Synthesis of 2-methyl-5-amino-4-oxo-3-sulfonyl esters as precursors of pseudodipeptides

Summary The synthesis of 2-methyl-5-amino-4-oxo-3-sulfonyl esters, potential precursors of XaaΨ[COCH₂]Ala, XaaΨ[E-CH=CH]Ala and XaaΨ[CH₂CH₂]Ala pseudodipeptides, has been investigated by alkylation of aminoacid-derived β-ketosulfones with ethyl 2-bromo- or 2-triflyloxypropionate in different basic conditions. Yields in 2-methyl-5-amino-4-oxo-3-sulfonyl esters are low but starting β-ketosulfones are recovered in good yield.     

Ab initio computational insight into the ion-pair SN2 reaction of lithium isothiocyanate and methyl fluoride in the gas phase and in acetone solution

The ion-pair S_N2 reaction LiNCS + CH₃F with two mechanisms, inversion and retention, was investigated at the MP2(full)/6-311+G**//HF/6-311+G** level in the gas phase and in acetone solution. All HF-optimized structures were confirmed by vibrational frequency analysis. Based on IRC analyses, eight possible reaction pathways in the title reaction are proposed. The inversion mechanism through a six-membered-ring transition-state structure is the most favorable. Methyl thiocyanate should form preferentially in the gas phase and the more stable methyl isothiocyanate will be the main product in CH₃COCH₃. The retardation of the reaction in CH₃COCH₃ solution was attributed to the differences in the solvation free energies in the separated reactants and transition structures. All of the theoretical results are consistent with the experiment.     

Synthesis and electrochemical study of acetyl- and carbomethoxy-cyclopentadienylcarbonyl chromium complexes

The salts C₅H₄RNa react with Cr(CO)₆ giving the carbonylate salts [η-C₅H₄RCr(CO)₃]Na (RCOCH₃ (1), CO₂CH₃ (2)). By reaction of 1 and 2 with Hg- (CN)₂ the symmetrical mercurials [η-C₅H₄RCr- (CO)₃]₂Hg (RCOCH₃ (3), CO₂CH₃ (4)) are obtained. The oxidation of 1 and 2 with Fe³⁺ gives rise to the dimers [η-C₅H₄RCr(CO)₃]₂ (RCOCH₃ (5), CO₂CH₃ (6)). The compounds are characterized by IR and ¹H NMR spectroscopy.The electrochemical behaviour of these complexes has been studied in THF solution, using cyclic voltammetry and coulometry.     

Ruthenium(III) dimethyl sulfoxide pyridinehydroxamic acid complexes as potential antimetastatic agents: synthesis,characterisation and in vitro pharmacological evaluation

Reaction of 3-pyridinehydroxamic acid and 4-pyridinehydroxamic acid (3-pyha and 4-pyha) with either [NBu₄][RuCl₄(dmso-S)₂] or [(dmso)₂H][RuCl₄(dmso-S)₂] (dmso is dimethyl sulfoxide) in acetone afforded three new ruthenium(III) dimethyl sulfoxide pyridinehydroxamic acid complexes: [NBu₄][trans-RuCl₄(dmso-S)(4-pyha)]·CH₃COCH₃ (1), [3-pyhaH][trans-RuCl₄(dmso-S)(3-pyha)] (2) and [4-pyhaH][trans-RuCl₄(dmso-S)(4-pyha)] (3). The solid-state structure of [NBu₄][trans-RuCl₄(dmso-S)(4-pyha)]·CH₃COCH₃ (1) was determined by X-ray crystallography. 2 and 3 were pharmacologically evaluated for their in vitro cytotoxicity, their ability to inhibit cell invasion and their gelatinase activity. 2 and 3 were devoid of cytotoxicity against the cell lines tested. 2 inhibited invasion of the highly invasive MDA-MB-231 cells to a much greater extent than 3. Contrary to expectations, neither 2 nor 3 had any inhibitory effect on matrix metalloproteinase (MMP) production and/or activity and in fact 3 was found to enhance the production and/or activity of both MMP-2 and MMP-9.     

Mn2+ does not uncouple adenosine "Ra" receptors from the liver adenylate cyclase

Four analogs of oxymorphone, oxymorphaminoethylthiol, oxymorphamino-ethyldisulfide, oxymorphaminoethyl-nitrobenzoic acid disulfide and oxymorphone thiazolidine, as well as the enkephalin analogs, enkephalin-thiol, Tyr-D-Ala-Gly-Phe-Leu-Lys(?-NH)COCH₂CH₂SH and the enkephalin-dimer, [Tyr-D-Ala-Gly-Phe-Leu-Lys(?-NH)COCH₂CH₂S-]₂, were examined for binding to enkephalin and morphine receptors. The analogs gained substantial affinity for enkephalin and lost affinity for morphine receptors. The affinity of the dimers of both opiates and enkephalins was slightly greater than that achieved by the corresponding thiol monomers. However, in the guinea pig ileum the dimeric analogs were much more active than the monomers. Receptor dimerization or cross-linking may be involved in the biological activity of opiates and opioid peptides.     

THE R?LE OF ORGANIC SUBSTRATES IN PHOTOSYNTHESIS OF PURPLE BACTERIA

A representative of the photosynthetic non-sulfur purple bacteria (Athiorhodaceae) capable of using simple alcohols has been isolated in pure culture. By means of quantitative analysis of cultures at different stages of development it has been shown that this organism converts isopropanol quantitatively into acetone, simultaneously reducing CO₂ in the light. The data can be represented by the equation 2 CH₃CHOHCH₃ + CO₂ → 2 CH₃COCH₃ + (CH₂O) + H₂O. Manometric experiments with suspensions of resting cells have fully corroborated the results obtained with growing cultures. The experiments have conclusively proved that an organic substrate may fulfill exclusively the function of hydrogen donor for the photochemical CO₂-reduction in purple bacteria photosynthesis.     

New Metabolites, 2,4,6-Triketosuberic Acid and 2,4,6,8-Tetraketosebacic Acid,Formed from 2-Butyne-1,4-diol by Fusarium merismoides B11

New acidic products were isolated from the culture fluid of Fusarium merismoides B11 after growth on 2-butyne-1,4-diol. These products were identified as 2,4,6-triketosuberic acid, HOOC-CH₂COCH₂COCH₂CO-COOH, 2,4,6,8-tetraketosebacic acid, HOOC-CH₂- COCH₂COCH₂COCH₂CO-COOH, and phthalic acid from their NMR, IR, UV, and MASS spectra, and elementary analyses. These polyketides, which are new metabolites, seem to be related to the biosynthesis of phthalic acid.     

Heterobifunctionalized tetraethylene glycol: A spacer for surface attachment of viral peptide epitopes for ELISA and derivatization of membrane modifying peptides

Summary New hydrophilic linkers of the formula Fmoc-NHCH₂CH₂COO(CH₂CH₂O)₄X (X=COCH₂CH₂COOH Fmoc-Ats (2), X=CONHCH₂COOH Fmoc-Atg (4) and X=CONHCH₂CH₂COOH Fmoc-Ata (5) have been prepared by heterobifunctional modification of tetraethylene glycol as starting material. These linkers represent a useful tool for solid phase peptide synthesis according to Fmoc/tBu strategy. Two examples are presented to illustrate the applicability of these building blocks: (i) spacing between biotin and a peptide epitope of the hepatitis C virus and evaluation in a biotin-streptavidin ELISA, and (ii) coupling of the new linker to the N- and C-terminus of the peptide antibiotic alamethicin to show eventual influences on the peptide's α-helical conformation.     

Optically active transition metal complexes. 87. Synthesis of porphyrin complexes containing chiral Fe atoms. Demonstration of Fe chirality by H NMR spectroscopy

After transformation of the vinyl groups in hemin into H, CH₂CH₃ and COCH₃, the propionic acid side chains were converted into esters and amides using (-)-menthol, (-)-2-methylbutanol and (-)-1-phenylethylamine. By introducing the CS ligand into the apical position, square pyramidal complexes were obtained, differing only in the Fe configuration, which could not be separated. However, the two diastereomers with different Fe configuration, having optically active 1-phenylethylisonitrile and pyridine (or 4-methylpyridine) as ligands in the axial positions, at −20°C exhibit different chemical shifts demonstrating configurational stability at the Fe atom on the ¹H NMR time scale. At room temperature epimerization at the Fe atom occurs by ligand exchange reactions.     

Optically active transition metal complexes. 87. Synthesis of porphyrin complexes containing chiral Fe atoms. Demonstration of Fe chirality by 1H NMR spectroscopy

After transformation of the vinyl groups in hemin into H, CH₂CH₃ and COCH₃, the propionic acid side chains were converted into esters and amides using (-)-menthol, (-)-2-methylbutanol and (-)-1-phenylethylamine. By introducing the CS ligand into the apical position, square pyramidal complexes were obtained, differing only in the Fe configuration, which could not be separated. However, the two diastereomers with different Fe configuration, having optically active 1-phenylethylisonitrile and pyridine (or 4-methylpyridine) as ligands in the axial positions, at ?20°C exhibit different chemical shifts demonstrating configurational stability at the Fe atom on the ¹H NMR time scale. At room temperature epimerization at the Fe atom occurs by ligand exchange reactions.     

Synthesis of 2-methyl-5-amino-4-oxo-3-sulfonyl esters as precursors of pseudodipeptides

The synthesis of 2-methyl-5-amino-4-oxo-3-sulfonyl esters, potentialprecursors of Xaa[COCH₂]Ala, Xaa[E-CH=CH]Ala andXaa[CH₂CH₂]Ala pseudodipeptides, has been investigated byalkylation of aminoacid-derived -ketosulfones with ethyl 2-bromo- or2-triflyloxypropionate in different basic conditions. Yields in 2-methyl-5-amino-4-oxo-3-sulfonyl esters are low but starting -ketosulfones are recovered in good yield.     

Synthetic, EPR spectroscopic, magnetic and X-ray crystallographic structural studies on copper(II) complexes of the tridentate N2S donor ligand formed from 6-methyl-2-formylpyridine and S-methyldithiocarbazate (Hmpsme)

New copper(II) complexes of general empirical formula, Cu(mpsme)X · xCH₃COCH₃ (mpsme = anionic form of the 6-methyl-2-formylpyridine Schiff base of S-methyldithiocarbazate; X = Cl, N₃, NCS, NO₃; x = 0, 0.5) have been synthesized and characterized by IR, electronic, EPR and susceptibility measurements. Room temperature μ_eff values for the complexes are in the range 1.75-2.1 μ_B typical of uncoupled or weakly coupled Cu(II) centres. The EPR spectra of the [Cu(mpsme)X] (X = Cl, N₃, NO₃, NCS) complexes reveal a tetragonally distorted coordination sphere around the mononuclear Cu(II) centre. We have exploited second derivative EPR spectra in conjunction with Fourier filtering (sine bell and Hamming functions) to extract all of the nitrogen hyperfine coupling matrices. While the X-ray crystallography of [Cu(mpsme)NCS] reveals a linear polymer in which the thiocyanate anion bridges the two copper(II) ions, the EPR spectra in solution are typical of a magnetically isolated monomeric Cu(II) centres indicating dissociation of the polymeric chain in solution. The structures of the free ligand, Hmpsme and the {[Cu(mpsme)NO₃] · 0.5CH₃COCH₃}₂ and [Cu(mpsme)NCS]_n complexes have been determined by X-ray diffraction. The {[Cu(mpsme)NO₃] 0.5CH₃COCH₃}₂ complex is a centrosymmetric dimer in which each copper atom adopts a five-coordinate distorted square-pyramidal geometry with an N₂OS₂ coordination environment, the Schiff base coordinating as a uninegatively charged tridentate ligand chelating through the pyridine and azomethine nitrogen atoms and the thiolate, an oxygen atom of a unidentate nitrato ligand and a bridging sulfur atom from the second ligand completing the coordination sphere. The [Cu(mpsme)(NCS)]_n complex has a novel staircase-like one dimensional polymeric structure in which the NCS⁻ ligands bridge two adjacent copper(II) ions asymmetrically in an end-to-end fashion providing its nitrogen atom to one copper and the sulfur atom to the other.     

Complexes of binucleating ligands. XVII. Some 3-atom N,C bridged palladium(II) complexes

The acetate-bridged complex, LPd₂(CH₃CO₂), in which L^3? is a binucleating ligand, reacts with 2-vinylpyridine in the presence of methanol or ethanol to generate the 3 atom N,C bridged complexes LPd₂(2-C₅H₄N·CH·CH₂OR) (R = Me or Et) whose ¹H and ¹³C nmr spectra indicate the presence in solution of two slowly interconverting forms at room temperature. The ¹H and ¹³C nmr spectra of two closely related pairs of 3 atom N,C bridged complexes of the form LPd₂(2-C₅H₄N·CH·X) and LPd₂ (HN = C(CH₃)·CH·X) (where X = COCH₃ or COOCH₃) show that the complexes with pyridine-containing bridges exist in solution at room temperature in two distinguishable forms whilst the corresponding imine-bridged complexes behave as single species. The existence of two forms of the complexes with pyridine-containing 3 atom N,C bridges, the natures of which are discussed in this paper, appears to be a consequence of steric interaction between the pyridine α hydrogen atom and the closely adjacent oxygen donor of L.     

Natural bond orbital approach to the transmission of substituent effect through the fulvene and benzene ring systems

Electronic structure of 22 monosubstituted derivatives of benzene and exocyclically substituted fulvene with substituents: B(OH)₂, BH₂, CCH, CF₃, CH₃, CHCH₂, CHO, Cl, CMe₃, CN, COCH₃, CONH₂, COOH, F, NH₂, NMe₂, NO, NO₂, OCH₃, OH, SiH₃, SiMe₃ were studied theoretically by means of Natural Bond Orbital analysis. It is shown, that sum of π-electron population of carbon atoms of the fulvene and benzene rings, pEDA(F) and pEDA(B), respectively correlate well with Hammett substituent constants s_p⁺ \sigma_{\rm{p}}^{+} and aromaticity index NICS. The substituent effect acting on pi-electron occupation at carbon atoms of the fulvene ring is significantly stronger than in the case of benzene. Electron occupations of ring carbon atoms (except C1) in fulvene plotted against each other give linear regressions with high correlation coefficients. The same is true for ortho- and para-carbon atoms in benzene. Positive slopes of the regressions indicate similar for fulvene and benzene kind of substituent effect – mostly resonance in nature. Only the regressions of occupation at the carbon atom in meta- position of benzene against ortho- and para-positions gives negative slopes and low correlation coefficients.     

Irreversible Inhibition of Transglutaminases by Sulfonium Methylketones: Optimization of Specificity and Potency with w-Aminoacyl Spacers

Abstract

Sulfonium methylketones, of structure Cbz-Phe-NH(CH₂)_nCOCH₂S ⁺ (CH₃)₂, n < 2, are specific and potent inactivators of transglutaminases. The length of the -(CH₂)_n-spacer moiety, n = 1-5, is a critical determinant for both the specificity and potency of the inactivator. The dipeptidyl analog Cbz-Phe-Gly-(CH₂)_nS ⁺ (CH₃)₂, n = 1, is a more powerful inactivator of the thiol proteinase cathepsin B, k/K < 3 × 10⁵ M^?1 min^?1, than of transglutaminases, k_i(appl/K_i(appl < 1.5 × 10⁴ M^?1 min^?1. In contrast, the γ-aminobutyryl analog, n = 3, is a very potent transglutaminase inactivator with k_i(apP/ K_i(appl = 3.1 < 10⁶M^?1min^?1, but does not inactivate cathepsin B. In cell studies, the y-aminobutyryl and w-aminohexyl analogs inhibited the transglutaminase-mediated process of ionophore-induced cross-linked envelope formation by human malignant keratinocytes and the order of potency was related to that found for enzyme inhibition. The sulfonium methylketones, in equilibrium with the resonance stabilized ylides, are chemically inert towards glutathione under ambient conditions demonstrating the potential utility of this novel class of transglutaminase inhibitors for the study of enzyme inhibition in cellular environments.     

Metal ion size selectivity in ligands with groups containing the neutral oxygen donor atom. A crystallographic and thermodynamic study

The coordinating properties of open-chain ligands containing alcoholic or ethereal oxygen donors are examined. Addition of oxygen donors usually leads to complex stabilisation for large metal ions (Pb²⁺, Cd²⁺) and to less favourable effects on complex stability for small metal ions (Cu²⁺, Ni²⁺). The formation constants of these metal ions with the set of ligands RN(CH₂CHOH·CH₃)₂ where R is ---H, ---CH₂CHOH·CH₃, ---CH₂CH₂OCH₃, ---CH₂CH₂OCH₂CH₂OH, and ---CH₂---CHOCH₂CH₂CH₂ are reported. The largest stabilisation for each case where R is an O-donor group relative to R = H occurs for Pb²⁺, the largest metal ion, while Cu²⁺, the smallest metal ion, shows the smallest stabilisation. The crystal structure of [Ni(HOCH₂CH₂NHCH₂CH₂NH₂)₂] (NO₃)₂ is reported. The space group is P , with cell constants a = 13.098(3), b = 8.737(4), and c = 7.746(3) Å, β = 112.66(3), β = 90.65(3), and γ = 85.03(2), and Z = 2. Disorder of the nitrate anions hindered refinement, with the result that a final conventional R factor of 0.0903 was achieved. The Ni---N bond lengths average 2.06(1) (secondary nitrogen) and 2.10(2) (primary nitrogen). The Ni---O bond lengths are rather long, averaging 2.15(1) Å, which is used to support the idea that the steric effects are responsible for destabilising the complexes of small metal ions such as Ni(11) when neutral oxygen donors are present.     

Synthesis of 5,6-dihydro-4H-1,3-oxazines from neutral and cationic platinum(II) nitrile complexes. X-ray structure of trans-[Pt(CF3){ H2CH2}(PPh3)2]BF4

The 1,3-oxazine complexes cis- and trans-[PtCl₂{ C(R)OCH₂CH₂C}H₂₂] (cis: R=CH₃ (1a), CH₂CH₃ (2a), (CH3)₃C (3a), C₆H₅ (4a); trans:R =CH₃ (1b), C₆H₅ (4b)) were obtained in 51-71% yield by reaction in THF at 0 °C of the corresponding nitrile complexes cis- and trans-[PtCl2(NCR)₂] with 2 equiv. of ⁻OCH₂CH₂CH₂Cl, generated by deprotonation of 3-chloro-1-propanol with n-BuLi. The cationic nitrile complexes trans-[Pt(CF₃)(NCR)(PPh₃)₂]BF₄ (R=CH3, C₆H₅) react with 1 equiv, of ⁻ OCH2CH2CH2Cl to give a mixture of products, including the corresponding oxazine derivatives trans-[Pt(CF₃){ CH₂}(PPh₃)₂]BF₄ (5 and 6), the chloro complex _trans- [Pt(CF₃)Cl(PPh₃)₂] and free oxazine H2. For short reaction times (c. 5–15 min) the oxazine complexes 5 and 6 could be isolated in modest yield (37–49%) from the reaction mixtures and they could be separated from the corresponding chloro complex (yield 40%) by taking advantage of the higher solubility of the latter derivative in benzene. For longer reaction times (> 2 h), trans-[Pt(CF₃)Cl(PPh₃)₂] was the only isolated product. Complex 6 was crystallographically characterized and it was found to contain also crystals of trans- [PtCl{ H₂}(PPh₃)₂]BF₄, which prevented a more detailed analysis of the bond lengths and angles within the metal coordination sphere. The 1,3-oxazine ring, which shows an overall planar arrangement, is characterized by high thermal values of the carbon atoms of the methylene groups indicative of disordering in this part of the molecule in agreement with fast dynamic ring processes suggested on the basis of ¹H NMR spectra. It crystallizes in the trigonal space group P , with a=22.590(4), b=15.970(3) Å, γ=120°, V=7058(1) ų and Z=6. The structure was refined to R=0.059 for 3903 unique observed (I3σ(I)) reflections. A mechanism is proposed for the conversion of nitrile ligands to oxazines in Pt(II) complexes.     

Changes of aliphatic C–H bonds in cyanobacteria during experimental thermal maturation in the presence or absence of silica as evaluated by FTIR microspectroscopy

Aliphatic C–H bonds are one of the major organic signatures detected in Proterozoic organic microfossils, and their origin is a topic of interest. To investigate the influence of the presence of silica on the thermal alteration of aliphatic C–H bonds in prokaryotic cells during diagenesis, cyanobacteria Synechocystis sp. PCC6803 were heated at temperatures of 250–450°C. Changes in the infrared (IR) signals were monitored by micro‐Fourier transform infrared (FTIR) spectroscopy. Micro‐FTIR shows that absorbances at 2,925 cm^?1 band (aliphatic CH₂) and 2,960 cm^?1 band (aliphatic CH₃) decrease during heating, indicating loss of the C–H bonds, which was delayed by the presence of silica. A theoretical approach using solid‐state kinetics indicates that the most probable process for the aliphatic C–H decrease is three‐dimensional diffusion of alteration products under both non‐embedded and silica‐embedded conditions. The extrapolation of the experimental results obtained at 250–450°C to lower temperatures implies that the rate constant for CH₃ (k_CH3) is similar to or lower than that for CH₂ (k_CH2; i.e., CH₃ decreases at a similar rate or more slowly than CH₂). The peak height ratio of 2,960 cm^?1 band (CH₃)/2,925 cm^?1 band (CH₂; R_3/2 values) either increased or remained constant during the heating. These results reveal that the presence of silica does affect the decreasing rate of the aliphatic C–H bonds in cyanobacteria during thermal maturation, but that it does not significantly decrease the R_3/2 values. Meanwhile, studies of microfossils suggest that the R_3/2 values of Proterozoic prokaryotic fossils from the Bitter Springs Group and Gunflint Formation have decreased during fossilization, which is inconsistent with the prediction from our experimental results that R_3/2 values did not decrease after silicification. Some process other than thermal degradation, possibly preservation of specific classes of biomolecules with low R_3/2 values, might have occurred during fossilization.     

Dedication

Mixed cultures derived from Boston Harbor sediments, which gave evidence of methylating tin compounds, yielded two isolates, each a Bacillus sp., which methylated CH₃SnCl₃ to form (CH₃)₃SnX in coculture. Neither organism alone gave evidence of methylation. SnCl₄ and (CH₃)₂SnCl₂ were not methylated. Transfer of either organism to filtered medium containing CH₃SnCl₃ in which the other had grown did not lead to methylation. Therefore methylation by the coculture is not simply a matter of cross‐feeding.