A role for calcium in Bcl-2 action?

Changes in the cytosolic Ca(2+) concentration ([Ca(2+)](c)) translate a variety of extracellular signals into widely diverse intracellular effects, ranging from secretion to movement, proliferation and also cell death. As regards the last one, it has long been known that large [Ca(2+)](c) increases lead cells to death. More recently, experimental evidence has been obtained that the oncogene Bcl-2 reduces the state of filling of intracellular Ca(2+) stores and thus affects the Ca(2+) responses induced by physiological and pathological stimuli. In this contribution, we will discuss this effect and its significance for the mechanism of action of Bcl-2, an important checkpoint of the apoptotic process.     

Biochar’s role as an alternative N-fertilizer: ammonia capture

Background

Biochar’s role as a carbon sequestration agent, while simultaneously providing soil fertility improvements when used as an amendment, has been receiving significant attention across all sectors of society, ranging from academia, industry, government, as well as the general public. This has lead to some exaggeration and possible confusion regarding biochar’s actual effectiveness as a soil amendment. One sparsely explored area where biochar appears to have real potential for significant impact is the soil nitrogen cycle.

Scope

Taghizadeh-Toosi et al. (this issue) examined ammonia sorption on biochar as a means of providing a nitrogen-enriched soil amendment. The longevity of the trapped ammonia was particularly remarkable; it was sequestered in a stable form for at least 12?days under laboratory air flow. Furthermore, the authors observed increased ¹⁵N uptake by plants grown in soil amended with the ¹⁵N-enriched biochar, indicating that the ¹⁵N was not irreversibly bound, but, was plant-available.

Conclusions

Their observations add credence to utilizing biochar as a carrier for nitrogen fertilization, while potentially reducing the undesired environmental consequences through gas emissions, overland flow, and leaching.     

A role for genetic accommodation in evolution?

Whether evolutionary change can occur by genetic assimilation, or more generally by genetic accommodation, remains controversial. Here we examine some of the experimental evidence for both phenomena. Several experiments in Drosophila suggest that assimilation is possible, and a new paper shows that a color polyphenism in the tobacco hornworm, Manduca sexta, can evolve by genetic accommodation. We argue that genetic accommodation, including assimilation, is a plausible mechanism in evolution; however, more work is required to test how this mechanism acts and how often it is involved in evolutionary change.     

You say you want an evolution? A role for scientists in science education

We conducted a national survey of likely U.S. voters to examine acceptance of evolution, attitudes toward science and scientists, and opportunities for promoting science education. Most respondents accepted that life evolved, many accepted that it evolved through natural processes, and more favored teaching evolution than creationism or intelligent design in science classes. The majority ranked developing medicines and curing diseases as the most important contributions of science to society, and they found promoting understanding of evolutionary science's contribution to medicine to be a convincing reason to teach evolution. Respondents viewed scientists, teachers, and medical professionals favorably, and most were interested in hearing from these groups about science, including evolution. These data suggest that the scientific community has an important role to play in encouraging public support for science education.     

What physiological role(s) does the alternative oxidase perform in animals?

Although the alternative oxidase, AOX, was known to be widespread in the animal kingdom by 2004, its exact physiological role in animals remains poorly understood. Here we present what evidence has accumulated thus far, indicating that it may play a role in enabling animals to resist various kinds of stress, including toxins, abnormal oxygen or nutrient levels, protein unfolding, dessication and pathogen attack. Much of our knowledge comes from studies in model organisms, where any benefits from exogenously expressed AOX may be masked by its unregulated expression, which may itself be stressful. The further question arises as to why AOX has been lost from some major crown groups, namely vertebrates, insects and cephalopods, if it plays important roles favouring the survival of other animals. We conclude by presenting some speculative ideas addressing this question, and an outline of how it might be approached experimentally.     

A role for phytotoxins in thePhragmites die-back syndrome?

Die-back and healthy stands ofPhragmites australis (Cav.) Trin. exSteud., in the U.K. and Hungary, were compared in terms of plant morphology and anatomy, sediment redox potential and sulphide levels and plant resistance to internal Poiseuille gas flow. In laboratory experiments rhizome cuttings were exposed to acetic acid or dissolved sulphide in unstirred solution cultures in order to determine whether the die-back symptoms found in the field could be induced by these phytotoxins. Most of the die-back symptoms, namely stunting of adventitious roots and laterals, bud death, callus blockages of the gas-pathways, and vascular blockages (both xylem and phloem), were produced by each of the phytotoxin treatments. These symptoms were largely absent from healthy field sites and from the experimental controls. In a greenhouse experiment, plants were grown in waterlogged sand or loam, with or without a sub-surface organic layer composed of chopped up rhizomes and roots mixed with the soil base. Especially during the first 70 days, redox levels were considerably lowered, and shoot numbers and shoot growth much reduced by the presence of the organic layers; the effects were most pronounced in the sand plus organic matter treatment. It is suggested that accumulated phytotoxins, e.g. orgnaic acids and/or sulphide, whether produced from the death and decay of the plant, or from excessive organic loading or as an indirect results of eutrophication, will perpetuate the die-back ofPhragmites and prevent the recovery of the plant in the short term.     

Do grasslands act as a perpetual sink for carbon?

It is increasingly commonly suggested that grasslands are a perpetual sink for carbon, and that just maintaining grasslands will yield a net carbon sink. I examine the evidence for this from repeated soil surveys, long term grassland experiments and simple mass balance calculations. I conclude that it is untenable that grasslands act as a perpetual carbon sink, and the most likely explanation for observed grassland carbon sinks over short periods is legacy effects of land use and land management prior to the beginning of flux measurement periods. Simply having grassland does not result is a carbon sink, but judicious management or previously poorly managed grasslands can increase the sink capacity. Given that grasslands are a large store of carbon, and that it is easier and faster for soils to lose carbon that it is for them to gain carbon, it is an important management target to maintain these stocks.     

A role for reduced coenzyme Q in atherosclerosis?

Substantial evidence implicates oxidative modification of low density lipoprotein (LDL) as an important event contributing to atherogenesis. As a result, the elucidation of the molecular mechanisms by which LDL is oxidized and how such oxidation is prevented by antioxidants has been a significant research focus. Studies on the antioxidation of LDL lipids have focused primarily on alpha-tocopherol (alpha-TOH), biologically and chemically the most active form of vitamin E and quantitatively the major lipid-soluble antioxidant in extracts prepared from human LDL. In addition to alpha-TOH, plasma LDL also contains low levels of ubiquinol-10 (CoQ10H2; the reduced form of coenzyme Q10). Recent studies have shown that in oxidizing plasma lipoproteins alpha-TOH can exhibit anti- or pro-oxidant activities for the lipoprotein's lipids exposed to a vast array of oxidants. This article reviews the molecular action of alpha-TOH in LDL undergoing "mild" radical-initiated lipid peroxidation, and discusses how small levels of CoQ10H2 can represent an efficient antioxidant defence for lipoprotein lipids. We also comment on the levels alpha-TOH, CoQ10H2 and lipid oxidation products in the intima of patients with coronary artery disease and report on preliminary studies examining the effect of coenzyme Q10 supplementation on atherogenesis in apolipoprotein E knockout mice.     

A role for haemoglobin in all plant roots?

Abstract. We have found haemoglobin in plant roots whereas previously it has been recorded only in nitrogen fixing nodules of plants. Haemoglobin occurs not only in the roots of those plants that are capable of nodulation but also in the roots of species that are not known to nodulate. We suggest that a haemoglobin gene may be a component of the genome of all plants. The gene structure and sequence in two unrelated families of plants suggests that the plant haemoglobins have had a single origin and that this origin relates to the haemoglobin gene of the animal kingdom. At present we cannot completely rule out the possibility of a horizontal transfer of the gene from the animal kingdom to a progenitor of the dicotyledonous angiosperms but we favour a single origin of the gene from a progenitor organism to both the plant and animal kingdoms. We speculate about the possible functions of haemoglobin in plant roots and put the case that it is unlikely to have a function in facilitating oxygen diffusion. We suggest that haemoglobin may act as a signal molecule indicating oxygen deficit and the consequent need to shift plant metabolism from an oxidative to a fermentative pathway of energy generation.     

A1 toxicity in yeast. A role for Mg?

We have established conditions in which soluble Al is toxic to the yeast Saccharomyces cerevisiae. The major modifications to a standard synthetic medium were lowering the pH and the concentration of Mg ions. Alterations to the PO4, Ca, or K concentration had little effect on toxicity. Organic acids known to chelate Al reduced its toxicity, suggesting that Al3+ is the toxic Al species. The unique ability of Mg ions to ameliorate Al toxicity led us to investigate the hypothesis that Al inhibits Mg uptake by yeast. Yeast cells accumulate Mg, Co, Zn, Ni, and Mn ions via the same transport system (G.F. Fuhrmann, A. Rothstein [1968] Biochim Biophys Acta 163: 325-330). Al3+ inhibited the accumulation of 57Co2+ by yeast cells more effectively than Ga, La, or Mg. In addition, a mutant yeast strain with a defect in divalent cation uptake proved to be more sensitive to Al than a wild-type strain. Taken together, these results suggest that Al may cause Mg deficiency in yeast by blocking Mg transport. We discuss the relevance of yeast as a model for the study of Al toxicity in plant systems.     

High potential iron–sulfur proteins and their role as soluble electron carriers in bacterial photosynthesis: tale of a discovery

This review is an attempt to retrace the chronicle of the discovery of the role of high-potential iron–sulfur proteins (HiPIPs) as electron carriers in the photosynthetic chain of bacteria. Data and facts are presented through the magnifying lenses of the authors, using their best judgment to filter and elaborate on the many facets of the research carried out on this class of proteins over the years. The tale is divided into four main periods: the seeds, the blooming, the ripening, and the harvest, representing the times from the discovery of these proteins to the most recent advancements in the understanding of the relationship between their structure and their function.     

A role for cyclic hydroxamates in aluminium resistance in maize?

Hydroxamate siderophores have been found to alleviate Al toxicity in bacteria. In Poaceae plants cyclic hydroxamates, like DIMBOA (2,4-dihydroxy-7-methoxy-1,4-benzoxazin-3-one) and its derivatives have mostly been studied in relation to either defence against insects or allelopathy. In this study the influence of Al on concentrations of these benzoxazinoids (Bx) in root tips, whole roots and root xylem exudates of Zea mays L. varieties differing in Al resistance was analyzed by HPLC-MS. Aluminium resistant maize variety Sikuani maintained considerably higher Bx levels in root tips than the Al sensitive variety Bakero. In vitro binding of Al to DIMBOA was shown by fluorescence quenching. Addition of DIMBOA to Al-containing nutrient solution protected the sensitive maize against Al toxicity as shown by bioassays using callose and haematoxylin staining of root tips as stress indicators. This is the first study showing that Bx can detoxify Al in solution. Tissue analysis data provide first, circumstantial, support for a role of Bx in defence against Al toxicity also in planta.