Progress curves analysis as an alternative for exploration of activation-inhibition phenomena in cholinesterases

The kinetic behaviour of insect acetylcholinesterases deviates from the Michaelis-Menten pattern. These deviations are known as activation or inhibition at various substrate concentrations and can be more or less observable depending on mutations around the active site of the enzyme. Most kinetic studies on these enzymes still rely on initial rate measurements. It is demonstrated here that according to this method one of the deviations can be overlooked. We attempt to point out that in such cases a detailed step-by-step progress curves analysis is successful. The study is focused on two different methods of analysing progress curves: (i) the first one is based on an integrated initial rate equation which can sufficiently fit truncated progress curves under corresponding conditions; and (ii) the other one precludes the algebraic formulae, but uses numerical integration for searching a non analytical solution of ordinary differential equations describing a kinetic model. All methods are tested on three different acetylcholinesterase mutants from Drosophila melanogaster. The results indicate that kinetic parameters for the E107K mutant with highly expressive activation and inhibition can be well evaluated applying any analysis method. It is quite different for E107W and E107Y mutants where latent activation is present, but discovered only using one or the other progress curves analysis methods.     

Progress Curves Analysis as an Alternative for Exploration of Activation-inhibition Phenomena in Cholinesterases

The kinetic behaviour of insect acetylcholinesterases deviates from the Michaelis-Menten pattern. These deviations are known as activation or inhibition at various substrate concentrations and can be more or less observable depending on mutations around the active site of the enzyme. Most kinetic studies on these enzymes still rely on initial rate measurements. It is demonstrated here that according to this method one of the deviations can be overlooked. We attempt to point out that in such cases a detailed step-by-step progress curves analysis is successful. The study is focused on two different methods of analysing progress curves: (i) the first one is based on an integrated initial rate equation which can sufficiently fit truncated progress curves under corresponding conditions; and (ii) the other one precludes the algebraic formulae, but uses numerical integration for searching a non analytical solution of ordinary differential equations describing a kinetic model. All methods are tested on three different acetylcholinesterase mutants from Drosophila melanogaster. The results indicate that kinetic parameters for the E107K mutant with highly expressive activation and inhibition can be well evaluated applying any analysis method. It is quite different for E107W and E107Y mutants where latent activation is present, but discovered only using one or the other progress curves analysis methods.     

Estimation of the initial velocity of enzyme-catalysed reactions by non-linear regression analysis of progress curves.

Most methods for studying the kinetic properties of an enzyme involve the determination of initial velocities. When the reaction progress curve shows significant curvature due to depletion of the substrate, accumulation of inhibitory products or instability of the enzyme, estimation of the initial velocity is a subjective and inexact process. Two methods have been suggested [Cornish-Bowden (1975) Biochem. J. 144, 305-312; Boeker (1982) Biochem J. 203, 117-123] that attempt to eliminate this subjective element. The present study offers a third alternative, which is based on fitting a reparameterized form of the integrated Michaelis-Menten equation to the progress curves by non-linear regression. This method yields estimates and standard errors of the initial velocity and of the time to reach 50% reaction. No prior knowledge of the apparent product concentration at zero time or infinite time is required, since both of these quantities are also estimated from the data. It is shown that this method yields reliable estimates of the initial velocity under a wide range of circumstances, including those where the two previously published methods perform poorly.     

On the validity of using semilogarithmic plots to determine initial velocities of enzyme-catalyzed reactions

It has been proposed (Johnston & Diven, 1969a) that it is valid to use semilogarithmic (first-order) plots of the extent of reaction versus time for graphic determination of initial velocities of enzyme-catalyzed reactions. This proposition suggests the assumption that the initial velocity error expected to be introduced by the proposed procedure is smaller than or comparable to the error introduced by the customary graphic procedure. The latter is based on the assumption that the progress curves of enzyme-catalyzed reactions have an initial linear segment of sufficient duration to permit accurate determination of slope. The validity of the procedure proposed by Johnston and Diven is examined in this report. It is concluded that the procedure is applicable to a very small class of enzyme-catalyzed reactions and only under certain experimental conditions.     

Trophoblast-uterine interactions at implantation

Implantation of the embryo in the uterus is a critical and complex event and its failure is widely considered an impediment to improved success in assisted reproduction. Depending on whether placentation is invasive or superficial (epitheliochorial), the embryo may interact transiently or undergo a prolonged adhesive interaction with the uterine epithelium. Numerous candidate interactions have been identified, and there is good progress on identifying gene networks required for early placentation. However no molecular mechanisms for the epithelial phase are yet firmly established in any species. It is noteworthy that gene ablation in mice has so far failed to identify obligatory initial molecular events.     

A two-sex polygenic model for the evolution of premating isolation. I. Deterministic theory for natural populations

It is proposed that mating behavior is normally determined by independent genetic systems in the male and female. A specific model is put forward in which mating behavior is determined by additive gene contributions in both sexes, and the strength of mating attraction is maximized when mating "scores" in the two sexes are equalized. This type of model, which may be described as a "facilitation" model, is related to models proposed by a number of authors. It is pointed out that a second class of models exists, "avoidance" models, and that these, although less tractable analytically, could be more realistic.-An organism is assumed to be divided into two strains, and selection is introduced through lethality or sterility of the hybrid (postmating isolation). The selective tendency for divergence of mating behavior in one sex is then shown to be proportional to the amount of divergence that already exists in the opposite sex, multiplied by a quantity that can be described as the heritability of mating attraction. The situation in which no initial divergence exists in either sex constitutes an equilibrium that is unstable, but one that requires substantial deviations before any selective progress can be made. Thus, the evolution of premating isolation to reinforce postmating isolation may be an inefficient process. The process would occur much more efficiently if some initial chance divergence in mating behavior occurred during the period in which postmating isolation evolved.     

Kinetic analysis of enzymatic chiral resolution by progress curve evaluation

The present study deals with kinetic modeling of enzyme-catalyzed reactions by integral progress curve analysis, and shows how to apply this technique to kinetic resolution of enantiomers. It is shown that kinetic parameters for both enantiomers and the enantioselectivity of the enzyme may be obtained from the progress curve measurement of a racemate only.A parameter estimation procedure has been established and it is shown that the covariance matrix of the obtained parameters is a useful statistical tool in the selection and verification of the model structure. Standard deviations calculated from this matrix have shown that progress curve analysis yields parameter values with high accuracies.Potential sources of systematic errors in (multiple) progress curve analysis are addressed in this article. Amongst these, the following needed to be dealt with: (1) the true initial substrate concentrations were obtained from the final amount of product experimentally measured (mass balancing); (2) systematic errors in the initial enzyme concentration were corrected by incorporating this variable in the fitting procedure as an extra parameter per curve; and (3) enzyme inactivation is included in the model and a first-order inactivation constant is determined.Experimental verification was carried out by continuous monitoring of the hydrolysis of ethyl 2-chloropropionate by carboxylesterase NP and the alpha-chymotrypsin-catalyzed hydrolysis of benzoylalanine mathyl ester in a pH-stat system. Kinetic parameter values were obtained with high accuracies and model predictions were in good agreement with independent measurements of enantiomeric excess values or literature data. (c) 1994 John Wiley & Sons, Inc.     

Kinetic studies of enzymatic hydrolysis of insoluble cellulose: (II). Analysis of extended hydrolysis times

The kinetics of enzymatic hydrolysis of pure insoluble cellulose by means of unpurified culture filtrate of Trichoderma reesei was studied, emphasizing the kinetic characteristics associated with the extended hydrolysis times. The changes in the hydrolysis rate and extent of soluble protein adsorption during the progress of reaction, either apparent or intrinsic, were investigated. The hydrolysis rate declined drastically during the initial hours of hydrolysis. The factors causing the reduction in the hydrolysis rate were examined; these include the transformation of cellulose into a less digestible form and product inhibition. The structural transformation can be partially explained by changes in the crystallinity index and surface area. The product inhibition was caused by the deactivation of the adsorbed soluble protein by the products, which essentially represents the so-called "un-competitive" inhibition. The kinetics of beta-glucosidase were also studied. The result has shown that the action of beta-glucosidase is competitively inhibited by glucose. It has been found that the integrated form of the initial rate expression cannot be used in predicting the progress of reaction because the digestibility of cellulose changes drastically as the hydrolysis proceeds, and that the rate expression for enzymatic hydrolysis of cellulose cannot be simplified or approximated by resorting to the pseudo-steady-state assumption. A mechanistic kinetic model of cellulose hydrolysis should include the following major influencing factors: (1)mode of action of enzyme, (2) structure of cellulose, and (3) mode of interaction between the enzyme and cellulose molecules.     

The reliability of Michaelis constants and maximum velocities estimated by using the integrated Michaelis–Menten equation

1. Experimental progress curves were simulated for a reaction obeying Michaelis-Menten kinetics. 2. K(m) and V were estimated (a) by fitting the integrated Michaelis-Menten equation to the progress curves, and (b) from the initial slopes of the curves (i.e. from initial velocities). 3. The integrated equation could not be fitted successfully by a non-linear method, so it was transformed and fitted by a linear method. 4. Provided that the initial substrate concentration was greater than K(m) and the data were precise enough, the integrated equation gave parameter estimates which were unbiased and as reliable as those derived from initial velocities although based on fewer experiments. 5. The integrated equation could be used for progress curves of unknown origin.     

A characterization of the preaggregative period of Dictyostelium discoideum

The preaggregative period of Dictyostelium discoideum has been characterized by measuring the reduction in time for the onset of aggregation under conditions which hinder close cell-cell associations, inhibit protein synthesis, and/or include continuous high concentrations or pulsed low concentrations of exogenous cAMP. The results demonstrate that: the preaggregative period (normally 7 hr for cells from log phase cultures) can be dissected into two distinct components: an initial component which includes the first 4.5 hr, and a second component which includes the last 2.5 hr; the first component will progress at normal rate in the continuous absence of close cell-cell associations (as single amoebae in suspension) or in the continuous absence of de novo protein synthesis; the second component will not progress in the continuous absence of close cell-cell associations or de novo protein synthesis; high concentrations of cAMP continuously present in suspension cultures do not affect progress through the first component, nor do they support progress through the second component; however, if cells are allowed to form close cell-cell associations during progress through the first component, high concentrations of cAMP will support progress through the second component in the absence of close cell-cell associations; these associations, which render cells sensitive to cAMP, will occur in the absence of de novo protein synthesis and before the acquisition of contact sites A; these associations may be completely bypassed if suspended cells are continuously pulsed with low concentrations of cAMP; in this case, pulses of cAMP will support progress through the final component in continuous suspension cultures; and the acquisition of contact sites A will not occur in the absence of progress through the second component; in contrast, the acquisition of cAMP binding sites on the cell's surface will occur. These results are considered in terms of the complexity and regulation of the preaggregative period of Dictyostelium.     

Two-locus theory in recurrent selection for general combining ability in maize

Summary Two-locus theory for recurrent selection for general combining ability in maize was developed. The theory featured: (a) recombination of the selfed progeny of selected parents; and (b) linkage disequilibrium in the initial gametic array. The theory indicated: (a) that initial linkage disequilibrium exerts a permanent influence upon selection progress; (b) that interposition of one or more generations of random mating before each cycle reduces the permanent effect in ensuing cycles; and (c) that random mating done before initiation of selection is more efficient in removing the influence of linkage disequilibrium on selection progress than random mating done between subsequent cycles.     

Meeting report on protein particles and immunogenicity of therapeutic proteins: Filling in the gaps in risk evaluation and mitigation

This meeting was successful in achieving its main goals: (1) summarize currently available information on the origin, detection, quantification and characterization of sub-visible particulates in protein products, available information on their clinical importance, and potential strategies for evaluating and mitigating risk to product quality, and (2) foster communication among academic, industry, and regulatory scientists to define the capabilities of current analytical methods, to promote the development of improved methods, and to stimulate investigations into the impact of large protein aggregates on immunogenicity. There was a general consensus that a considerable amount of interesting scientific information was presented and many stimulating conversations were begun. It is clear that this aspect of protein characterization is in its initial stages. As the development of these new methods progress, it is hoped that they will shed light on the role of protein particulates on product quality, safety, and efficacy. A topic which seemed appropriate for short term follow up was to hold further discussions concerning the development and preparation of one or more standard preparations of protein particulates. This would be generally useful to facilitate comparison of results among different studies, methods, and laboratories, and to foster further development of a common understanding among laboratories and health authorities which is essential to making further progress in this emerging field.     

Free oxygen and evolutionary progress.

A conception of the origin of multicellularity and respiration is presented. It is assumed that the evolution of aerobic life was a phased process. The most important milestones of the process were the appearance, at first, of aerotolerance factors (catalase, peroxidase, Superoxide dismutase), and later, of an aerobic-type energy system (respiratory chain). The consecutive steps of morphophysiological progress are associated with the origin of these enzymes and enzyme systems. The advent of catalase could have given rise to the phenomenon of multicellularity on the basis of complementation of the catalase containing (deprived of another, initial enzyme, essential for the survival of cells) and catalase non-containing (preserving this initial “wild” enzyme) cells. The presence of catalase in multicellular heterotrophic fermenters led to their acquisition of photosynthesizing symbionts—protoplastids (which did not have their own catalase). The occurrence of energetically or physiologically expedient reactions in aerotolerant organisms utilizing free oxygen, did not balance the global effects of photosynthesis (an excessive accumulation of organic matter and oxygen, and a shortage of carbon dioxide). An equilibrium between organic synthesis and destruction processes was restored in the biosphere after the emergence of phosphorylative respiration. The great resemblance of enzyme systems and phosphorylation mechanisms in photosynthesis and respiration suggests that the respiratory assemblies were not created by nature anew, but evolved by way of inversion of the photosynthesizing apparatus in a part of protoplastids which had lost their capacity for photosynthesis (because of the termination of the supply of the radiant energy). The complication of the symbiosis of heterotrophs and photosynthesizers by the rise of a “third element”—protomitochondria —opened up new opportunities, the use of which could have led to a great diversification of cellular forms and thus promoted evolutionary progress.     

三叉神经痛的临床治疗进展

三叉神经痛是一种常见的面部疼痛性疾病,目前对其病因的认识并不明确。普遍认为压迫可导致三叉神经痛,致病原因包括血管因素和非血管因素,其次创伤也可导致三叉神经痛,常见于口腔外科手术后。三叉神经痛的治疗方法较多,首选药物治疗,包括全身用药和局部用药,药物治疗初期效果明显,但很难治愈三叉神经痛,而且需要长期服药,副作用较大,当药物治疗无效或者患者难以耐受其副作用时,可采用外科疗法进行辅助治疗。三叉神经痛的外科疗法主要包括无创的微血管减压术及有创的射频热凝术、球囊压迫术和甘油毁损术。近年来采用放射外科对三叉神经痛进行治疗,取得了确切效果。此外,还有一些关于其他治疗方法的文献报道,均有一定效果。本文对三叉神经痛病因的认识及临床治疗进展作一回顾性综述。     

Effects of after-ripening and gibberellic acid on the thermoinduction of seed germination in Solarium melongena

Daily alternating temperatures or a short exposure to low orhigh temperatures were necessary for the germination of eggplantseeds at the initial stage of after-ripening. But requirementsbecame less strict with the progress of after-ripening, andafter 4 to 8 months of afterripening, germination occurred easilyboth at constant (20 and 25) and daily alternating temperatures(30 for 16hrs and then 20 for 8hrs). With further progress in after-ripening, however, daily alternatingtemperatures or a short exposure to low or high temperaturesbecame again indispensable for attaining a high percentage ofgermination. The progress of after-ripening was greatly influencedby the degree of seed ripening, that is, by the period beforethe seeds were sampled from fruits after anthesis (ripening). The effect of GA on the germination of egg plant seeds varieddepending on the concentration of GA, temperature and the degreeof maturity (ripening and after-ripening) of the seeds. (Received March 8, 1968; )     

The prospects for vaccines against HIV-1: more than a field of long-term nonprogression?

More than 20 years have passed since the human immunodeficiency virus (HIV)-1 was identified as the cause of AIDS (acquired immune deficiency syndrome). With rapid early progress, the development of a vaccine was predicted within 2-10 years. However, over two decades later, we have seen only a single vaccine candidate complete Phase III clinical efficacy trials. These trials showed the vaccine was not able to protect the trial volunteers from HIV infection or subsequently modify the early clinical progression. It is now accepted that the initial optimism in the field was misguided, as the complexity of the problem stretched beyond the known horizons of vaccinology, immunology and retrovirology. In the intervening 20 years, unprecedented research efforts have pushed the cutting edge of these fields forward to such a degree that we are better able to put the problem of developing a vaccine for HIV-1 into context. Now it is time to examine the prospects for HIV-1 vaccines and ascertain whether real progress is being made.     

Fractionation of unlabeled and radioactive nucleotides by ionophoresis in two dimensions on a flat plate

Difficulties in determining the initial velocities of enzyme reactions during which the enzyme is itself inactivated have been considered. The problems are increased in pH-stat assays where the progress curves do not, in general, pass through the origin.Several methods of fitting such data are given. The most general solution requires fitting the results of the assays to an exponential. Simpler solutions, which can be handled on a small computer or even on a desk calculator are valid under certain conditions.     

Modelling to explore the potential impact of asymptomatic human infections on transmission and dynamics of African sleeping sickness

Gambiense human African trypanosomiasis (gHAT, sleeping sickness) is one of several neglected tropical diseases (NTDs) where there is evidence of asymptomatic human infection but there is uncertainty of the role it plays in transmission and maintenance. To explore possible consequences of asymptomatic infections, particularly in the context of elimination of transmission—a goal set to be achieved by 2030—we propose a novel dynamic transmission model to account for the asymptomatic population. This extends an established framework, basing infection progression on a number of experimental and observation gHAT studies. Asymptomatic gHAT infections include those in people with blood-dwelling trypanosomes, but no discernible symptoms, or those with parasites only detectable in skin. Given current protocols, asymptomatic infection with blood parasites may be diagnosed and treated, based on observable parasitaemia, in contrast to many other diseases for which treatment (and/or diagnosis) may be based on symptomatic infection. We construct a model in which exposed people can either progress to either asymptomatic skin-only parasite infection, which would not be diagnosed through active screening algorithms, or blood-parasite infection, which is likely to be diagnosed if tested. We add extra parameters to the baseline model including different self-cure, recovery, transmission and detection rates for skin-only or blood infections. Performing sensitivity analysis suggests all the new parameters introduced in the asymptomatic model can impact the infection dynamics substantially. Among them, the proportion of exposures resulting in initial skin or blood infection appears the most influential parameter. For some plausible parameterisations, an initial fall in infection prevalence due to interventions could subsequently stagnate even under continued screening due to the formation of a new, lower endemic equilibrium. Excluding this scenario, our results still highlight the possibility for asymptomatic infection to slow down progress towards elimination of transmission. Location-specific model fitting will be needed to determine if and where this could pose a threat.     

小细胞肺癌分子标记物研究进展

肺癌仍然是现在最常见的恶性肿瘤之一。小细胞肺癌(Smallcelllungcancer,SCLC)是肺癌中恶性程度最高的一种类型,与吸烟密切相关,其较早发生远处转移和播散导致预后差,目前的主要治疗手段有手术、化学治疗、放射治疗。但其具有初始化放疗敏感,却很快耐受的特点,导致了它总体预后不良,生存期短。如何寻求一种有效的疾病预后、疗效判断标记物,显得尤为重要。本文主要介绍近年来在小细胞肺癌中分子标记物的研究进展,包括神经内分泌的相关蛋白、凋亡蛋白抑制剂(Survivin)、相关酶类及膜蛋白,这些分子标记物与小细胞肺癌疾病的进展、预后密切相关,能够为临床的疾病治疗评估提供潜在可行的方法。但是,这些标记物仍存在特异性不高的问题,最终应用于临床实践,仍需要更多的临床研究。