Microbial biomass and bacteria in two pasture soils: An assessment of measurement procedures,temporal variations,and the influence of P fertility status

The reliability of three methods (microbial C and mineral-N flush by fumigation-incubation, and ATP) for measuring soil microbial biomass was assessed on two silt-loam soils of different P fertility status under grazed perennial pastures. The mineral-N flush and ATP methods provided a reasonably reliable index of microbial biomass, but the fumigation-incubation procedure for CO₂-C flush, using preincubated samples and an unfumigated 0–10 day control, was inappropriate for these soils. The numbers of bacteria (direct microscopy) and the percentage metabolically active were also measured. Generally, in both soils, total microbial biomass and the numbers, mass and metabolic activity of bacteria were influenced more by temporal factors in samples taken monthly than by the fertility status. Temporal fluctuations were greater in the high-fertility (Waikanae) soil, but no consistent seasonal trends in mineral-N flush and ATP values were apparent. In both soils, numbers and biomass of bacteria were at a minimum in spring. Values of two biomass indices (mineral-N flush and ATP contents) were similar in the high- and low-fertility (Pomare) soil, and comprised similar percentages of organic-matter contents. The percentages of metabolically active bacteria, however, tended to be higher in Pomare than in Waikanae soil, and, therefore, did not reflect soil fertility status. Methodological and field aspects of these results are discussed.     

Nitrogen mineralization and nitrification during incubation of East Pakistan ‘tea’ soils in relation to pH

Summary A study was made of the effects of increasing pH, by addition of varying levels of calcium carbonate, on N-mineralization and nitrification during aerobic incubation (30°C for 12 weeks) of two tea soils (original pH 4.1 and 4.2) from East Pakistan. Mineral-N (NH₃- plus NO₃-N) accumulation increased with pH in both soils. In the low-flat soil maximum nitrate accumulation occurred at pH 5.0, whilst at the higher pH levels mineral-N accumulated mainly as ammonia-N. In the high-flat soil nitrate accumulation increased considerably with pH; mineralized-N was accounted for largely as ammonia at pH 5.0 or less, and almost entirely as nitrate at higher pH levels. Results are discussed in relation to possible occurrence of heterotrophic nitrification in these soils.     

Effect of temperature and time of storage of dry soil samples on a chemical index of N availability

Summary The effect was studied of storage temperature on the index of available soil N wich uses U.V. absorbance of a 0.01M NaHCO₃ extract as an indicator. The U.V. absorbance was found to increase at a non-linear rate for four soils stored at temperatures of 50, 75, and 150°C. The change in extract absorbance due to extended soil storage at each of these temperatures was positively correlated to the percent organic matter, percent N, C/N value and concentration of humic substances in soils, but not to the extract absorbance prior to soil storage. These findings were not consistent with room temperature storage data which showed a linear increase in extract absorbance with soil storage time. The change in absorbance for the room temperature case was not related to any of the soil parameters mentioned above. Analysis of a soil stored at 105°C showed an increase in ninhydrin-detectable N, protein N and Kjeldahl N of the NaHCO₃ extract, while the apparent molecular weight distribution of extracted organic matter (as determined by gel filtration) showed only a slight change. As a comparison to the NaHCO₃ extract, a boiling CaCl₂ extract of the same soil was also analyzed; and the absorbance at 260 nm was found to increase in a curvilinear fashion with starage time at 75°C but to less of an extent than was noted with the NaHCO₃ extract. Nitrogen availability indexes based on the U.V. absorbance of these extracts, particularly those utilizing the NaHCO₃ extract, would be significantly affected by soil storage at elevated temperatures.Paper No. 6176 of the J. Ser. of the Pennsylvania Agric. Exp. Stn. Authorized for publication January 26, 1981.     

Growth analysis of soil-grown spinach plants at different N-regimes

Spinach plants were grown in pots under controlled conditions in three different soils (a loamy sand, a silt loam at low mineral-N level and a silt loam at the double mineral-N level). The nitrogen uptake pattern varied considerably between the three soil types and was used to validate an equation between the relative growth rate and nitrogen content. This equation is based on the growth response of spinach plants grown hydroponically at equal environmental conditions either at optimum nitrogen supply (complete nutrient solution) or with a relative nitrate addition rate of 0.30 day^–1, 0.225 day^–1 or 0.15 day^–1 effecting an exponential increase in nitrogen uptake. Growth in potted soil was slightly overestimated. Part of this bias was explained by the lower shoot weight ratio observed for the soil grown plants. This was demonstrated by the improvement in growth predictions when using net assimilation rate rather than relative growth rate as the driving variable in the model.     

Behavior of fresh vs. aged chemicals in soil

Existing data indicate that chemicals freshly added to soils are more amenable to losses, including biodegradation, than chemicals that have been in contact with soils for extended periods of time. This review presents the results of studies that indicate that increased soil‐chemical contact time increased the resistance of chemicals to desorption, volatilization, biodegradation, and extraction. Thus, results from studies conducted on chemicals freshly added to soils should not be used to predict the behavior of chemicals that have been in contact with soils for extended periods of time. In addition, a measure of the total chemical concentration present in a soil does not adequately indicate the availability of the chemicals for biodegradation or release, and does not indicate the potential for the chemical to be transported to and have an adverse effect on a human or ecological receptor.     

Microbial activity and diversity during extreme freeze–thaw cycles in periglacial soils, 5400 m elevation, Cordillera Vilcanota, Perú

High-elevation periglacial soils are among the most extreme soil systems on Earth and may be good analogs for the polar regions of Mars where oligotrophic mineral soils abut with polar ice caps. Here we report on preliminary studies carried out during an expedition to an area where recent glacial retreat has exposed porous mineral soils to extreme, daily freeze–thaw cycles and high UV fluxes. We used in situ methods to show that inorganic nitrogen (NO₃ ⁻ and NH₄ ⁺) was being actively cycled even during a period when diurnal soil temperatures (5 cm depth) ranged from −12 to 27°C and when sub-zero, soil cooling rates reached 1.8°C h⁻¹ (the most rapid soil cooling rates recorded to date). Furthermore, phylogenetic analyses of microbial phylotypes present at our highest sites (5410 m above sea level) showed the presence of nitrifying bacteria of the genus Nitrospira and newly discovered nitrite-oxidizing Betaproteobacteria. These soils were overwhelmingly dominated (>70% of phylotypes) by photosynthetic bacteria that were related to novel cyanobacteria previously found almost exclusively in other plant-free, high-elevation soils. We also demonstrated that soils from our highest sites had higher potential for mineralizing glutamate and higher microbial biomass than lower elevation soils that had been more recently covered by ice. Overall, our findings indicate that a diverse and robustly functioning microbial ecosystem is present in these previously unstudied high-elevation soils.     

Effect of seed extracts of <Emphasis Type="Italic">Withania somnifera,Croton tiglium</Emphasis> and <Emphasis Type="Italic">Hygrophila auriculata</Emphasis> on behavior and physiology of <Emphasis Type="Italic">Odontotermes obesus</Emphasis> (Isoptera,Termitidae)

In addition to antibiotic properties, medicinal plants are important sources of chemicals with potential application as pesticides. The present study deals with antitermitic potential of seed extracts of Withania somnifera (Indian ginseng), Croton tiglium (jamalgoota) and Hygrophila auriculata (talimkhana). The seed extracts caused changes in tunneling behaviour, number of bacterial colonies in hindgut and activities of enzymes in midgut of Odontotermes obesus. C. tiglium showed the lowest LT₅₀ (12.85 and 2.65 h) among the three seed extracts at concentrations of 50% (half dilution of the extract) and 100% (extract without dilution), respectively. There was no tunneling in soil treated with 100% concentration of seed extracts of W. somnifera and C. tiglium. Numbers of bacterial colonies in the gut of termites from soils treated with 50% and 100% concentrations of the three plants did not differ significantly, but they differed from those in termites from untreated soil. At 50% concentrations of seed extracts of the tested plants, the difference in hindgut enzyme activities was not obvious, however, at 100% concentrations the enzyme activities in the termites from soils treated with seed extracts significantly differed from controls and differences were also recorded between the plants.     

Simulated nitrogen dynamics and nitrate leaching in a perennial grass ley

A soil nitrogen model was used for a 4-year simulation of nitrogen dynamics and nitrate leaching, both during grass ley growth and after ploughing a grass ley. Model results were compared with field measurements of soil mineral-N status and leaching. A soil water and heat model provided daily values for abiotic conditions, which were used as driving variables in the nitrogen simulation. Simulated values for mineral-N levels in the soil agreed well with field data for the first 3 years of the simulation. During the final year the model predicted considerably higher levels of soil mineral-N content compared with measurements. To reach the mineral-N level measured at the time of ploughing the ley, the simulated N-uptake by plants had to be increased by 8 g N m⁻². Simulations of nitrate leaching suggested that estimates of leaching based on measurements in tile-drained plots can be considerably underestimated. Accurate quantification of leaching in tile-drained plots often requires additional information on water-flow paths. A substantial increase in simulated and measured values for the mineral-N content of the soil occurred after ploughing the ley. In the simulation, most of the increase was due to a high crop residue input and the absence of a growing crop after ploughing. Litter accumulations in the soil during the 4-year period contributed little to the increase in soil mineral-N.     

Lead Retention by Soils at Field Moisture Contents

The majority of studies pertaining to lead retention by clays and soils have examined the mechanisms, kinetics, and adsorption isotherms using the batch experiment technique that employs solid: water extracts of 1:10 and 1:20. Field soil deposits generally have much lower gravimetric water content ranging between 9 and 45%. Given the wide disparity in the solids: water ratio employed in the batch experiment technique and that prevailing in field deposits, this paper examines the lead retention characteristics of soils at field moisture contents (6%, 13%, and 25%) using artificially lead-contaminated soil specimens. A residually derived (i.e., formed by in-situ weathering of parent rock) red soil was used to prepare the artificially contaminated soil specimens. The impact of variations in clay content on lead retention was examined by diluting the residual soil with various amounts (0 to 60%) of river sand. Soil specimens remolded at 6 and 13% moisture contents produced very stiff to hard soils on compaction, while specimens remolded at 25% moisture content existed in the slurry state. The soil specimens were contaminated with low (30 mg/kg) to high (2500 mg/kg) concentrations of lead ions by remolding them with 160 ppm to 10,000 ppm ionic lead solutions. Lead retention by soils at field moisture contents was determined by extracting the lead from the soil using a water leach test. Experimental results showed that the bulk (71 to 99%) of the added lead was retained by the soil in insoluble form at the field moisture content. Correlations between the amount of lead retained and soil/solution parameters indicated that the amounts of Pb retained at field moisture content is a function of the initial Pb addition, total sand content, effective clay porosity, and soil pH.     

Uptake and leaching of nitrogen from artificial urine applied to grassland on different dates during the growing season

Artificial urine, equivalent to 30 g N m^-2, was applied to replicated plots in a perennial ryegrass (Lolium perenne L.) sward, each plot receiving a single application on one of six dates between July and November 1990. Recoveries of urine-N in herbage up to the end of the growing season in November decreased linearly for consecutive application dates, ranging from 40% of the urine-N applied in July to a negligible proportion of the final application. In contrast, contents of urine-derived N remaining in the soil (to 1-m depth) in November increased from 3% of the N applied in July to 66% for the final application. Almost all of this was present as nitrate + nitrite-N. Only soils that had received urine in September or later contained significantly greater quatities of mineral-N than the control plots. The mineral-N content of soils collected the following April indicated that most of this urine-derived N had been lost from the soil over the winter. Estimates of the quantities of N leached ranged from 0.7 g N m^-2 from untreated plots to 18.6 g N m^-2 from plots treated with urine in November. Although grass yields and N uptakes in March and April provided evidence of a residual effect from the previous year's urine applications, contents of mineral-N and of potentially mineralisable N in urine-treated soils in April were not significantly different from those in untreated soils.     

Long Term Storage of Dry versus Frozen RNA for Next Generation Molecular Studies

The standard method for the storage and preservation of RNA has been at ultra-low temperatures. However, reliance on liquid nitrogen and freezers for storage of RNA has multiple downsides. Recently new techniques have been developed for storing RNA at room temperature utilizing desiccation and are reported to be an effective alternative for preserving RNA integrity. In this study we compared frozen RNA samples stored for up to one year to those which had been desiccated using RNAstable (Biomatrica, Inc., San Diego, CA) and stored at room temperature. RNA samples were placed in aliquots and stored after desiccation or frozen (at −80°C), and were analyzed for RNA Integrity Number (RIN), and by qPCR, and RNA sequencing. Our study shows that RNAstable is able to preserve desiccated RNA samples at room temperature for up to one year, and that RNA preserved by desiccation is comparable to cryopreserved RNA for downstream analyses including real-time-PCR and RNA sequencing.     

Increasing the organic carbon stocks in mineral soils sequesters large amounts of phosphorus

Despite the fact that phosphorus (P) is critical for plant biomass production in many ecosystems, the implications of soil organic carbon (OC) sequestration for the P cycle have hardly been discussed yet. Thus, the aims of this study are, first, to synthesize results about the relationship between C and P in soil organic matter (SOM) and organic matter inputs to soils, second, to review processes that affect the C:P ratio of SOM, and third, to discuss implications of OC storage in terrestrial ecosystems for P sequestration. The study shows that the storage of OC in mineral soils leads to the sequestration of large amounts of organic phosphorus (OP) since SOM in mineral soils is very rich in P. The reasons for the strong enrichment of OP with respect to OC in soils are the mineralization of OC and the formation of microbial necromass that is P‐rich as well as the strong sorption of OP to mineral surfaces that prevents OP mineralization. In particular, the formation of mineral‐associated SOM that is favorable for storing OC in soil over decadal to centennial timescales sequesters large amounts of OP. Storage of 1,000 kg C in the clay size fraction in the topsoils of croplands sequesters 13.1 kg P. In contrast, the OC:OP ratios of wood and of peatlands are much larger than the ones in cropland soils. Thus, storage of C in wood in peatlands sequesters much less P than the storage of OC in mineral soils. In order to increase the C stocks in terrestrial ecosystems and to lock up as little P as possible, it would be more reasonable to protect and restore peatlands and to produce and preserve wood than to store OC in mineral soils.     

Plenary Symposia

Pancreatic acinar cells rapidly lose their characteristic features when cultured in vitro. No successful cryopreservation methods have been reported. To solve the problem of storing pancreatic acinar material, we found that it could be preserved at nonfreezing, cold temperatures: above the freezing point of cell culture medium (−0.6°C) or at typical refrigeration temperatures (6.0–8.0°C) for up to 7 d. Under the conditions we defined, we determined that there was no significant dedifferentiation and no significant decrease in cell health. Good viability and enzyme content were realized after storage, as determined by growth in culture, histological evaluation, and enzyme content by ELISA (lipase and amylase).     

Initial Soil Organic Matter Content Influences the Storage and Turnover of Litter,Root and Soil Carbon in Grasslands

Grassland degradation is a worldwide problem that often leads to substantial loss of soil organic matter (SOM). To estimate the potential for carbon (C) accumulation in degraded grassland soils, we first need to understand how SOM content influences the transformation of plant C and its stabilization within the soil matrix. We conducted a greenhouse experiment using C₃ soils with six levels of SOM content; we planted the C₄ grass Cleistogenes squarrosa or added its litter to the soils to investigate how SOM content regulates the storage of new soil C derived from litter and roots, the decomposition of extant soil C, and the formation of soil aggregates. We found that with the increase in SOM content, microbial biomass carbon (MBC) and the mineralization of litter C increased. Both the litter addition and planted treatments increased the amount of new C inputs to soil. However, the mineralization of extant soil C was significantly accelerated by the presence of living roots but was not affected by litter addition. Accordingly, the soil C content was significantly higher in the litter addition treatments but was not affected by the planted treatments by the end of the experiment. The soil macroaggregate fraction increased with SOM content and was positively related to MBC. Our experiment suggests that as SOM content increases, plant growth and soil microbial activity increase, which allows microbes to process more plant-derived C and promote new soil C formation. Although long-term field experiments are needed to test the robustness of our findings, our greenhouse experiment suggests that the interactions between SOM content and plant C inputs should be considered when evaluating soil C turnover in degraded grasslands.     

接种土壤微生物对铜胁迫下海州香薷生长及光合生理的影响

采用框栽试验方法,模拟Cu胁迫条件下,探讨接种土壤微生物对海州香薷(Elsholtzia splendens)生长和光合生理的影响。结果表明:(1)在Cu胁迫下,海州香薷株数、株高、基径、生物量、茎重比均显著低于对照;与Cu胁迫相比,接种土壤微生物能显著缓解Cu胁迫对海州香薷生长的抑制作用,使植株的株数、株高、生物量、茎重比显著提高。Cu胁迫下,接种土壤微生物均降低了植株体内不同器官Cu含量,茎和叶Cu的累积量显著减少,但对其它器官的Cu含量影响不显著。(2)秋季,各处理的海州香薷的净光合速率(Pn)日变化均呈"单峰"曲线,接种土壤微生物显著提高了Cu胁迫下海州香薷的日均Pn、日均蒸腾速率(Tr),而日均气孔导度(Gs)、日均胞间CO2浓度(Ci)显著降低。(3)Cu胁迫下,接种土壤微生物显著提高了植株的最大净光合速率(Pnmax)、光饱和点(LSP)、表观量子效率(AQY)、最大羧化速率(Vcmax)、最大电子传递速率(Jmax)、磷酸丙糖利用率(TPU),且使光补偿点(LCP)显著降低。表明接种土壤微生物通过提高光能利用率、利用弱光和碳同化能力来增强光合作用能力及有机物的积累,缓解Cu胁迫对海州香薷的毒害。因此,接种土壤微生物可促进Cu胁迫下海州香薷的生长,在重金属污染土壤的植物修复中具有较好的应用潜力。     

Microbial immobilization of cadmium released from CdO in the soil

The effect of microorganisms on the fate of Cd introduced into the soil as cadmium oxide (CdO) was investigated. Cadmium oxide (875 µg Cd per gram of soil) was added to -irradiated (sterile) and non-sterile soils. The soils were incubated for 90 days at 18 °C under aerobic conditions with moisture kept at 60% of water-holding capacity. Half of the samples in each treatment were supplemented with starch (0.5%, w/w) in order to stimulate microbial growth in the non-sterile soil. After various time intervals (7- or 10-day), soil samples from each treatment were extracted with deionized distilled water (ratio 1:40) or 0.25 M CaCl₂ (ratio 1:5). The results indicated that during the incubation period the amount of Cd extracted from the non-sterile soil with either solvent was markedly lower than that extracted from the -irradiated sterile control. The addition of starch to the non-sterile soil reduced the concentration of Cd in the 0.25 M CaCl₂ extracts without affecting the Cd-content in the water extracts. Short-term experiments in which Cd was added to the soil as a solution of Cd(NO₃)₂ indicated that irradiation did not affect the sorption of Cd to the soil. The addition of bacterial mass (1 mg of dry weight g^–1 soil) decreased the amount of Cd extracted with water as well as that extracted with 0.25 M CaCl₂. Under sterile conditions the solubility of CdO in soil extracts was higher than in the other extractants. The addition of glucose (0.5%, w/w) or a glucose/starch mixture (0.5%, w/w of each) to the sterile soil increased the amount of extractable Cd after a short incubation (18 h at 18 °C). The obtained results suggest that primarily physicochemical reactions are involved in dissolving CdO in the soil but that microbial activity may be responsible for the immobilization of the released metal.     

Chemical Extraction of Arsenic and Heavy Metals from Contaminated Soils Under High Temperature and Pressure Conditions in Abandoned Mines in South Korea

The chemical extraction of As and heavy metals from contaminated soils, sampled from the Geopoong and Keumpoong mines in South Korea, was investigated under subcritical conditions. Soil samples from the abandoned mines were heavily contaminated with As, Cd, Cu, Pb, and Zn. The extent of metal removed from the contaminated soils by extractants varied according to the chemical forms of the metals in the soils. When temperature increased, the extraction of As increased accordingly, showing 92-100% removal with 100 mM of NaOH at 300°C. In contrast, the extraction of cationic metals by citric acid and ethylenediaminetetraacetic acid (EDTA) decreased markedly at 200–300°C because their chelating ability was decreased via decarboxylation and dehydration at high temperatures. Furthermore, the extraction of cationic metals was significantly affected by solution pH. Our results suggest that chemical extraction of cationic metals under subcritical conditions may be affected by several factors, including character of metal, type of extracting reagent, existing forms of metal in the soil, temperature, and soil pH.     

Peeking through a frosty window: molecular insights into the ecology of Arctic soil fungi

Fungi are ubiquitous in Arctic soils, where they function as symbionts and decomposers and may affect the carbon balance of terrestrial ecosystems subjected to climate change, and yet little is known about soil fungi at high latitudes. Here we review data from recent molecular studies to determine broad patterns in Arctic soil fungal ecology. The data indicate comparatively high fungal diversity in Arctic soils, with currently no evidence for lower species richness at higher latitudes. The dominant fungi, and particularly ectomycorrhizal-forming fungi, appear to be cosmopolitan species. Arctic soil fungi are capable of growth at sub-zero temperatures, melanized forms are frequent, host specificity is low and there is evidence that community composition alters under experimental warming. Future challenges are to determine the drivers of fungal diversity, whether or not diversity alters at higher latitudes and how apparently cosmopolitan fungi are able to survive the extreme environments encountered in Arctic habitats.     

Status of copper in some calcareous and non-calcareous soils of Egypt

Summary To assess the status of copper in Egyptian soils, surface and subsurface soil samples were collected from various geographical regions of Egypt and of various genesis. The samples were analyzed for the total Cu, water-soluble plus exchangeable as well as the acid-extractable and EDTA-extractable Cu. The total Cu varied between 3.5 and 72.3 ppm. Less than 2% of this copper was in the soluble plus exchangeable form. The highest values of total and soluble plus exchangeable copper were found in the alluvial soils while the sandy soils had the least amounts. This was attributed to the high clay and organic matter content of the alluvial soils in addition to the dominance of montmorillonitic clay minerals in their fine fraction. The calcareous soils showed intermediate values of total and soluble plus exchangeable Cu due to their lower organic matter and clay mineral content. The clay mineralogy of these soils revealed the dominance of illitic and kaolinitic minerals which are relatively poor in Cu and other trace elements.Because of their relatively higher organic matter content, the alluvial soils had a large percentage (up to 43%) of their total Cu in the EDTA extractable form. The calcareous soils, on the other hand, had a large percentage (up to 52%) of their Cu in the acid-extractable form. The EDTA extractable Cu was correlated with the organic matter content of the soils. Since the pH of the EDTA extract was found to be dependent on the CaCO₃ content of the soils, it was suggested that the method be modified so that the final pH of the extract is constant for all soils.     

Studies in soil potassium

Summary The Quantity-Intensity relations of labile K in soil relate the intensity (or availability) of labile K to the amount of labile K present. Several soils have been depleted of K by crops, and enriched or depleted of K by other means. Theforms of the Q/I relations for labile K in these soils are almost unaffected by K-depletion, by the fixation of added K on storage, or by the release or fixation of K by heating. The addition of very large amounts of K may cause transient changes, but these changes disappear on storing the soil.So under field conditions depletion of K or Ca + Mg by crops, and the addition of K in fertilisers, are unlikely to alter the form of the Q/I relations of labile K.The release of fixed K from depleted soils was very slow unless the depleted soils were heated. Fixation of added K was more rapid.