Navigation of Chemotactic Cells by Parallel Signaling to Pseudopod Persistence and Orientation

The mechanism of chemotaxis is one of the most interesting issues in modern cell biology. Recent work shows that shallow chemoattractant gradients do not induce the generation of pseudopods, as has been predicted in many models. This poses the question of how else cells can steer towards chemoattractants. Here we use a new computational algorithm to analyze the extension of pseudopods by Dictyostelium cells. We show that a shallow gradient of cAMP induces a small bias in the direction of pseudopod extension, without significantly affecting parameters such as pseudopod frequency or size. Persistent movement, caused by alternating left/right splitting of existing pseudopodia, amplifies the effects of this bias by up to 5-fold. Known players in chemotactic pathways play contrasting parts in this mechanism; PLA2 and cGMP signal to the cytoskeleton to regulate the splitting process, while PI 3-kinase and soluble guanylyl cyclase mediate the directional bias. The coordinated regulation of pseudopod generation, orientation and persistence by multiple signaling pathways allows eukaryotic cells to detect extremely shallow gradients.     

Flagellated coryneform bacteria from the intestine of earthworms

Summary Representative strains of distinctly flagellated, but doubtfully motile, coryneform bacteria were isolated from the intestine of Indian earthworms. Their morphological, cultural, physiological and nutritional characters are described, and their taxonomic position discussed.     

Toluene-Degrading Bacteria Are Chemotactic towards the Environmental Pollutants Benzene, Toluene, and Trichloroethylene

The bioremediation of polluted groundwater and toxic waste sites requires that bacteria come into close physical contact with pollutants. This can be accomplished by chemotaxis. Five motile strains of bacteria that use five different pathways to degrade toluene were tested for their ability to detect and swim towards this pollutant. Three of the five strains (Pseudomonas putida F1, Ralstonia pickettii PKO1, and Burkholderia cepacia G4) were attracted to toluene. In each case, the response was dependent on induction by growth with toluene. Pseudomonas mendocina KR1 and P. putida PaW15 did not show a convincing response. The chemotactic responses of P. putida F1 to a variety of toxic aromatic hydrocarbons and chlorinated aliphatic compounds were examined. Compounds that are growth substrates for P. putida F1, including benzene and ethylbenzene, were chemoattractants. P. putida F1 was also attracted to trichloroethylene (TCE), which is not a growth substrate but is dechlorinated and detoxified by P. putida F1. Mutant strains of P. putida F1 that do not oxidize toluene were attracted to toluene, indicating that toluene itself and not a metabolite was the compound detected. The two-component response regulator pair TodS and TodT, which control expression of the toluene degradation genes in P. putida F1, were required for the response. This demonstration that soil bacteria can sense and swim towards the toxic compounds toluene, benzene, TCE, and related chemicals suggests that the introduction of chemotactic bacteria into selected polluted sites may accelerate bioremediation processes.     

Chemotactic Behavior of Nematodes

Nematode chemoreception is reviewed Methods that have been used to measure chemotaxis are discussed and a new method using a video camera interfaced to a microcomputer is briefly described. The chemical stimuli that have been identified are discussed. The transition from attractant to repellent as NaCl increases in concentration is demonstrated by new data.     

Chemotactic behavior of myoblasts

Earlier studies have suggested that myogenic cells of somite origin migrate into the developing limb, but little is known about the factors affecting the pattern of migration. In order to understand the migratory behavior of myogenic cells, embryonic skeletal muscle cells were tested for their ability to migrate chemotactically using a modified Boyden chamber assay system. It is shown here, for the first time, that embryonic skeletal muscle cells have the capacity to migrate toward a gradient of platelet-derived growth factor (PDGF) and PDGF-like factors present in serum and chick embryo extract (CEE). On the other hand, nonmyogenic limb mesenchyme cells do not exhibit such a response. A hypothesis is proposed here that chemotactic factors from the already patterned vasculature might influence the distribution of skeletal muscle cells during early limb development.     

Chemotactic behavior of spiroplasmas

The behavior of spiroplasmas in diffusion-generated concentration gradients of attractants and repellents was examined microscopically. Motility was strongly biased in a direction parallel to attractant gradients, and examination of individual cells showed that the characteristic flexing of the cell body took place less frequently under these conditions, suggesting that flexing is associated with changes in the direction of swimming.     

Chemotactic Behavior of Azotobacter vinelandii

Chemotaxis was exhibited by Azotobacter vinelandii motile cells. Exposure of cells to sudden increases in attractant concentration suppressed the frequency of tumbling and resulted in smooth swimming. Cells responded chemotactically to a chemical gradient produced during metabolism. Motility occurred over a temperature range of 25 to 37°C with an optimum pH range of between pH 7.0 and 8.0. The average speed of motile cells was determined to be 74 μm/s or 37 body lengths per s. The speed of cells appeared to increase as a function of attractant concentration. Chemotactic systems for fructose, glucose, xylitol, and mannitol were inducible. A. vinelandii exhibited chemotaxis for a number of compounds, including hexoses, hexitols, pentitols, pentoses, disaccharides, and amino sugars. We conclude from these studies that A. vinelandii exhibits a temporal chemotactic sensing system.     

Mechanism for Collective Cell Alignment in Myxococcus xanthus Bacteria

Myxococcus xanthus cells self-organize into aligned groups, clusters, at various stages of their lifecycle. Formation of these clusters is crucial for the complex dynamic multi-cellular behavior of these bacteria. However, the mechanism underlying the cell alignment and clustering is not fully understood. Motivated by studies of clustering in self-propelled rods, we hypothesized that M. xanthus cells can align and form clusters through pure mechanical interactions among cells and between cells and substrate. We test this hypothesis using an agent-based simulation framework in which each agent is based on the biophysical model of an individual M. xanthus cell. We show that model agents, under realistic cell flexibility values, can align and form cell clusters but only when periodic reversals of cell directions are suppressed. However, by extending our model to introduce the observed ability of cells to deposit and follow slime trails, we show that effective trail-following leads to clusters in reversing cells. Furthermore, we conclude that mechanical cell alignment combined with slime-trail-following is sufficient to explain the distinct clustering behaviors observed for wild-type and non-reversing M. xanthus mutants in recent experiments. Our results are robust to variation in model parameters, match the experimentally observed trends and can be applied to understand surface motility patterns of other bacterial species.     

The Mechanism of Yield Increasing Bacteria and Plant Ecological Engineering

Yield-Increasing-Bacteria (YIB) increased crop yields by two ways: 1) Ecological effect. The YIB produced the effect for rapid reproduction and resistance to extreme environmental conditions and the function of regulating the microflora on plant surfaces(including rhizosphere and phyllosphere).The improved microflora promoted plant growth and inhibited the plant pathogens and deleterioui rhizobzcteria(DRB.II) physiological effect.YIB produced growth rogulating substances,such as gibberellin and zeatin which increased the growth and yield of crops Based on related research in the past 20 years and current expleration of YIB,the concept of Plant Ecological Engineering was elucidated,i.e.changing the microflora artificially in and on plants so as to promote the exprossion of fine characteristies of plants and the prduction potantial, restraning the activity of plant pathogens and DRB,thus making the crop healthy.     

Chemotactic response of monocytes to thrombin

Human alpha-thrombin, the procoagulant activation product of prothrombin, elicits chemotaxis in human peripheral blood monocytes and several macrophagelike continuous cell lines, most notably J-774.2, but not in human peripheral blood granulocytes. alpha-Thrombin is effective in stimulating cell movement at concentrations ranging from 10(-10) to 10(-6) M but is optimally active at 10(-8) M. At the latter concentration, the degree of response is equivalent, on a molar basis, to that observed with the peptide formylmethionylleucylphenylalanine, (FMP). In contrast to thrombin, prothrombin produces a minimal chemotactic response in monocytes and J-774.2. Blockade of alpha- thrombin's active center with diisopropylfluorophosphate (DIP-F) or tryptic proteolysis of the procoagulant exosite (i.e., gamma-thrombin) fails to alter chemotactic activity. On the other hand, addition of equimolar amounts of antithrombin III (AT3) to alpha-thrombin reduces thrombin-mediated chemotaxis by 60%, and increased ratios of AT3 to enzyme completely suppress chemotaxis. We conclude that thrombin is a potent monocyte chemotaxin and that the domains in thrombin involved in stimulating cell movement are distinct from the catalytic site and the fibrin recognition exosite. These chemotactic domains appear to be sequestered in prothrombin and in the thrombin-AT3 complex and, as such, are unavailable to the chemotactic receptor on the monocyte cell membrane.     

Chemotactic responses of Chlamydomonas reinhardtii.

A capillary chemotaxis assay revealed that among a wide range of inorganic and organic chemicals, only ammonium ion (NH4+) could serve as an attractant of Chlamydomonas reinhardtii. NH4+ (10(-2) M) gave the maximum response, with up to a 15-fold increase in accumulated algae being measured. No repellents for the chlorophyte were detected. The response to NH4+ was influenced by exogenous levels of calcium, but not by L-methionine. The optimal pH for positive chemotaxis was 7.0; however, attraction was measurable from pH 4.0 to 9.0. Positive chemotaxis was stimulated by performing the assay under fluorescent illumination rather than in the dark.     

Chemotactic response of a gliding mycoplasma

Mycoplasma sp. nov. strain 163K, the gliding microorganism isolated from the gills of a tench (Tinca tinca L.), is capable of chemotaxis, being attracted to sugars, amino acids, and mucus. The chemotactic behavior of the organisms was microscopically investigated and documented by long-time exposure photomicrographs providing motility tracks. In diffusion-generated concentration gradients of chemoattractive substances, the random motion of the mycoplasmas was strongly biased in the direction of increasing attractant concentrations.