The low spin - high spin equilibrium in the S2-state of the water oxidizing enzyme

In Photosystem II (PSII), the Mn₄CaO₅-cluster of the active site advances through five sequential oxidation states (S₀ to S₄) before water is oxidized and O₂ is generated. Here, we have studied the transition between the low spin (LS) and high spin (HS) configurations of S₂ using EPR spectroscopy, quantum chemical calculations using Density Functional Theory (DFT), and time-resolved UV-visible absorption spectroscopy. The EPR experiments show that the equilibrium between S₂^LS and S₂^HS is pH dependent, with a pK_a?≈?8.3 (n?≈?4) for the native Mn₄CaO₅ and pK_a?≈?7.5 (n?≈?1) for Mn₄SrO₅. The DFT results suggest that exchanging Ca with Sr modifies the electronic structure of several titratable groups within the active site, including groups that are not direct ligands to Ca/Sr, e.g., W1/W2, Asp61, His332 and His337. This is consistent with the complex modification of the pK_a upon the Ca/Sr exchange. EPR also showed that NH₃ addition reversed the effect of high pH, NH₃-S₂^LS being present at all pH values studied. Absorption spectroscopy indicates that NH₃ is no longer bound in the S₃Tyr_Z state, consistent with EPR data showing minor or no NH₃-induced modification of S₃ and S₀. In both Ca-PSII and Sr-PSII, S₂^HS was capable of advancing to S₃ at low temperature (198?K). This is an experimental demonstration that the S₂^LS is formed first and advances to S₃via the S₂^HS state without detectable intermediates. We discuss the nature of the changes occurring in the S₂^LS to S₂^HS transition which allow the S₂^HS to S₃ transition to occur below 200?K. This work also provides a protocol for generating S₃ in concentrated samples without the need for saturating flashes.     

Conformational study of calf brain tubulin

The conformation of calf brain tubulin has been monitored by circular dichroism, optical rotatory dispersion, and spectrophotometric titration as a function of pH, temperature, ligand concentrations, and denaturants. At pH 7, calf brain tubulin maintains its structural integrity between 5 and 37 °C as determined by circular dichroism. Furthermore, the presence of MgCl ₂ up to 1.6 × 10^?2m does not induce any observable changes in the circular dichroism spectra, nor does 10^?4m CaCl₂. With increasing pH, the spectral data can best be described as a gradual loosening of the secondary structure between pH 7 and 9. Both spectral and titrimetric data suggest a major unfolding of tubulin between pH 9 and 10. The apparent pK of tyrosine shifts from 10.85 to 9.98 upon transferring from buffer to 6 m guanidine hydrochloride, indicating that at least 14 of the 15 tyrosine groups are not fully accessible to protons in the native protein. The single disulfide bridge in calf brain tubulin helps to maintain a domain which is highly resistant to unfolding by denaturants.     

Ferric and manganic superoxide dismutases in Euglena gracilis.

Iron-containing superoxide dismutase was found in the soluble fraction from Euglena gracilis and Mn-superoxide dismutase was found in the thylakoid-bound form. Two major Fe-superoxide dismutases were isolated from the soluble fraction in the homogeneous state. Their absorption spectra, molecular weights, subunit structures, and metal contents resemble those of the Fe-enzymes from procaryotes. However,the Euglena enzymes are more sensitive to heating, to denaturants, and to H₂O₂ and less sensitive to azide than are the procaryote enzymes. The amino acid composition of the Euglena enzyme differs substantially from the compositions of the enzymes from procaryotes.     

Magnesium spin state determines the energetics of an adenosinetriphosphate molecule

The molecular dynamics method (density functional theory) DFT:B3LYP (6-3IG** basis set, t = 310 K) was used to study interactions between a molecule of adenosinetriphosphate (ATP) (ATP subsystem) and the [Mg(H₂O)₆]²⁺ magnesium cofactor (Mg subsystem) in an aqueous medium simulated by 78 water molecules in the singlet (S) and triplet (T) states. Potential energy surfaces (PESs) for the S (lowest in energy) and T states (highest in energy) are significantly separated in space. Motion along them directs the Mg complex either to oxygen atoms of the γ-β-phosphate groups (O1–O2) (S state of PES) or to oxygen atoms of the β-α-phosphate groups (O2–O3) (T state of PES). Chelation of the γ-β- and β-α-phosphates leads to formation of a stable low-energy ([Mg(H₂O)₄-(OI-O2)ATP]^2?) complex or a metastable high-energy ([Mg(H₂O)₂-(O2–O3)ATP]^2?) complex, respectively, which differ in number of water molecules surrounding the Mg atom. Intersection of two T PESs is accompanied by formation of an unstable state characterized by redistribution of spins between the Mg and ATP subsystems. This state, being sensitive to interaction with the Mg nuclear spin (²⁵Mg), induces an unpaired electron spin, which initiates the ATP cleavage by the ion-radical mechanism, yielding a reactive ion radical of adenosinemonophosphate (·AMP^?), which was earlier found experimentally by the method of chemically induced dynamic nuclear polarization (CIDNP). Biological aspects of the results obtained are discussed.     

Susceptibility Test of Two Ca2+-ATPase Conformers to Denaturants and Polyols to Outline Their Structural Difference

To determine the effect of denaturants [guanidine hydrochloride (GdnHCl) and urea] and polyols [with various molecular masses (62.1–600)] on calcium binding at the two hypothesized conformers (A and B forms) of the chemically equivalent sarcoplasmic reticulum Ca²⁺-ATPase, which bind two calcium ions in different manners, we examined the effect of these reagents on the calcium dependence of ATP-supported phosphorylation of the ATPase molecules and of their calcium-activated, acetyl phosphatate hydrolytic activity. (1) GdnHCl (~0.05 M) and urea (~0.5 M) increased the apparent calcium affinity (K _0.5) of 2–6 μM of noncooperative binding [Hill coefficient (n _H) ~ 1] of the A form to 10–40 μM. (2) The employed polyols transformed the binding of the A form into cooperative binding (n _H ~ 2), accompanying the approach of its K _0.5 value to that (K _0.5 = 0.04–0.2 μM) of the cooperative binding (n _H ~ 2) of the B form; the transition concentration (0.025–2 M) of the polyols, above which such transformation occurs, was in inverse relation to their molecular mass. (3) The binding of the B form was resistant to these denaturants and polyols. Based on these data, a structural model of the two forms, calcium-binding domains of which are loosely and compactly folded, is presented.     

Surface structure of the two porcine low-density lipoprotein subclasses — a spin labelling study

Porcine low-density lipoprotein (LDL) subclasses were spin-labelled at both protein and lipid sites. The surface structures of the two subclasses were compared. E.s.r. spectra of stearic acid spin-labels [I(m/n)] and of androstanol spin-label indicated more restricted motion of the labels in LDL₂ (d = 1.063?1.090 g/ml) than in LDL₁ (d = 1.020?1.063 g/ml). Thermotropic change in the surface structure was found in both subclasses by both protein and lipid spin-labels, but at lower temperature in LDl₁, than in LDL₂. These results indicate the relationship between the size and the dynamics of the lipid components in the surface layer of the LDL subclasses.     

Hen egg white as a feeder protein for lipase immobilization

Enzyme stabilization via immobilization is one of the preferred processes as it provides the advantages of recovery and reusability. In this study, Thermomyces lanuginosus lipase has been immobilized through crosslinking using 2% glutaraldehyde and hen egg white, as an approach towards CLEA preparation. The immobilization efficiency and the properties of the immobilized enzyme in terms of stability to pH, temperature, and denaturants was studied and compared with the free enzyme. Immobilization efficiency of 56% was achieved with hen egg white. The immobilized enzyme displayed a shift in optimum pH towards the acidic side with an optimum at pH 4.0 whereas the pH optimum for free enzyme was at pH 6.0. The immobilized enzyme was stable at higher temperature retaining about 83% of its maximum activity as compared to the free enzyme retaining only 41% activity at 70 °C. The denaturation of lipase in free form was rapid with a half-life of 2 h at 60 °C and 58 min at 70 °C as compared to 12 h at 60 °C and 2 h at 70 °C for the immobilized enzyme. The effect of denaturants, urea and guanidine hydrochloride on the free and immobilized enzyme was studied and the immobilized enzyme was found to be more stable towards denaturants retaining 74% activity in 8 M urea and 98% in 6 M GndHCl as compared to 42% and 33% respectively in the case of free enzyme. The apparent K_m (2.08 mM) and apparent V_max (0.95 μmol/min) of immobilized enzyme was lower as compared to free enzyme; K_m (8.0 mM) and V_max (2.857 μmol/min). The immobilized enzyme was reused several times for the hydrolysis of olive oil.     

Ferromagnetic and antiferromagnetic spin coupling in Ni4O4 cubane-type clusters with 4-amino-3,5-bis(hydroxymethyl)-1,2,4-triazole as a ligand. The x-ray structure of a new dumbbell-like double cubane cluster

The synthesis, spectroscopic and magnetic properties of two nickel clusters are described, Ni₈(NCS)₈(Hahmt)₆(H₂ahmt)₄(ahmt)(H₂O)₁₂ (A) and Ni₄(Hahmt)₄(H₂ahmt)₂(NCS)₄(H₂O)₄ (B) (H₂ahmt = 4-amino-3,5-bis(hydroxymethyl)-1,2,4-triazole). The X-ray structure of A has been determined. The compound crystallizes in the space group C2/c, a = 25.458(2), b = 15.466(2), c = 26.959(3) Å, β = 90.648(5)°. The structure was refined to R = 0.108 for 4169 observed reflections. The structure consists of two Ni₄O₄ cubane-type clusters, each consisting of four nickel atoms, three singly deprotonated and one doubly deprotonated ligands. Hahmt coordinates as a bidentate chelating ligand through its triazole-N₁ and its 3-oxymethyl-part. The doubly deprotonated ligand chelates in a bis-bidentate manner to two Ni₄ clusters. In this way dumbbell-like pairs of ligand bridged cubanes are formed. Along two opposite diagonals of the Ni₄O₄ cubanes a neutral ligands, coordinating through its triazole-N₁,N₂ atoms, forms a bridge between two nickel ions. The NiN₃O₃ chromophore is completed by a monodentate N-coordinating thiocyanate anion. Compound B, for which only partial structure determination was possible, has the same Ni₄O₄ cubane-type cluster, however, without the bridging ligand between the cubanes. The two types of NiNi bridges result in two unequivalent superexchange pathways. In the compounds both ferromagnetic and antiferromagnetic interaction pathways are present, resulting in an overall antiferromagnetic behaviour. The nature of the interaction for the different pathways is related to the observed NiONi angles. The intercluster exchange is much larger through the triazole bridge in A than it is in B, where only hydrogen bridges keep the clusters together.     

Preparation,crystal structure and thermal behaviour of bischromatodihydroxobis-(pyridine)tricopper(II) [Cu3(CrO4)2(OH)2(C5H5N)2]

The title compound was prepared by slow crystallization from a hot aqueous solution of copper(II)- dichromate and pyridine. The structure determination was performed at room temperature on a single crystal in the triclinic space group P$\text{1}$, a = 5.378(1), b = 5.619(1), c = 13.569(2) Å, α = 93.32(1), β = 100.25(1), γ=98.45(1)°. Using 2026 reflections with F_o² > (F_o²) obtained on a CAD-4 single crystal diffractometer the structure was solved by conventional Patterson and Fourier methods and full matrix least-squares refinement to R = 0.047. The structure consists of complex chains built up from two different (4 + 2) distorted copper(II) octahedra sharing common edges. These chains are linked via OCrO bonds thus forming a two-dimensional infinite network. The pyridine rings extending into the space between these layers are disordered due to rotation around the CuN bond. In the course of the refinement two favoured positions with occupation probabilities 50:50 percent were found. During thermal decomposition the compound loses pyridine and water followed by a release of oxygen to yield poly- crystalline CuCr₂O₄ and CuO. An intermediate phase with empirical formula Cu₃O(CrO₄)₂ was detected by X-ray powder diffraction and its unit cell parameters were determined.     

Crystal structure at 87 K of sodium α-l-guluronate dihydrate

X-Ray data collected at 87 K showed crystals of sodium α-l-guluronate dihydrate (C₆H₉O₇Na · 2 H₂O) to be orthorhombic, P2₁2₁2₁ with a = 7.591(2), b = 18.884(5), c = 6.842(2) Å, and Z = 4. The structure was solved by direct methods, and full-matrix least-squares refinement based on 1587 F_o yielded R = 0.043 and R_w = 0.033. The structure analysis indicates partial anomeric disorder with α:β ～90:10. The guluronate ring has the ¹C₄(l) conformation. Sodium binds two translation-equivalent guluronate units and one water molecule in a primary five-fold coordination. The complexing oxygen functions, which include all axial hydroxyl groups and one carboxylate oxygen atom in the guluronate ring, describe a distorted trigonal bipyramid. A prominent feature of the crystal structure is the stacks of sodium atoms and guluronate residues in alternating sequence along the c axis. The stacks are held together by an intricate system of hydrogen bonds involving all oxygen atoms in the structure. The water molecules play an important role in this system both as hydrogen donors and acceptors.     

Effect of colchicine on the osmotic water flow across the toad urinary bladder

Osmotic water movement across the toad urinary bladder in response to both vasopressin and cyclic AMP was inhibited by 10^?5 to 10^?4 M colchicine on the serosal but not on the mucosal side. This inhibitory effect was found to be time- and dose-dependent. Colchicine alone did not change basal osmotic flow and a baseline of the short-circuit current (I_sc) and also did not affect a vasopressin-induced rise of the I_sc. The inhibitory effect was not prevented by the addition of pyruvate. The osmotic water movement produced by 360 mM Urea (mucosal), 360 mM mannitol (serosal) or 2 μg/ml amphotericin B (mucosal), was not affected by 10^?4 M colchicine. These results suggest that colchicine inhibits some biological process subsequent to the formation of cyclic AMP except a directional cytoplasmic streaming process where microtubules may be involved.     

Factors Affecting the Water-sensitive Phase of Flowering in the Short Day Plant Lemna perpusilla

The flowering of Lemna perpusilla strain 6746 is inhibited by daily transfers to water for short periods during a sensitive phase. Supplementing the water with Ca(NO₃)₂ partially reverses the inhibition of flowering while MgSO₄ increases the inhibition. The inhibition by MgSO₄ is overcome by low concentrations of Ca(NO₃)₂. Flower-promoting activity was detected in water and in MgSO₄ solutions that had been incubated with plants under dark but not light conditions. The prevention of this effect by light appears to be photosynthetic rather than to depend on phytochrome. The activity is destroyed by autoclaving but not by brief boiling. This loss of a flower-promoting material may explain the inhibiting effect on flowering by transfers to water.     

Effects of solvent viscosity and different guanidine salts on the kinetics of ribonuclease A chain folding

The kinetics of folding of the two forms of unfolded ribonuclease A have been measured as a function of solvent viscosity by adding either glycerol or sucrose. The aim is to find out if either reaction is rate limited by segmental motion whose rate depends on external friction. The fast folding reaction (U₂ ? N) is known to be the direct folding process, and the slow folding reaction (U₁ ? N) is known to be rate limited by an interconversion between two forms (U₁ ? U₂) which are present after unfolding in strongly denaturing conditions. No dependence on solvent viscosity is found, either for the direct folding reaction or for the interconversion reaction. Each folding reaction has also been tested to see if its rate depends on the concentration of one or more partly folded intermediates, by adding denaturants destabilize any partly folded structures. Different guanidine salts are used as denaturants to vary the denaturing effectiveness of the salt while holding the guanidinium ion concentration constant. The rates both of the direct folding reaction and of the interconversion reaction decrease in relation to the denaturing effectiveness of the salt. However, there is a basic difference between the responses of the fast and slow folding reactions to low concentrations of denaturants. Although each folding reaction produces native protein, there is an 800-fold decrease in the rate of the fast folding reaction in 1M guanidine thiocyanate and only a 13-fold decrease in the rate of the slow folding reaction. This is consistent with the fast reaction being the direct folding process and the slow reaction being rate limited by the initial conversion of the slowrefolding to the fast-refolding form. Both the lack of viscosity dependence and the effects of denaturants indicate that the formation of structure is rate limiting in the direct folding reaction, U₂ ? N. The failure to find a viscosity dependence for the interconversion reaction, U₁ ? U₂, indicates that in this reaction also friction-limited segmental motion is not the rate-limiting process. Since the U₁ ? U₂ interconversion still occurs when the polypeptide chain is completely unfolded, the surprising result is that its rate in refolding conditions depends significantly on a reaction intermediate which is “denatured” by guanidine salts.     

Muon spin relaxation studies of iron(II) spin crossover complexes

A series of model iron(II) spin crossover complexes have been investigated by temperature dependent muon spin relaxation (μSR) techniques at ISIS, UK. The thermally induced spin crossover in these materials could be monitored by following the initial asymmetry parameter, a₀, in zero-field. We established that the behavior of a₀ correlates well with the shape of the spin crossover curve derived from magnetic susceptibility measurements, whether hysteretic, smooth, or abrupt. In addition, the longitudinal field dependence of a₀ not only provides information on the nature of the muonic species but also on their interactions and respective localization in the crystal lattice. Useful insights to the electronic structure and dynamic phenomena of these model spin crossover complexes can be derived.     

Experimental spin density in the high spin ground state of the Fe8pcl cluster

The induced spin density was determined by polarised neutron diffraction in the S = 10 ground state of [(tacn)₆Fe₈O₂(OH)₁₂]Br_4.3(ClO₄)_3.7 · 6H₂O, Fe₈pcl, which differently from the bromide analogous, Fe₈Br_8, presents a centre of symmetry. The relative spin arrangement is in agreement with the model proposed from classical magnetic measurements and with the previous spin density study in the noncentrosymmetrical Fe₈Br₈ compound. The experimental spin populations on the iron atoms are in good quantitative agreement with calculations using exact diagonalisation of the exchange Hamiltonian with experimental J values obtained from magnetic susceptibility measurements on Fe₈Br₈. This determination confirms that the spin density determination provides a valuable evaluation of the relative strengths (and sign) of the intracluster magnetic interactions and that the dissymmetry observed on the spin populations in the Fe₈Br₈ compound with respect to quasi-D₂ symmetry of the molecular frame was an artefact due to the data refinement method for non centrosymmetrical structures.     

Tuning redox and spin state properties of Fe(II) N-heterocyclic complexes via electronic/steric influence on metal-ligand binding

A series of complexes with the general formula [Fe(L)₂]²⁺, where L represents the tridentating 6-(N-3,5-dimethylpyrazolyl)2,2^′-bipyridine (L⁴); 6-(N-pyrazolyl-1-ylmethyl)-2,2^′-bipyridine (L⁵); and 6-(N-3,5-dimethylpyrazolyl-1-ylmethyl)-2,2^′-bipyridine (L⁶), were prepared and characterized. The room temperature solution magnetic susceptibility and redox properties of these compounds were investigated as a function of stepwise variation in the ligand structure. The Fe(III/II) couple was characterized by way of cyclic voltammetry using aprotic solvent conditions (acetonitrile) where each complex was observed to have reversible behavior. NMR methodology was used for measuring the magnetic susceptibilities where both [Fe(L⁴)₂]²⁺ and Fe(L⁵)₂]²⁺ exhibited diamagnetic low spin behavior; however, [Fe(L⁶)₂]²⁺ measured a μ_eff of 4.1 Bohr-magnetons indicating spin equilibrium predominantly in the high spin state.     

Studies on groundnut proteins. V. Physico-chemical properties of arachin prepared by different methods.

ORD,¹ CD, and fluorescence spectra of arachin prepared by Tombs' (Biochem. J., 96, 119; 1965), Dawson's (Anal. Biochem., 41, 305; 1971) or Shetty and Rao's (Anal. Biochem., 62, 108; 1974) procedure were measured; the effect of denaturants such as SDS, GuHCl, and acid was also determined. ORD and CD spectra showed differences, whereas fluorescence spectra did not show any difference. The effect of the denaturants was the same on the three arachins. At low concentrations of GuHCl (<2 m), the denaturant was bound by the protein molecule without causing any conformational change. The binding affinity varied among the arachins.     

THE EFFECT OF CERTAIN ELECTROLYTES AND NON-ELECTROLYTES ON PERMEABILITY OF LIVING CELLS TO WATER

1. Permeability to water in unfertilized eggs of the sea urchin, Arbacia punctulata, is found to be greater in hypotonic solutions of dextrose, saccharose and glycocoll than in sea water of the same osmotic pressure. 2. The addition to dextrose solution of small amounts of CaCl₂ or MgCl₂ restores the permeability approximately to the value obtained in sea water. 3. This effect of CaCl₂ and MgCl₂ is antagonized by the further addition of NaCl or KCl. 4. It is concluded that the NaCl and KCl tend to increase the permeability of the cell to water, CaCl₂ and MgCl₂ to decrease it. 5. The method here employed can be used for quantitative study of salt antagonism.     

Structural characteristics of thermostable immunogenic outer membrane protein from Salmonella enterica serovar Typhi

In this work, we explored the acid-induced unfolding pathway of non-porin outer membrane protein (OMP), an immunogenic protein from Salmonella Typhi, by monitoring the conformational changes over a pH range of 1.0–7.0 by circular dichroism, intrinsic fluorescence, ANS binding, acrylamide quenching, and dynamic light scattering. The spectroscopic measurements showed that OMP in its native state at pH 7.0 exists in more stable and compact conformation. In contrast, at pH 2.0, OMP retains substantial amount of secondary structure, disrupted side chain interactions, increased hydrodynamic radii, and nearly four-fold increase in ANS fluorescence with respect to the native state, indicating that MG state exists at pH 2.0. Quenching of tryptophan fluorescence by acrylamide further confirmed the accumulation of a partially unfolded state between native and unfolded state. The effect of pH on the conformation and thermostability of OMP points towards its heat resistance at neutral pH (T _m?~?69 °C at pH 7.0, monitored by change in MRE_{222 nm}). Acid unfolded state was also characterized by the lack of a cooperative thermal transition. All these results suggested that acid-induced unfolded state of OMP at pH 2.0 represented the molten globule state. The chemical denaturation studies with GuHCl and urea as denaturants showed dissimilar results. The chemical unfolding experiments showed that in both far-UV CD and fluorescence measurements, GuHCl is more efficient than urea. GuHCl is characterized by low C _m (~1 M), while urea is characterized by high C _m (~3 M). The fully unfolded states were reached at 2 M GuHCl and 4 M urea concentration, respectively. This study adds to several key considerations of importance in the development of therapeutic agents against typhoid fever for clinical purposes.     

Monomeric Banana Lectin at Acidic pH Overrules Conformational Stability of Its Native Dimeric Form

Banana lectin (BL) is a homodimeric protein categorized among jacalin-related family of lectins. The effect of acidic pH was examined on conformational stability of BL by using circular dichroism, intrinsic fluorescence, 1-anilino-8-napthalene sulfonate (ANS) binding, size exclusion chromatography (SEC) and dynamic light scattering (DLS). During acid denaturation of BL, the monomerization of native dimeric protein was found at pH 2.0. The elution profile from SEC showed two different peaks (59.65 ml & 87.98 ml) at pH 2.0 while single peak (61.45 ml) at pH 7.4. The hydrodynamic radii (R _h) of native BL was 2.9 nm while at pH 2.0 two species were found with R _h of 1.7 and 3.7 nm. Furthermore at, pH 2.0 the secondary structures of BL remained unaltered while tertiary structure was significantly disrupted with the exposure of hydrophobic clusters confirming the existence of molten globule like state. The unfolding of BL with different subunit status was further evaluated by urea and temperature mediated denaturation to check their stability. As inferred from high C_m and ΔG values, the monomeric form of BL offers more resistance towards chemical denaturation than the native dimeric form. Besides, dimeric BL exhibited a Tm of 77°C while no loss in secondary structures was observed in monomers even up to 95°C. To the best of our knowledge, this is the first report on monomeric subunit of lectins showing more stability against denaturants than its native dimeric state.