Flavonoids and the taxonomy of Camarea (Malpighiaceae)

Camarea is a South-American endemic genus comprising eight species. In the present work leaf flavonoids of seven species of Camarea were identified, aiming to evaluate the usefulness of their distribution as a taxonomic aid. A total of 12 flavonoids were isolated and identified. Free aglycones, such as apigenin, chrysoeriol, kaempferol and quercetin, as well as 7-O-glycosides of apigenin and luteolin, 3-O-glycosides of kaempferol and quercetin were identified. Flavonoid distribution in Camarea species, taking into account aglycones and aglycone moieties of glycosides, was used to obtain a phenogram of chemical affinities. Apigenin, chrysoeriol and kaempferol were the main discriminating characters for links establishment. The resultant tree suggests the links: 1) Camarea hirsuta, Camarea affinis and C. affinis × C. hirsuta; 2) Camarea elongata and Camarea axillaris; 3) Camarea sericea and Camarea humifusa. The results are in agreement with morphological similarities and disagree with several points of n-alkane evidence. The results support the recognition of Camarea triphylla as synonymy of C. axillaris.     

Cytochemical Study on the Dormancy-imposing Endosperm of Cercis siliquastrum

Cytochemical observations indicate the occurrence of leucoanthocyanidinsin the protein bodies of Cercis siliquastrum endosperm; theendosperm cell walls give a positive Mayer's test, indicatingmucopolysac-charides. These results are discussed in relationto the endosperm-imposed dormancy of the seed. Cercis siliquastrum, endosperm-imposed dormancy, leucoanthocyanidins, mucopolysac-charides     

Study of galactoglucomannans from the seed of Cercis canadensis L

Galactoglucomannans were isolated by selective precipitation from aqueous and alkaline extracts of endosperm and hulls of Cercis canadensis, a member of the family Fabaceae. Their monosaccharide composition (Man: Gal: Glu) was as follows: 10.4: 0.9: 1 (polysaccharide from the endosperm) and 4.5: 0.9: 1 (polysaccharide from the hulls). The identity of IR spectra was indicative of the commonness of their structure. Analysis of the structure of the galactoglucomannan from endosperm by 13C NMR spectroscopy showed that its main chain consisted of 1,4-beta-D-manno- and 1,4-beta-D-glucopyranose. Part of mannose residues in the chain were substituted at C6 with single residues of alpha-D-galactopyranose. Galactoglucomannans are located in different part of the seed and implement different functions.     

Chemistry and taxonomy of the cunoniaceae

The inclusion of the Cunoniaceae within a rosalean alliance is unquestioned, but its position in such an alliance is uncertain. In respect of proanthocyanidins, flavonols, ellagitannins and absence of iridoids the most closely similar taxa are Saxifragaceae-Saxifragoideae and Rosaceae-Rosoideae, but in their xerophytic, arborescent habit and present and past southern hemisphere distribution the Cunoniaceae are very different from either. In these (but not in chemical) respects an analogy can be found in the Proteaceae, and a detached position similar to that assigned to this family in Dahlgren's system seems appropriate for the Cunoniaceae.     

紫荆属的系统发育和生物地理学研究

紫荆属（Cercis L.）约含8种,间断分布于亚洲东、西部、欧洲南部和北美。应用核糖体DNA的ITS基因序列研究紫荆属的系统发育关系。在最简约性分析,北美的两个种和南欧、西亚的一个种构成一单系群而隐藏于东亚的种类中。这表明紫荆属北美的种类和南欧、西亚的种类之间的关系比它们的各自与东亚的种类的关系要密切。研究还发现北美洲东、西部的种类可能具较近亲缘。紫荆属以白令陆桥或北大西洋陆桥为迁移途径的可能性似乎都不能排除;北半球的生物地理分布式样可具有复杂的起源。     

A specification of numerical taxonomy: Thermodynamical taxonomy

Thermodynamic taxonomy (ThT) is established from both a theoretical and pragmatical point of view. An application of thermodynamic taxonomy is given.     

The web and the structure of taxonomy

An easily accessible taxonomic knowledge base is critically important for all biodiversity-related sciences. At present, taxonomic information is organized and regulated by a system of rules and conventions that date back to the introduction of binomial nomenclature by Linnaeus. The taxonomy of any particular group of organisms comprises the sum information in the taxonomic literature, supported by designated type specimens in major collections. In this article, the way modern means of disseminating information will change the practice of taxonomy, in particular the Internet, is explored. Basic taxonomic information, such as specimen-level data, location of types, and name catalogues are already available, at least for some groups, on the Web. Specialist taxonomic databases, key-construction programs, and other software useful for systematists are also increasingly available. There has also been a move towards Web-publishing of taxonomic hypotheses, though as yet this is not fully permitted by the Codes of Nomenclature. A further and more radical move would be to transfer taxonomy completely to the Web. A possible model of this is discussed, as well as a pilot project, the "CATE" initiative, which seeks to explore the advantages and disadvantages of such a move. It is argued that taxonomy needs to forge better links with its user-communities to maintain its funding base, and that an important part of this is making the products of its research more accessible through the Internet.     

The taxonomy and biogeography of the Cladocera

For a variety of reasons, including the analysis of a number of taxa having the same names on different continents, we have concluded overwhelmingly that the chydorid Cladocera are not cosmopolitan in distribution but instead are restricted to smaller regions by their specific ecological requirements for habitat type and also by long-term events in earth history. Recent study ofChydorus faviformis and species resembling it indicates there has been no effective exchange of genetic material between North America and South America, nor between Australia and Asia, nor even between China, Malaysia, and India in southern Asia. Moreover, the patterns of distribution are even narrower than this, as in North America, for example, taxa having the same names in the southern states as in the northern states are differentiated at the species level in some instances, possibly in most. Southern species push northward along the Atlantic Coast for varying distances, one species having reached Nova Scotia and Newfoundland probably during the warm interval in mid-Postglacial time. Thus, when species are studied closely to define their morphological limits, cosmopolitanism disappears, and patterns of distribution emerge that are very similar to those of other animals and plants. The ‘species’ that have been claimed to be cosmopolitan are being shown to be groups or complexes of morphologically similar species instead, each member species of which has a much more restricted distribution than the group or complex as a whole. To explain how the different continents can have such similar lists of ‘species’ without intercontinental dispersal of resting eggs occurring almost continuously, we are suggesting plate tectonics and the drifting of continents, either apart or together.     

The taxonomy of the genusFrankia

Summary A discussion covering the problems ofFrankia taxonomy was held at the Frankia Workshop in Wageningen, September 4–6, 1983. It was agreed that the genusFrankia can be satisfactorily defined, but that solid criteria for species determination are not now available and that use of specific names should be avoided for the present.     

Caryology and taxonomy of the Catarrhine monkeys

The number and the morphology of chromosomes are a characteristic of the species. Knowledge of the mechanisms of chromosome breakage and rearrangement offers the possibility of understanding caryotype evolution. On the basis of this knowledge, we can trace the phylogeny and organize the taxonomy of a group of living forms. In the present paper, the available data on the number and morphology of the chromosomes of the Catarrhine monkeys have been analyzed from the standpoint of taxonomy and evolution. According to this karyological revision, the suborder Catarhine might be divided into two groups (superfamilies): Cercopithecoidea and Hominoidea. Within the Cercopithecoidea the following main groups should be further distinguished: 1. a group which includes all the species of the genus Cercopithecus; 2. a group which includes the different species belonging to the genera Papic, Macaca, Theropithecus and Cercocebus; 3. a group which includes the genus Colobus, Presbytis and Hylobates. Within the Hominoidea, the three anthropoid apes (Pan, Pongo, Gorilla) can be distinguished from man by the difference in the number of chromosomes. Moreover, among the anthropoid apes, the Orang-outang can be differentiated from the others by the morphology of the chromosomes.     

Rational taxonomy and the natural system

Since Darwin's theory of evolution by natural selection, the idea of descent with modification came to dominate systematics, and so the study of morphology became subgugated to the reconstruction of phylogenies. Reinstating the organism in the theory of evolution (Ho &; Saunders, 1979; Webster &; Goodwin, 1982) leads to a project inrational taxonomy (Ho, 1986, 1988a), which attempts to classify biological forms on the basis of transformations on a given dynamical structure. Does rational taxonomy correspond to thenatural system that Linnaeus and his contemporaries as well as all pre-Darwinian morphologists had in mind? Here, we examine how rational taxonomy and the natural system can coincide in the dynamics of processes generating forms during development, which conferexclusivity, genericity androbustness to the forms that do exist. We use the example of segmentation, especially inDrosophila, as an illustration to explore the implications of rational taxonomy for evolution and systematics, and the relationship between ontogeny and phylogeny.     

Enzyme composition and the taxonomy of Acanthamoeba

The enzyme activities of 37 representative strains of Acanthamoeba against 19 substrates have been examined. A total of 13 enzyme complements were identified, which could be arranged in six larger groups. There was good agreement between these groupings and the arrangement of the strains that was suggested by the electrophoresis patterns of their esterases and acid phosphatases. A numericlature is described which provides an unequivocal numerical label for each enzyme complement.     

Carbohydrate composition and taxonomy of the genusDipodascus

Carbohydrates released during acid hydrolysis of intact cells ofDipodascus were studied by gas-liquid chromatographic analysis as their trimethylsilyl derivatives. In addition, cells were characterized by pyrolysis gas-liquid chromatography and pyrolysis mass spectrometry. The data obtained support the classification ofDipodascus uninucleatus in a separate genusDipodascopsis. Glucuronic acid is present inD. uninucleatus and, therefore, a possible affinity to fungi classified in the Zygomycetes is considered.Dipodascus aggregatus andDipodascus australiensis were found to be rather different, but very close toGeotrichum candidum and related species.     

Phylogeny and taxonomy of the genus Cylindrocladiella

The genus Cylindrocladiella was established to accommodate Cylindrocladium-like fungi that have small, cylindrical conidia and aseptate stipe extensions. Contemporary taxonomic studies of these fungi have relied on morphology and to a lesser extent on DNA sequence comparisons of the internal transcribed spacer regions (ITS 1, 2 and 5.8S gene) of the ribosomal RNA and the ??-tubulin gene regions. In the present study, the identity of several Cylindrocladiella isolates collected over two decades was determined using morphology and phylogenetic inference. A phylogeny constructed for these isolates employing the ??-tubulin, histone H3, ITS, 28S large subunit and translation elongation factor 1-alpha gene regions resulted in the identification of several cryptic species in the genus. In spite of the 18 new Cylindrocladiella species described in this study based on morphological and sequence data, several species complexes remain unresolved.     

Toward genetics-based virus taxonomy: comparative analysis of a genetics-based classification and the taxonomy of picornaviruses

Virus taxonomy has received little attention from the research community despite its broad relevance. In an accompanying paper (C. Lauber and A. E. Gorbalenya, J. Virol. 86:3890-3904, 2012), we have introduced a quantitative approach to hierarchically classify viruses of a family using pairwise evolutionary distances (PEDs) as a measure of genetic divergence. When applied to the six most conserved proteins of the Picornaviridae, it clustered 1,234 genome sequences in groups at three hierarchical levels (to which we refer as the "GENETIC classification"). In this study, we compare the GENETIC classification with the expert-based picornavirus taxonomy and outline differences in the underlying frameworks regarding the relation of virus groups and genetic diversity that represent, respectively, the structure and content of a classification. To facilitate the analysis, we introduce two novel diagrams. The first connects the genetic diversity of taxa to both the PED distribution and the phylogeny of picornaviruses. The second depicts a classification and the accommodated genetic diversity in a standardized manner. Generally, we found striking agreement between the two classifications on species and genus taxa. A few disagreements concern the species Human rhinovirus A and Human rhinovirus C and the genus Aphthovirus, which were split in the GENETIC classification. Furthermore, we propose a new supergenus level and universal, level-specific PED thresholds, not reached yet by many taxa. Since the species threshold is approached mostly by taxa with large sampling sizes and those infecting multiple hosts, it may represent an upper limit on divergence, beyond which homologous recombination in the six most conserved genes between two picornaviruses might not give viable progeny.