Inhibition of RNA Polymerase by Streptolydigin

TWO antibiotics inhibit RNA synthesis by interacting directly with RNA polymerase. The rifamycin series^1–3 inhibit before RNA chain initiation and are without apparent effect during polymerization. Streptolydigin, however, inhibits initiation and chain elongation^4–9. Using the d(A-T)-directed reaction as a model system¹⁰, we will show that streptolydigin stabilizes the polymerase-template interaction.     

Morphological Transformation of Human Astrocytes by Visna Virus with Complete Virus Production

VISNA, a medium-sized RNA virus, is comparable in mode of maturation and a number of other properties with the RNA tumour viruses^1,2. The virion also carries RNA-dependent DNA polymerase^3–5. This enzyme was first discovered in RNA tumour viruses and thought perhaps unique to them^6–9; but it was subsequently found in a very few other RNA viruses^3,10, where tumorigenicity was not a known attribute. The question whether RNA-dependent DNA polymerase is a hallmark of malignancy therefore remains entirely open.     

Analysis of the membrane-associated poly(A)+RNA in the cytoplasm of dormant Artemia cysts by DNA excess hybridization: Evidence for a nuclear origin

Encysted embryos of Artemia contain latent mRNA, to a large extent associated with a fraction of cytoplasmic membranes. The membranes, purified by EDTA treatment and banding in a sucrose gradient at 1.17 g/cm³, include endoplasmic vesicles and mitochondria. The origin of the membrane-associated poly(A)⁺RNA was therefore investigated. In gel electrophoresis poly(A)⁺RNA from the purified membranes of dormant cysts forms two distinct bands at approx. 3·10⁵ and 5·10⁵ Da. Later during development the lighter component decreases. Nuclei from dormant cysts are devoid of poly(A)⁺RNA, while nuclei from developing embryos (50% emergence) contain a predominant poly(A)⁺RNA component of approx. 5·10⁵ Da. ¹²⁵I-labelled preparations of nuclear DNA and of nuclear and membrane-associated poly(A)⁺RNA were used in reassociation and hybridization experiments with excess nuclear DNA. Poly(A)⁺RNA from the membranes of dormant cysts hybridized to nuclear DNA to the same extent as the nuclear poly(A)⁺RNA from developing embryos. The hybridization of labelled, nuclear poly(A)⁺RNA to nuclear DNA was strongly inhibited by unlabelled membrane RNA from either dormant cysts or developing embryos. It is concluded that the stored, membrane-associated poly(A)⁺RNA in dormant cysts is essentially of nuclear origin. The 5·10⁵-Da component is largely homologous with the corresponding component of nuclear poly(A)⁺RNA at later stages.     

Characterization of the ribonucleic acid synthesized by isolated rat-liver nuclei

1. Isolated rat-liver nuclei incorporated [¹⁴C]UMP into RNA when incubated in the presence of Mg²⁺ and all four ribonucleoside triphosphates. The addition of bentonite to the system diminished the breakdown of the newly synthesized RNA. 2. AMP and CMP were incorporated in the absence of the other added triphosphates, and in the presence of deoxyribonuclease. 3. RNA synthesized in the presence of Mg²⁺ contained a high proportion of CMP and GMP, and sedimented in the regions of ribosomal RNA and of heavier molecules. About 1% of this RNA hybridized with homologous DNA, and hybrid formation was more effectively inhibited by nuclear RNA than by ribosomal RNA. 4. RNA synthesized in the presence of Mn²⁺ plus ammonium sulphate had a composition intermediate between that of ribosomal RNA and of DNA, and about 4% of this RNA formed hybrids with DNA. 5. Less than 2% of the newly synthesized RNA was capable of forming ribonuclease- and deoxyribonuclease-resistant complexes. 6. It was concluded that the newly synthesized RNA arose as a result of an asymmetric process and included both ribosomal and DNA-like species.     

Streptovaricins inhibit Focus Formation by MSV (MLV) Complex

We recently reported that the streptovaricins inhibit the reaction by which DNA is transcribed from the RNA template resident in murine leukaemia virions (MLV)¹. The reports^{2, 3} which first indicated that this DNA polymerase is present in oncogenic RNA viruses have been confirmed and extended^4–8. The enzyme provides a mechanism whereby an RNA virus can insert stable genetic information into a host chromosome. Gallo and co-workers described an RNA dependent DNA polymerase in lymphoblastic leukaemic cells which was inhibited by N-demethylrifampicin⁹ and this antibiotic, together with a number of other rifamycin derivatives, also inhibited the oncogenic viral DNA polymerase¹⁰. Like the streptovaricins, the rifamycins are ansa macrolide antibiotics (Fig. 1).     

Molecular Weight Determination of Sendai RNA by Dimethyl Sulfoxide Gradient Sedimentation

The molecular weight of the large RNA of Sendai virus has been determined by sedimentation analysis in sucrose gradients containing 99% dimethyl sulfoxide (DMSO) to be 2.3 × 10⁶. Sendai RNA recovered from 99% DMSO was found to cosediment with nondenatured Sendai RNA at 46 to 48s in ordinary sucrose gradients. The molecular weight value of 2.3 × 10⁶ is considerably smaller than the estimates of 6 × 10⁶ to 7 × 10⁶ determined under nondenaturing conditions, suggesting a unique structure for Sendai RNA.     

Properties of RNA fractions from nuclei of brain cells which stimulate incorporation of amino acids by brain ribosomes

Abstract— The properties of RNA fractions from nuclei of brain cells which were capable of stimulating amino acid incorporation into proteins of an homologous ribosomal system were investigated. RNA was routinely prepared from crude nuclear preparations of rat brain by a method which involved treatment with sodium dodecyl sulphate and phenol at 65°. The capacity of this preparation to stimulate incorporation of radioactivity from a mixture of 15 l -[¹⁴C]amino acids was greatly enhanced by preliminary incubation of the ribosomal system from brain for 5–20 min. The response was markedly dependent upon the concentrations of ribosomes and of the pH 5 fraction. The optimal level of Mg²⁺ for basal incorporation of amino acids into protein was 8 mm ; however, incorporation in the presence of nuclear RNA was greater at higher concentrations of Mg²⁺. The response to nuclear RNA was also enhanced as the K⁺ concentration was increased from 25 to 100 mm . The stimulatory effect of nuclear RNA on incorporation of l -[¹²C]eucine was either unaltered or depressed by addition of a mixture of 19 l -[¹²C]amino acids each at concentrations, of 10^?8, 10^?2, or 10^?1 mm . Under appropriate conditions of incubation, basal rates of incorporation and rates of incorporation stimulated by nuclear RNA were linear for 30 min. The response was proportional to the concentration of nuclear RNA between 34 and 136 μg. RNA prepared from ribosomes of rat brain essentially failed to stimulate incorporation of amino acids over this range of concentrations. Fractionation of nuclear RNA by centrifugation in sucrose density gradients revealed that 75 per cent of the stimulatory activity was in the fraction which sedimented below 12 S and contained about 25 per cent of the total RNA. Most of the remaining activity was in the 18 S region. Less than 5 per cent of the RNA in the lightest fraction (< 12 S) exhibited amino acid-acceptor activity, The stimulatory action of nuclear RNA on incorporation of amino acids was readily destroyed by mild treatment with pancreatic ribonuclease, whereas amino acid-acceptor activity was relatively resistant to this treatment. The results suggest that the brain may contain low molecular weight RNA with properties of messenger RNA.     

Physical and chemical characterization of RNA incorporated by rabbit spleen cells

Rabbit spleen cells can incorporate a small but measurable amount of radioactively labeled rabbit lymph node RNA. At saturation, each cell can incorporate 4 × 10¹⁰ D of RNA that are resistant to the action of added RNase. Part of the incorporated ³H-RNA is protected from substantial degradation inside the cell for at least a few hours since high mol. wt (S > 12) ³H-RNA can be obtained from host cells upon re-extraction. Incorporated RNA was found in all three subcellular fractions analysed and had a nucleotide composition similar to that of input RNA. When bacterial RNA is used, the incorporation is significantly reduced and the incorporated RNA is rapidly degraded inside the cell. The presence of actinomycin D does not affect these results, indicating that the radioactivity inside the cells is not due to de novo synthesis utilizing degraded RNA.     

Chelation of divalent cations by lomofungin: role in inhibition of nucleic acid synthesis

Lomofungin inhibition of yeast growth and RNA synthesis is prevented by Cu⁺⁺ or Zn⁺⁺ ions which chelate with the antibiotic and prevent its uptake by the cells. EDTA potentiates the inhibition. Mg⁺⁺ ions do not protect $\text{in vivo}$ or against the inhibition of purified bacterial RNA and DNA polymerases. Lomofungin prevents formation of the RNA polymerase. DNA initiation complex, probably by chelation with the firmly bound Zn⁺⁺ of the enzyme.     

Stimulation of RNA synthesis in nucleoli by inorganic phosphate in vitro

The biological function of a phosphoprotein with a molecular weight of 120 000 daltons localized in the nucleoli of mouse ascites sarcoma cells was studied by examining the effect of the phosphoprotein on RNA synthesis in the nucleoli in vitro. The phosphoprotein did not stimulate ribosomal RNA synthesis in vitro. During this study, it was observed that inorganic phosphate enhanced RNA synthesis in the nucleoli in vitro in the presence of either Mn²⁺ or Mn²⁺ plus Mg²⁺ as divalent cations. Inorganic phosphate stimulated the rate of the chain elongation reaction in RNA synthesis.     

Endonucleolytic cleavage of murine leukemia virus 35S RNA by microsome-associated nuclease.

Moloney murine leukemia virus 35S RNA (molecular weight 3 to 3.4 × 10⁶) is cleaved by nuclease activity present in microsomal fractions from MLV infected or uninfected mouse embryo cells to two RNA species of approximate molecular weights 1.8 × 10⁶ and 1.5 × 10⁶. Microsomal fractions from MLV infected and uninfected cells also contained nucleolytic activity that solubilized [³H]poly(A)·poly(U) but not [³H]poly(C) or [³H]poly(U); the cleavage of poly(A)·poly(U) was inhibited by ethidium bromide. The cleavage of MLV RNA was also inhibited by ethidium bromide, suggesting double stranded regions in 35S RNA as the site of cleavage.     

Production of RNA by a marine photosynthetic bacterium, Rhodovulum sp.

The marine photosynthetic bacterium, Rhodovulum sp. PS88, produces RNA not only in cells but also as an extracellular polymeric substance during aerobic continuous cultivation in the dark. At a dilution rate of 0.32–0.5 h^–1, the maximum RNA production was 460 mg RNA l^–1 broth (200 mg RNA g^–1 suspended solids) which is a value about 2–3 times more than that of yeast cells.     

Localization of the 5S RNA genes in Zea mays by RNA-DNA hybridization in situ

5S RNA was extracted from Zea mays tissue and iodinated in vitro with ¹²⁵I to a high specific activity. Acrylamide gel electrophoresis of the ¹²⁵I-5S RNA, 11/2 weeks after iodination demonstrated that most of the 5S RNA molecules were degraded to half-size or smaller. In situ hybridization with this iodinated RNA to pachytene microsporocyte chromosomes showed that the 5S RNA cistrons are located near the end of the long arm of chromosome 2. No obvious association of the 5S locus with the nucleolus was seen during pachytene or later stages.     

Differential RNA Metabolism in Rat Brain Cells Fractionated by Zonal Centrifugation

Combined fractionation and RNA metabolism studies were made on homologous cell types (neurons and glia) banded from rat brain cerebral cortex and hippocampus tissue at 40, 000 rev/min for 50 minutes in a Beckman Ti 14 zonal rotor loaded with a discontinuous methyl cellulose (Methocel) and sucrose density gradient. Comparisons were made on the cellular fractions recovered from animals intracisternally injected with 15 μCi tritiated cytidine (³HCR) RNA precursor one hour before sacrifice and tissue cellular filtrate preparation. Immediate³H pool-correction of extracted³HRNA from the three cellular Bands recovered made possible a mathematically valid measure of³HCR-precursor incorporation into RNA of the different cell types. Comparison of the cellular³HRNA data by analysis of variance revealed the occurrence of differential tritium labelling of RNA in the same cell types banded from different brain regions. In particular, an important advance was demonstrated by the procedures developed in these studies for the quantitative cellular assay of brain in vivo (differential) RNA metabolism.