ecological costs of different foods; rather, each age class preferred a diet that maximized its physiological benefit.     

A quantitative method for inferring locomotory shifts in amniotes during ontogeny,its application to dinosaurs and its bearing on the evolution of posture

Evolutionary transitions between quadrupedal and bipedal postures are pivotal to the diversification of amniotes on land, including in our own lineage (Hominini). Heterochrony is suggested as a macroevolutionary mechanism for postural transitions but understanding postural evolution in deep time is hindered by a lack of methods for inferring posture in extinct species. Dinosaurs are an excellent natural laboratory for understanding postural transitions because they demonstrate at least four instances of quadrupedality evolving from bipedality, and heterochronic processes have been put forward as an explanatory model for these transitions. We extend a quantitative method for reliably inferring posture in tetrapods to the study of ontogenetic postural transitions using measurements of proportional limb robusticity. We apply this to ontogenetic series of living and extinct amniotes, focusing on dinosaurs. Our method correctly predicts the general pattern of ontogenetic conservation of quadrupedal and bipedal postures in many living amniote species and infers the same pattern in some dinosaurs. Furthermore, it correctly predicts the ontogenetic postural shift from quadrupedal crawling to bipedal walking in humans. We also infer a transition from early ontogenetic quadrupedality to late-ontogenetic bipedality in the transitional sauropodomorph dinosaur Mussaurus patagonicus and possibly in the early branching ceratopsian Psittacosaurus lujiatunensis but not in the sauropodomorph Massospondylus carinatus. The phylogenetic positions of these ontogenetic shifts suggest that heterochrony may play a role in the macroevolution of posture, at least in dinosaurs. Our method has substantial potential for testing evolutionary transitions between locomotor modes, especially in elucidating the role of evolutionary mechanisms like heterochrony.     

Ontogeny, diet shifts, and nutrient stoichiometry in fish

Most stoichiometric models do not consider the importance of ontogenetic changes in body nutrient composition and excretion rates. We quantified ontogenetic variation in stoichiometry and diet in gizzard shad, Dorosoma cepedianum , an omnivorous fish with a pronounced ontogenetic diet shift; and zebrafish, Danio rerio, grown in the lab with a constant diet. In both species, body stoichiometry varied considerably along the life cycle. Larval gizzard shad and zebrafish had higher molar C:P and N:P ratios than larger fish. Variation in body nutrient ratios was driven mainly by body P, which increased with size. Gizzard shad body calcium content was highly correlated with P content, indicating that ontogenetic P variation is associated with bone formation. Similar trends in body stoichiometry of zebrafish, grown under constant diet in the laboratory, suggest that ontogeny (e.g. bone formation) and not diet shift is the main factor affecting fish body stoichiometry in larval and juvenile stages. The N:P ratio of nutrient excretion also varied ontogenetically in gizzard shad, but the decline from larvae to juveniles appears to be largely associated with variation in the N:P of alternative food resources (zooplankton vs detritus) rather than by fish body N:P. Furthermore, the N:P ratio of larval gizzard shad excretion appears to be driven more by the N:P ratio at which individuals allocate nutrients to growth, more so than static body N:P, further illustrating the need to consider ontogenetic variation. Our results thus show that fish exhibit considerable ontogenetic variation in body stoichiometry, driven by an inherent increase in the relative allocation of P to bones, whereas ontogenetic variation in excretion N:P ratio of gizzard shad is driven more by variation in food N:P than by body N:P.