Relationships between the expression of the stapedial artery and the size of the obturator foramen in euarchontans: Functional and phylogenetic implications

Cranial arterial patterns are commonly used for determining phylogenetic patterns in extant taxa and have often been used in studies investigating the relationships among fossil taxa. In primitive eutherians, the stapedial artery provided blood to the meninges, orbits, and certain regions of the face. In many modern mammals, however, blood supply to most of these areas has been taken over by branches of the external carotid, although some groups (e.g., treeshrews, some families of primates) still retain aspects of the ancestral pattern. Here, we show that the relative size of the obturator foramen of the stapes is a reliable indicator of the presence or absence of a “functional” stapedial artery in Euarchonta. We also describe newly discovered stapedes for extinct euarchontans, Ignacius graybullianus, and Plesiadapis tricuspidens, and use the approach described here to show that these taxa likely did not have a functional stapedial artery. The implications of these findings for auditory function and phylogenetic studies are discussed.     

The trouble with flippers: a report on the prevalence of digital anomalies in Cetacea

The forelimbs of cetaceans (whales, dolphins, and porpoises) are unique among mammals as the digits exhibit hyperphalangy, and the entire limb is encased in a soft tissue flipper that functions to generate lift. The typical morphology of cetacean digits has been well documented by detailed anatomical studies. This study however furthers our understanding of cetacean forelimb anatomy by conducting a taxonomically broad survey of cetacean digital anomalies. Forelimb radiographs from museum collections provided the basis upon which we calculated the prevalence and documented the morphology of cetacean digital abnormalities. Results indicated that 11% (n = 255) of toothed whales displayed some type of aberrant ossification: the majority of these cases displayed a fusion of elements within a single digital ray, whereas cases exhibiting branched digits were rare. A small sample of baleen whale radiographs (n = 6) contained the only documented case of baleen whale polydactyly in a specimen of the gray whale (Eschrichtius). Furthermore, some Balaenoptera specimens displayed ossified elements within the interdigital spaces that lacked attachment to the adjacent digits and carpus. In addition, we speculated on the role that several genes may have played in creating cetacean digital anomalies. © 2009 The Linnean Society of London, Zoological Journal of the Linnean Society, 2009, 155 , 722–735.     

Aspects of the fossil record and phylogeny of the familyRutaceae (Zanthoxyleae,Toddalioideae)

A comparative analysis of the seed morphology and anatomy of fossil and extantRutaceae (mainlyZanthoxyleae andToddalioideae) is presented. This allows to place the most important fossil taxa in a time-table and on paleogeographical maps. A phylogenetic scheme demonstrates the postulated historical relationships ofEvodia, Zanthoxylum, Fagara, Rutaspermum, Acronychia, Toddalia, Fagaropsis, andPhellodendron.     

A presumed spelaeogriphacean crustacean from an upper Barremian wetland (Las Hoyas; Lower Cretaceous; Central Spain)

Abstract: A third fossil attributable to the crustacean peracarid order Spelaeogriphacea is described from an Upper Barremian (125 Ma) lacustrine environment in Central Spain. Neither the new taxon, Spinogriphus ibericus gen. et sp. nov., nor the two already described fossil forms can be identified with certainty as crown‐group spelaeogriphaceans. We consider that Schram’s 1974 family Acadiocarididae represents stem‐lineage spelaeogriphaceans and should accommodate these fossil taxa that display very generalised peracaridan features and lack any conspicuous autapomorphies, except for a short carapace, undifferentiated pereiopods, foliaceous pleopods and a tail fan‐like (uropods + telson) caudal structure where the unsegmented uropodal endopod lacks annulation. The zoogeography of the Acadiocarididae is Laurasian in contrast to the modern, crown‐group spelaeogriphaceans (Spelaeogriphidae), which are limited to Gondwanan territories.     

Lasanius,an exceptionally preserved Silurian jawless fish from Scotland

The fossil record of non-biomineralizing, soft-bodied taxa is our only direct evidence of the early history of vertebrates. A robust reconstruction of the affinities of these taxa is critical to unlocking vertebrate origins and understanding the evolution of skeletal tissues, but these taxa invariably have unstable and poorly supported phylogenetic positions. At the cusp between mineralized bony vertebrates and entirely soft-bodied vertebrates is the enigmatic Lasanius, a purported anaspid from the Silurian of Scotland. Interpretations of its affinity and significance are conflicted, principally because of its poorly understood anatomy due to taphonomic distortion and loss of soft-tissues. Here we use an array of modern techniques to reassess the anatomy of Lasanius via a comprehensive study of 229 complete and partial specimens. A new reconstruction clarifies the identity and position of preserved features, including paired sensory organs, a notochord, and digestive tract, supporting the vertebrate affinities of this genus. SEM-EDS trace element mapping suggests a bone-like composition of mineralized parts, but finds no evidence for mineralized dermal armour. Phylogenetic analysis recovers Lasanius as an early stem-cyclostome, and subsequent analysis supports the rejection of alternative placements (such as stem-gnathostome). We highlight that while distinguishing between the early cyclostome and gnathostome condition is problematic, increasing confidence in the anatomy of key taxa, such as Lasanius, is vital for increased stability throughout the early vertebrate tree.     

Anatomical study: comparison of the cranial fragment from venta micena, (orce; Spain) with fossil and extant mammals

The fragment of the skull of Orce attributed to the genusHomo is compared with fossil and extant mammals. The anatomical analysis supports the idea of ascribing it to an infantile individual of the genusHomo, close to the primitive Turkana specimens.     

Molecular Phylogeny and Systematics of Anoplocephaline Cestodes in Rodents and Lagomorphs

A molecular phylogenetic hypothesis is presented for the anoplocephaline cestodes of placental mammals based on sequence data from the mitochondrial cytochrome c oxidase I (COI) gene, the nuclear-encoded 28S rRNA gene and the internal transcribed spacer region I of rRNA (ITS1). The material consists of 35 species representing nine genera of cestodes, with emphasis on taxa parasitising rodents and lagomorphs in the Holarctic region. The resulting phylogenies show considerable disagreement with earlier systematic and phylogenetic hypotheses derived from morphology. Specifically, the results contradict the view of uterine morphology being the primary determinant of deeper phylogenetic splits within Anoplocephalinae. Also, the role of genital duplication as a means of generic divergence was not found to follow consistently the pattern suggested by earlier hypotheses. Colonisation of novel host lineages has evidently been the predominant mode of diversification in anoplocephaline cestodes of placental mammals; evidence for phyletic co-evolution was obscure. The phylogenies consistently distinguished a large monophyletic group including all species from arvicoline rodents (voles and lemmings), primarily representing the genera Anoplocephaloides Baer, 1923 and Paranoplocephala Lühe, 1910. Phylogenetic relationships within the “arvicoline clade” of cestodes were generally poorly resolved. Consistent support for nodes above and below the unresolved polytomy indicates a rapid radiation involving a nearly simultaneous diversification of many lineages, a scenario also proposed for the arvicoline hosts.     

The past and the present through phylogenetic analysis: the rove beetle tribe Othiini now and 99 Ma

In order to classify and taxonomically describe the first two fossil Othiini (Coleoptera: Staphylinidae: Staphylininae) species from three well‐preserved specimens in Cretaceous Burmese amber, a phylogenetic analysis was conducted, combining extant and extinct taxa. A dataset of 76 morphological characters scored for 33 recent species across the subfamilies Staphylininae and Paederinae was analysed using maximum parsimony and Bayesian inference methods. The many differing phylogenetic hypotheses for higher‐level relationships in the large rove beetle subfamilies Staphylininae and Paederinae were summarized and their hitherto known fossil record was reviewed. Based on the analyses, the new extinct genus Vetatrecus gen.n. is described with two new species: V. adelfiae sp.n. and V. secretum sp.n. Both species share character states that easily distinguish them from all recent Othiini and demonstrate a missing morphological link between subfamilies Staphylininae and Paederinae. This is the first morphology‐based evidence for the paraphyly of Staphylininae with respect to Paederinae, suggested earlier by two independent molecular‐based phylogenies of recent taxa. Our newly discovered stem lineage of Othiini stresses the importance of fossils in phylogenetic analyses conducted with the aim of improving the natural classification of extant species. It also suggests that the definitions of Staphylininae and Paederinae, long‐established family‐group taxa, may have to be reconsidered. This published work has been registered in ZooBank, http://zoobank.org/urn:lsid:zoobank.org:pub:817F39C4-F36B-4FD9-96CD-5F8FB064C39E .     

Dental anomaly in a fossil squalodont dolphin from New Zealand,and the evolution of polydonty in whales

Abstract

A fragment of mandible of an indeterminate squalodontid dolphin (Upper Oligocene or lowermost Miocene, New Zealand) has 2 anomalous single-rooted teeth intercalated between typically squalodontid anterior cheek-teeth. The anomalous teeth are considered to be truly supernumerary, and not homologous with any erupted teeth in phylogenetically earlier Cetacea. This type of anomaly appears not to have been reported previously for any fossil cetacean. Polydonty, a characteristic of extant odontocetes, was probably attained initially in primitive odontocetes by intercalation of permanent and deciduous teeth, and later was elaborated by the addition of supernumerary teeth. The present specimen represents a morphological (but not phylogenetic) stage between odontocetes with limited and advanced polydonty. Some fossil mysticetes and embryonic extant mysticetes are also polydont, but mysticete polydonty and that of odontocetes have probably evolved convergently.     

Additional postcranial elements of Teilhardina belgica: The oldest European primate

Teilhardina belgica is one of the earliest fossil primates ever recovered and the oldest fossil primate from Europe. As such, this taxon has often been hypothesized as a basal tarsiiform on the basis of its primitive dental formula with four premolars and a simplified molar cusp pattern. Until recently [see Rose et al.: Am J Phys Anthropol 146 (2011) 281–305; Gebo et al.: J Hum Evol 63 (2012) 205–218], little was known concerning its postcranial anatomy with the exception of its well‐known tarsals. In this article, we describe additional postcranial elements for T. belgica and compare these with other tarsiiforms and with primitive adapiforms. The forelimb of T. belgica indicates an arboreal primate with prominent forearm musculature, good elbow rotational mobility, and a horizontal, rather than a vertical body posture. The lateral hand positions imply grasps adaptive for relatively large diameter supports given its small body size. The hand is long with very long fingers, especially the middle phalanges. The hindlimb indicates foot inversion capabilities, frequent leaping, arboreal quadrupedalism, climbing, and grasping. The long and well‐muscled hallux can be coupled with long lateral phalanges to reconstruct a foot with long grasping digits. Our phyletic analysis indicates that we can identify several postcranial characteristics shared in common for stem primates as well as note several derived postcranial characters for Tarsiiformes. Am J Phys Anthropol 156:388–406, 2015. © 2014 Wiley Periodicals, Inc.     

Two new fossil flowers of magnoliid affinity from the Late Cretaceous of New Jersey

Two taxa of cupulate magnoliid fossil flowers, Cronquistiflora and Detrusandra, are described from the Late Cretaceous (Turonian, ∼90 million years before present [MYBP]) Raritan (or lower Magothy) Formation of New Jersey. The fossil taxa are represented by flowers at various stages of development, associated fragments of cup-shaped floral receptacles with attached anthers, and isolated anthers. Both taxa have laminar stamens with adaxial thecae and valvate dehiscence. Pollen is boat-shaped and foveolate in anthers associated with Cronquistiflora and spherical with reticulate ornamentation in Detrusandra. Cup-shaped receptacles are externally bracteose in both taxa. The receptacle of Cronquistiflora is broader than the campanulate one of Detrusandra. Cronquistiflora also has more carpels (∼50 in a spiral vs. ∼5 in a whorl or tight spiral). In Detrusandra the carpels are surrounded by dorsiventrally flattened structures (pistillodes?) that are remote from the attachment of the stamens near the distal rim of the receptacular cupule. Detrusandra stigmas are rounded and bilobed, while those of Cronquistiflora, although bilateral in symmetry, are somewhat peltate. The fossil taxa share prominent characters with extant cupulate magnoliids (e.g., Eupomatia, Calycanthus), but also share characters with other magnoliids including Winteraceae. These fossils represent taxa that are character mosaics relative to currently recognized families. Inclusion of these fossils in existing data matrices and ensuing phylogenetic analyses effect changes in tree topologies consistent with their mosaicism relative to modern taxa. But such analyses do not definitively demonstrate the affinities of the fossils other than illustrating that these fossils are generalized magnoliids. Additional analysis of modern and fossil magnoliids is necessary to fully appreciate the phylogenetic significance and positions of these fossil taxa. However, the results of the phylogenetic analyses do introduce the possibility that extinct taxa of Magnoliales with cupulate floral receptacles were transitional between basal angiosperms and those with tricolpate pollen. The fossils provide insights into the timing of evolution of character complexes now associated with coleopteran pollination.     

Assessment of available anatomical characters for linking living mammals to fossil taxa in phylogenetic analyses

Analyses of living and fossil taxa are crucial for understanding biodiversity through time. The total evidence method allows living and fossil taxa to be combined in phylogenies, using molecular data for living taxa and morphological data for living and fossil taxa. With this method, substantial overlap of coded anatomical characters among living and fossil taxa is vital for accurately inferring topology. However, although molecular data for living species are widely available, scientists generating morphological data mainly focus on fossils. Therefore, there are fewer coded anatomical characters in living taxa, even in well-studied groups such as mammals. We investigated the number of coded anatomical characters available in phylogenetic matrices for living mammals and how these were phylogenetically distributed across orders. Eleven of 28 mammalian orders have less than 25% species with available characters; this has implications for the accurate placement of fossils, although the issue is less pronounced at higher taxonomic levels. In most orders, species with available characters are randomly distributed across the phylogeny, which may reduce the impact of the problem. We suggest that increased morphological data collection efforts for living taxa are needed to produce accurate total evidence phylogenies.     

A Total Evidence Phylogeny of the Arctoidea (Carnivora: Mammalia): Relationships Among Basal Taxa

A total evidence phylogenetic analysis was performed for 14 extant and 18 fossil caniform genera using a data matrix of 5.6 kbp of concatenated sequence data from six independent loci and 80 morphological characters from the cranium and dentition. Maximum parsimony analysis recovered a single most parsimonious cladogram (MPC). The topology of the extant taxa in the MPC agreed with previous molecular phylogenies. Phylogenetic positions for fossil taxa indicate that several taxa previously described as early members of extant families (e.g., Bathygale and Plesictis) are likely stem taxa at the base of the Arctoidea. Taxa in the “Paleomustelidae” were found to be paraphyletic, but a monophyletic Oligobuninae was recovered within this set of taxa. This clade was closely related to the extant genera Gulo and Martes, therefore, nested within the extant radiation of the family Mustelidae. This analysis provides a resolution to several discrepancies between phylogenies considering either fossil taxa or extant taxa separately, and provides a framework for incorporating fossil and extant taxa into comprehensive combined evidence analyses.     

The phyletic position and systematics of the douc langurs of Southeast Asia

In recent years, two major questions concerning the phyletic relationships and systematic position of the douc langurs have arisen. These concern, firstly, the taxonomic level at which the doucs as a group should be distinguished and, secondly, the number of taxa of doucs that should be recognized. It has recently been demonstrated on the basis of an exhaustive phylogenetic analysis that the doucs are generically distinct from the snub-nosed langurs and that they should be referred to as species of Pygathrix and Rhinopithecus, respectively [Jablonski and Peng, Folia Primatologica 60:36–55, 1993]. The present investigation was directed toward testing this conclusion using an expanded data set and a different method of character coding, and toward addressing the question as to the number of species or subspecies of doucs that should be recognized. A wide variety of data from large samples of doucs (n = 38), snub-nosed langurs (n = 53), and an out group (macaques; n = 191) were assembled, coded, and analyzed using an interactive computerized program for phylogenetic analysis. The specimens of Pygathrix examined included skeletal specimens, skins, and, when possible, living animals representing the three recognized taxa of doucs, nemaeus nigripes, and moi. The data base for the study comprised 178 characters, including measurements of skeletal specimens (98 characters), qualitative (presence or absence) morphological features (36 characters), characteristics of the pelage (39 characters), and 5 miscellaneous characters. The conclusions of the study were that 1) as a group, the taxa of Pygathrix preserved a larger number of primitive features for the Pygathrix-Rhino-pithecus clade than did the taxa of Rhinopithecus; 2) the taxa of Pygathrix were less different from one another than are the species of Rhinopithecus were from one another; 3) the subspecies Pygathrix nemaeus moi Kloss, 1926 be synonymized with Pygathrix nemaeus nigripes, as suggested by Napier [Catalogue of Primates in the British Museum (Natural History) and Elsewhere in the British Isles. Port III Family Cercopithecidae, Sub-Family Colobinae. London, 1985]; 4) the extant doucs were best recognized as two subspecies, P. nemaeus nemaeus for the red-shanked douc and P. nemaeus nigripes for the black-shanked douc; and 5) the phylogeny of the doucs and snub-nosed langurs proposed by Jablonski and Peng[op cit.,1993] was found to be robust. © 1995 Wiley-Liss, Inc.     

山西垣曲河堤组寨里段的低等四足类动物群

本文记述了我国晚始新世的一低等四足类动物群,包括三种蜥蜴和两种鳄类.其中的宽额半鳄蜥(Hemishinisaurus latifrons gen. et sp. nov.)是我国首次发现的异蜥科化石;垣曲响蜥(Tinosaurus yuanquensis sp. nov.)是响蜥属在我国的最晚代表.     

A New Marsupial from the Early Eocene Tingamarra Local Fauna of Murgon, Southeastern Queensland: A Prototypical Australian Marsupial?

Djarthia murgonensis, a new genus and species of marsupial from the early Eocene Tingamarra Local Fauna of Murgon in southeastern Queensland, is described on the basis of dental material. The combination of marsupial synapomorphies and symplesiomorphies present in D. murgonensis suggests phylogenetic placement within either Didelphidae or Australidelphia. Tarsal morphology, fundamental to the concepts of Ameridelphia and Australidelphia respectively, is not yet known for this taxon. Consequently, it cannot be assigned to either clade with confidence. If this taxon is australidelphian, it constitutes support for the hypothesis that the common ancestor of the Australian marsupial radiation was didelphoid-like in dental features. Some previous authors have contended that marsupial faunas of South America and Australia are manifestly distinct, excepting for the australidelphian affinity of South American microbiotheres. However, because tarsal anatomy is unknown in some generalized Australian fossil taxa, including D. murgonensis, and character analysis reveals that no synapomorphies of the dentition unequivocally define either Ameridelphia or Australidelphia to the exclusion of the other, we consider this interpretation to be premature. In short, available evidence neither supports nor refutes the argument of distinct South American and Australasian marsupial faunas. A further ramification is the need to reconsider the phylogenetic position of Ankotarinja tirarensis and Keeuna woodburnei. These central Australian fossil taxa might be referred to either Australidelphia or Ameridelphia, and it is recommended that both be treated as Marsupialia incertae sedis until further material comes to light.     

First mammal evidence from the Late Cretaceous of India for biotic dispersal between India and Africa at the KT transition

The Late Cretaceous record of mammals from India assumes great significance in view of the fact that it is the only Gondwanan landmass that has yielded definitive eutherian mammals. These mammals have variously been assigned to palaeoryctids, archontans or Eutheria incertae sedis. Well preserved lower molars recovered from a new mammal-yielding Deccan intertrappean site near Kisalpuri village, Dindori District, Madhya Pradesh (state), India, are described here under a new species Deccanolestes narmadensis sp. nov. The new fossil material indicates close phylogenetic relationship between Deccanolestes from India and Afrodon (Adapisoriculidae) from the Late Palaeocene of Africa and Europe. In view of older age and more primitive state of Deccanolestes teeth, it is inferred that Deccanolestes represents an ancestral morphotype from which the African/European adapisoriculid Afrodon may have been derived. This is the first compelling terrestrial fossil evidence for an early dispersal between India and Africa. Such a dispersal possibly involved an East African contact with India at the KT transition.