Temperature Dependence of Methane Production in Tropical Rice Soils

Although CH 4 production is sensitive to temperature, it is not clear how temperature controls CH 4 production directly versus the production of organic substrates that methanogens convert into CH 4 . Therefore, this study was done to better understand how CH 4 production in rice paddy soil responded to temperature when the process was not limited by the availability of substrates. In a laboratory-incubation study using three Indian rice soils under flooded conditions, the effect of temperature on CH 4 production was examined. CH 4 production in acid sulphate, laterite, and alluvial soil samples under flooded conditions distinctly increased with increase in temperature from 15°C to 35°C. Laterite and acid sulphate soils produced distinctly less CH 4 than alluvial soils. CO 2 production increased with increase in temperature in all the soils. The readily mineralizable carbon C and Fe 2+ contents in soils were least at 15°C and highest at 35°C, irrespective of soil type. Likewise, a significant correlation existed between microbial population (methanogens and sulphate reducers) and CH 4 production. Comparing the temperature coefficients ( Q 10 ) for methane production within each soil type at low (15°C-25°C) and medium (25°C-35°C) temperature intervals revealed that these values were not uniform for both alluvial and laterite soils. But acid sulphate soil had Q 10 values that were near 2 at both temperature intervals. When these soil samples were amended with substrates (acetate, H 2 -CO 2 , and rice straw), there were stimulatory effects on methane production rates and consequently on the Q 10 values. The pattern of temperature coefficients was characteristic of the soil type and the nature of substrates used for amendment.     

Effect of various anionic species on net methane production in flooded rice soils

In a laboratory incubation study, effect of various anions on net methane production in two rice soils (alluvial and acid sulphate) under flooded conditions was examined. Methane production was considerable in alluvial soil and almost negligible in acid sulphate soil, albeit with a higher density of viable methanogens, during 30-day incubation without salts. Sodium salts of hydroxide and phosphate further stimulated methane production in alluvial soil and marginally in acid sulphate soil. But, addition of sodium molybdate, a selective inhibitor of sulphate-reducing bacteria, increased the production of methane in acid sulphate soil. In contrast, nitrite, nitrate, sulphite and sulphate suppressed the production of methane in both soils. Acetate served as an excellent substrate for methanogenesis in alluvial soil, but not in acid sulphate soil. Succinate and citrate also stimulated methane production especially in alluvial soil, but after a longer lag. In acid sulphate soil, most of the added carbon in the form of sodium salts of carboxylic acids was converted to CO2 and not methane, which is consistent with their preferential use by the sulphate-reducing bacteria. In general, none of the amendments could increase production of methane in acid sulphate soil to the same level as in alluvial soil.     

Nitrogen fixation (C2H2 reduction) in soil samples from rhizosphere of rice grown under alternate flooded and nonflooded conditions

Summary In a greenhouse study the influence of alternate flooded and nonflooded conditions on the N₂-ase activity of rice rhizosphere soil was investigated by C₂H₂ reduction assay. The soil fraction attached to roots represent the rhizosphere soil. Soil submergence always accelerated N₂-ase and this effect was more pronounced in planted system. Moreover, rice plant exhibited phase-dependent N₂-ase with a maximum activity at 60 days after transplanting. The alternate flooded and nonflooded regimes resulted in alterations of the N₂-ase activity. Thus, the N₂-ase activity increased following a shift from nonflooded to flooded conditions, but the activity decreased when the flooded soil was returned to nonflooded condition by draining. However, the differential influence of the water regime on N₂-ase was not marked in prolonged flooded-nonflooded cycles. Microbial analysis indicated the stimulation of different groups of free-living and associative N₂-fixing microorganisms depending on the water regime.     

Sesbania herbacea–Rhizobium huautlense Nodulation in Flooded Soils and Comparative Characterization of S. herbacea-Nodulating Rhizobia in Different Environments

Abstract The nodulation of S. herbacea was compared under flooded and non-flooded conditions in two different soils. One soil was from a flooded field in Sierra de Huautla, the native habitat of this legume, while the other soil was from a well-drained field in Cuernavaca, where rhizobia were found to nodulate the introduced S. herbacea plants. Nodulation of the plants was completely eliminated by flooding in the Cuernavaca soil, whereas nodules were obtained in the same soil under non-flooded conditions. In contrast, nodules were formed in Huautla soil under both flooded and non-flooded conditions. Most isolates, except isolate HS2, from Huautla soil and water were identified as R. huautlense by colony morphology, growth rate, PCR-RFLP of 16S rRNA genes, MLEE, cellular plasmid contents, and RFLP of nifH and nodDAB genes. Isolate HS2 was identified as Mesorhizobium sp. Isolates from Cuernavaca soil were different from R. huautlense in many aspects and were classified into five rDNA types within the genera Mesorhizobium, Rhizobium, and Sinorhizobium by PCR-RFLP of 16S rRNA genes. R. huautlense is a water Rhizobium species. Growth by denitrification under oxygen limitation or with ethanol was observed for R. huautlense bacteria but not for the isolates from Cuernavaca. In an interstrain nodulation competitive assay under both flooded and non-flooded conditions, R. huautlense strain S02 completely inhibited the nodulation of Mesorhizobium sp. Sn2, an isolate from Cuernavaca. From these results, we conclude that R. huautlense has the unique ability to nodulate S. herbacea not only in flooded soils, but in non-flooded soils as well. Received: 16 August 1999; Accepted: 28 December 1999; Online Publication: 13 June 2000     

Absorption of molecular urea by rice under flooded and non-flooded soil conditions

A pot experiment was conducted with rice to study the relative absorption of urea in molecular form compared to the other forms of N produced in soil from the applied urea. A method involving application of ¹⁴C-labelled urea and ¹⁵N-labelled urea alternately in two splits was used to quantify the absorption of molecular urea and other forms of N formed from it. Biomass production and N uptake were greater in plants grown under flooded soil conditions than in plants grown under non-flooded (upland) conditions. Absorption of N by rice increased with increasing rate of urea application up to 250 mg pot⁻¹ and declined thereafter. The absorption of urea from the flooded soil constituted 9.4% of total N uptake from applied N compared to only 0.2% from the non-flooded. Under submerged conditions, absorption of urea from topdressing was about twice that from basal application at planting. High water solubility of the fertilizer and better developed rice root system might have enhanced the absorption of molecular urea by flooded rice, especially from topdressing. Thus, in the flooded rice system, the direct absorption of molecular urea from topdressing accounted for 6.3% of the total N uptake from added urea. Under upland condition, it was 0.12%. This revised version was published online in June 2006 with corrections to the Cover Date.     

Biological N2 fixation by heterotrophic and phototrophic bacteria in association with straw

Much of the crop residues, including cereal straw, that are produced worldwide are lost by burning. Plant residues, and in particular straw, contain large amounts of carbon (cellulose and hemicellulose) which can serve as substrates for the production of microbial biomass and for biological N₂ fixation by a range of free-living, diazotrophic bacteria. Microorganisms with the dual ability to utilise cellulose and fix N₂ are rate, but some strains that utilize hemicellulose and fix N₂ have been found. Generally, cellulolysis and diazotrophy are carried out by a mixed microbial community in which N₂-fixing bacteria utilise cellobiose and glucose produced from straw by cellulolytic microorganisms. N₂-fixing bacteria include heterotrophic and phototrophic organisms and the latter are apparently more prominent in flooded soils such as rice paddies than in dryland soils. The relative contributions of N₂ fixed by heterotrophic diazotrophic bacteria compared with cyanobacteria and other phototrophic bacteria depend on the availability of substrates from straw decomposition and on environmental pressures. Measurements of asymbiotic N₂ fixation are limited and variable but, in rice paddy systems, rates of 25 kg N ha^-1 over 30 days have been found, whereas in dryland systems with wheat straw, in situ measurements have indicated up to 12 kg N ha^-1 over 22 days. Straw-associated N₂ fixation is directly affected by environmental factors such as temperature, moisture, oxygen concentration, soil pH and clay content as well as farm management practices. Modification of managements and use of inoculants offer ways of improving asymbiotic N₂ fixation.In laboratory culture systems, inoculation of straws with cellulolytic and diazotrophic microorganisms has resulted in significant increases in N₂ fixation in comparison to uninoculated controls and gains of N of up to 72 mg N fixed g^-1 straw consumed have been obtained, indicating the potential of inoculation to improve N gains in composts that can then be used as biofertilisers. Soils, on the other hand, contain established, indigenous microbial populations which tend to exclude inoculant microorganisms by competition. As a consequence, improvements in straw-associated N₂ fixation in soils have been achieved mostly by specific straw-management practices which encourage microbial activity by straw-decomposing and N₂-fixing microorganisms.Further research is needed to quantify more accurately the contribution of asymbiotic N₂ fixation to cropping systems. New strains of inoculants, including those capable of both cellulolytic and N₂-fixing activity, are needed to improve the N content of biofertilisers produced from composts. Developments of management practices in farming systems may result in further improvements in N₂ fixation in the field.     

Simultaneous quantification of N2, NH3 and N2O emissions from a flooded paddy field under different N fertilization regimes

Gaseous nitrogen (N) emissions, especially emissions of dinitrogen (N₂) and ammonia (NH₃), have long been considered as the major pathways of N loss from flooded rice paddies. However, no studies have simultaneously evaluated the overall response of gaseous N losses to improved N fertilization practices due to the difficulties to directly measure N₂ emissions from paddy soils. We simultaneously quantified emissions of N₂ (using membrane inlet mass spectrometry), NH₃ and nitrous oxide (N₂O) from a flooded paddy field in southern China over an entire rice‐growing season. Our field experiment included three treatments: a control treatment (no N addition) and two N fertilizer (220 kg N/ha) application methods, the traditional surface application of N fertilizer and the incorporation of N fertilizer into the soil. Our results show that over the rice‐growing season, the cumulative gaseous N losses from the surface application treatment accounted for 13.5% (N₂), 19.1% (NH₃), 0.2% (N₂O) and 32.8% (total gaseous N loss) of the applied N fertilizer. Compared with the surface application treatment, the incorporation of N fertilizer into the soil decreased the emissions of NH₃, N₂ and N₂O by 14.2%, 13.3% and 42.5%, respectively. Overall, the incorporation of N fertilizer into the soil significantly reduced the total gaseous N loss by 13.8%, improved the fertilizer N use efficiency by 14.4%, increased the rice yield by 13.9% and reduced the gaseous N loss intensity (gaseous N loss/rice yield) by 24.3%. Our results indicate that the incorporation of N fertilizer into the soil is an effective agricultural management practice in ensuring food security and environmental sustainability in flooded paddy ecosystems.     

Kinetics and reactions of hydrogen sulphide in solution of flooded rice soils

Summary The sulphide-ion electrode was used to study the kinetics and reactions of free hydrogen sulphide in solution of flooded rice soils. The observed sulphide potential obeyed the Nernst equation over a range of sulphide-ion concentration from 10^-1 to 10^-19 M. Peak H₂S concentrations were lowest in neutral soils high in iron and manganese; moderately high in soils low in iron or high in organic matter; and highest in acid sulphate soil low in iron. Harmful concentrations of H₂S may be present in acid sulphate and acid soils low in iron during the first few weeks after flooding. The concentrations in acid sulphate soils can be drastically lowered by liming. There was thermodynamic evidence for the presence of FeS and ZnS in the solutions of most soils.     

Changes of methane and nitrous oxide emissions in a transition bog in central Germany (German National Park Harz Mountains) after rewetting

During the last decades, various renaturation programmes have been initialized to recover nutrient sink and ecological functions of peatlands by rewetting. Rewetting, however, often results in the formation of hotspots for methane (CH₄) emissions and in temporal dieback of local vegetation. The present study aimed at quantifying changes of CH₄ and nitrous oxide (N₂O) emissions in a peatland currently under continuous rewetting conditions. Emissions where studied at a permanently flooded site and a non-flooded peat site with fluctuating water tables by using common closed chamber method. The permanently flooded site revealed extremely high CH₄ emissions (up to 1195 mg C m^?2 d^?1) which were positively correlated with temperature, nutrient content, dissolved organic carbon and nitrogen concentration of the peat soil water. In contrast, the non-flooded peat site, with lower and fluctuating water tables (WT), showed significantly lower CH₄ emissions and an increasing trend of CH₄ release associated with a generally increasing WT caused by the progressing rewetting process. Lower N₂O emissions (<24 µg N m^?2 d^?1) were observed at the flooded site. By contrast, the non-flooded peat site with fluctuating WT showed significantly higher N₂O emissions (up to 4178 µg N m^?2 d^?1), in particular at high temperatures during summer time. The present results indicate that permanently flooded conditions during rewetting processes might cause higher CH₄ emissions compared to fluctuating WT which in contrast might enhance N₂O emissions. In total, however, no decreasing trend for CH₄ emissions throughout the five-year renaturation period could be found. At least for N₂O we observed a decreasing trend during rewetting.     

Rhizobium-Legume Symbiosis and Nitrogen Fixation under Severe Conditions and in an Arid Climate

Biological N₂ fixation represents the major source of N input in agricultural soils including those in arid regions. The major N₂-fixing systems are the symbiotic systems, which can play a significant role in improving the fertility and productivity of low-N soils. The Rhizobium-legume symbioses have received most attention and have been examined extensively. The behavior of some N₂-fixing systems under severe environmental conditions such as salt stress, drought stress, acidity, alkalinity, nutrient deficiency, fertilizers, heavy metals, and pesticides is reviewed. These major stress factors suppress the growth and symbiotic characteristics of most rhizobia; however, several strains, distributed among various species of rhizobia, are tolerant to stress effects. Some strains of rhizobia form effective (N₂-fixing) symbioses with their host legumes under salt, heat, and acid stresses, and can sometimes do so under the effect of heavy metals. Reclamation and improvement of the fertility of arid lands by application of organic (manure and sewage sludge) and inorganic (synthetic) fertilizers are expensive and can be a source of pollution. The Rhizobium-legume (herb or tree) symbiosis is suggested to be the ideal solution to the improvement of soil fertility and the rehabilitation of arid lands and is an important direction for future research.     

15N2 incorporation and acetylene reduction by Azospirillum isolated from rice roots and soils

Summary Nitrogen fixation by strains of Azospirillum isolated from several rice soils and rice cultivars was investigated by¹⁵N₂ incorporation and C₂H₂ reduction. C₂H₂ reducing ability markedly varied among the strains obtained from soils differing widely in their physico-chemical properties. Large variations in¹⁵N₂ incorporation by Azospirillum isolated from the roots of several rice cultivars were also noticed. The present study reveals that rice cultivars harbour Azospirillum with differential N₂-fixing ability and that plant genotype is of importance for optimal associations.     

Evaluation of silica-supplying power of soils for growing rice

Summary Laboratory incubation and pot culture experiments conducted with five laterite, two red, two alluvial and one calcareous black, rice-growing soils showed that the power of extraction of silica both from dry and wet soils was in the descending order 0.2 N HCl, 0.025 M citric acid, N NaOAc at pH 4 and distilled water. Flooding increased the silica extracted by these four extractants which reached a peak in 20 days after which there was either no change or a slight decrease during the next forty days. The silica content and uptake in the crop was low in all except the black soil. The silica content of the dry-season crop was higher than that of the wet-season crop possibly because of more favourable climatic conditions prevailing during dry season which enhanced absorption. Correlation studies between silica extracted by different solutions both in dry and flooded soils and content and uptake of silica by the rice plant indicated that 0.025 M citric acid was the best extractant which could be used in the evaluation of the silicon supplying power of rice soils. re]19761012     

Alder and lupine enhance nitrogen cycling in a degraded forest soil in Northern Sweden

Positive effects of legumes and actinorhizal plants on N-poor soils have been observed in many studies but few have been done at high latitudes, which was the location of our study. We measured N₂ fixation and several indices of soil N at a site near the Arctic Circle in northern Sweden. More than 20 years ago lupine (Lupinus nootkatensis Donn) and gray alder (Alnus incana L. Moench) were planted on this degraded forest site. We measured total soil N, net N mineralization and nitrification with a buried bag technique, and fluxes of NH⁺ ₄ and NO^– ₃ as collected on ion exchange membranes. We also estimated N₂ fixation activity of the N₂-fixing plants by the natural abundance of ¹⁵N of leaves with Betula pendula Roth. as reference species. Foliar nitrogen in the N₂-fixing plants was almost totally derived from N₂ fixation. Plots containing N₂-fixing species generally had significantly higher soil N and N availability than a control plot without N₂-fixing plants. Taken together, all measurements indicated that N₂-fixing plants can be used to effectively improve soil fertility at high latitudes in northern Sweden.     

A study of nodulation and nitrogen fixation of alder on the purplish soils in China

Summary The alder has a perennial nodule cluster. The nodule amount on the roots increases with tree age. The N₂-fixing activity of nodules decreases with nodule age. Purple coloured soils with various soil pHs and CaCO₃ contents are, in the main, the ones which influence nodulation and N₂-fixing. Higher N₂-fixing capacity existed in the neutral and low calcium soils. High calcium soils and acid soils can restrain nodulation and the N₂-fixing rate significantly. On the slope, where calcarous light loams are found, the annual nitrogen fixation capacity of alder and cypress mixed plantations, less than 10 years old, is 16 or 17 kg/ha yr, but in the valley, a pure alder plantation can reach 40 kg/ha yr.     

Heterotrophic n(2) fixation and distribution of newly fixed nitrogen in a rice-flooded soil system

Rice (Oryza sativa L.) plants growing in pots of flooded soil were exposed to a ¹⁵N₂-enriched atmosphere for 3 to 13 days in a gas-tight chamber. The floodwater and soil surface were shaded with a black cloth to reduce the activity of phototrophic N₂-fixing micro-organisms. The highest ¹⁵N enrichments were consistently observed in the roots, although the total quantity of ¹⁵N incorporated into the soil was much greater. The rate of ¹⁵N incorporation into roots was much higher at the heading than at the tillering stage of growth. Definite enrichments were also found in the basal node and in the lower outer leaf sheath fractions after 3 days of exposure at the heading stage. Thirteen days was the shortest time period in which definite ¹⁵N enrichment was observed in the leaves and panicle. When plants were exposed to ¹⁵N₂ for 13 days just before heading and then allowed to mature in a normal atmosphere, 11.3% of the total ¹⁵N in the system was found in the panicles, 2.3% in the roots, and 80.7% in the subsurface soil. These results provide direct evidence of heterotrophic N₂ fixation associated with rice roots and the flooded soil and demonstrate that part of the newly fixed N is available to the plant.     

INTERACTION OF NITROGEN FIXATION AND PHOSPHORUS LIMITATION IN APHANIZOMENON FLOS-AQUAE (CYANOPHYCEAE)1

The effect of simultaneous nitrogen fixation and phosphorus limitation on the physiological adaptation and growth performance of Aphanizomenon flos-aquae (L.) Ralfs PCC 7905 was studied in continuous culture. In the absence of ammonia, N₂ fixation occurred and the maximum growth rate (as determined in diluted batch cultures) was lower. However, no distinction could be made between the steady-state N uptake rates (based on cellular N contents) of N₂-fixing cells and cells grown with ammonia. At the higher dilution rates, the residual P concentration increased with increasing dilution rate, more so under N₂-fixing conditions, compared to the cultures grown in the presence of ammonia. More generally, the yield of biomass per consumed P, as the biomass concentration itself, decreased with increasing dilution rate, and both were lower under N₂-fixing conditions. The restricted biomass production under N₂-fixing conditions suggests that reduction of N loading may benefit lake restoration projects. The influence of N₂-fixation on the severity of P limitation is discussed in terms of metabolic control analysis. From the increase of the residual P concentration on switching from ammonium to N₂-fixing conditions, it is deduced that under N₂-fixing and P-limited conditions, control of growth is shared by N and P metabolism.     

Production of nitrous oxide in artificially flooded and drained soils

Production of nitrous oxide (N₂O) was studied in one peaty and one sandy soil undergoing wetting and drying cycles. The background concentration of N₂O in the soil was compared with the N₂O produced during 4 hours of incubation with and without addition of acetylene. The concentration of N₂O in the soil under flooded conditions was relatively stable, and net consumption of N₂O was observed as often as net production. The reference area and drained soils showed somewhat different patterns compared to the flooded soils, which was probably an effect of intermediate soil water conditions. During flooding, the nitrous oxide made up less than 1% of total denitrification on 50% and 54% of the sampling occasions for the peaty and the sandy soil, respectively, and N₂O/(N₂O+N₂)-ratios exceeded 0.2 on only 6% and 3% of the sampling occasions. Under drained conditions and in the reference areas, the ratios showed a more even frequency distribution. Grouping the nitrous oxide production data for different seasons and field conditions, we found few seasonal trends. At the sandy site, mean production of N₂O was larger during the winter months. There were weak correlations between N₂O production and floodwater nitrate concentration, and between N₂O production and soil temperature. N₂O production in the reference area varied between consumption and 4.6 kg N ha^–1 month^–1 and in flooded and drained soil between consumption and 2.6 kg N ha^–1 month^–1.     

Assay of nitrogen supplying capacity of tropical rice soils

Summary The nitrogen supplying capacity of 39 wetland rice soils evaluated by two anaerobic incubation methods and six chemical methods was compared with N uptake of IR 26 rice grown on these soils under flooded conditions in a greenhouse pot study. The uptake of N by rice correlated highly with the N supplying capacity determined by anaerobic incubation methods involving incubation of soils at 30°C for 2 weeks (r=0.84^**) or at 40°C for 1 week (r=0.82^**) as well as with the organic carbon (r=0.82^**) and total N (r=0.84^**) contents of soils. Among the chemical indexes, available N determined by the oxidative release of soil N by alkaline permanganate, acid permanganate, acid dichromate and hydrogen peroxide also provided good index of soil N availability to rice. According to these results soil organic carbon and total N contents seem to be good indexes of available nitrogen in tropical wetland rice soils.     

Root growth response of rainfed lowland rice to aerobic conditions in northeastern Thailand

Background and aims

Rice plants alternately experience anaerobic and aerobic conditions during their life cycle in rainfed lowlands. Each condition affects root growth differently. Our objective was to clarify the specific rice root response to aerobic conditions in rainfed lowlands.

Methods

At the Ubon Ratchathani Rice Research Center in northeastern Thailand, we obtained root samples from 17 ‘Surin1’ (Thai variety) BC₃-derived lines and 7 CT9993-5-10-1-M × IR62266-42-6-2 doubled-haploid lines from flooded and non-flooded paddy fields at the reproductive stage in 2010 and 2011.

Results

In the non-flooded trial, rice was grown aerobically by draining the perched water; soil moisture at a depth of 20 cm fluctuated between ?10 and ?30 kPa. Deep rooting was likely promoted under aerobic conditions, but slightly drier soils under longer dry spells seemed to restrict root penetration, as the topsoil rapidly hardened during dry spells of only a few days. Fine-root development in the topsoil was inhibited under aerobic conditions.

Conclusions

Even without drought stress, rice roots respond significantly to the disappearance of standing water in rainfed lowlands via deep rooting and root branching. We identified one promising ‘Surin1’ BC₃-derived line showing an adaptive response of deep rooting under aerobic conditions, which can be used as a breeding material for rainfed lowland rice in Thailand.