中国葡萄属植物野生种多样性分析

中国是葡萄属植物的主要起源地之一,也是世界葡萄属植物种类最多、遗传资源最丰富的国家之一,起源于中国的葡萄属植物共有40种、1亚种、13变种。本研究根据《葡萄种质资源描述规范和数据标准》,选择多项性状指标作为形态鉴定参数,对起源于中国的葡萄属植物23个种的生物学性状、植物学特征、农艺性状等进行鉴定,分析其遗传多样性特点。结果表明,中国葡萄属植物的主要物候期,嫩梢新梢的绒毛、颜色,叶片的形状、颜色、锯齿,果实大小、颜色、香型和花器官等形态性状都有丰富的变化,表现出丰富的多样性。上述研究结果将为葡萄属植物的分类鉴定提供依据,也将为葡萄属植物演化研究和育种利用提供参考。根据本研究结果,建议对目前使用的《葡萄种质资源描述规范和数据标准》作进一步修订和完善,以适应我国野生葡萄资源多样性评价研究。     

生长型分类方案不同导致森林生态系统植物功能性状的统计偏差

将植物划分为不同的生长型来统计植物功能性状特征,是当前植物性状研究中常用的方法;但生长型分类方案的不同很可能造成植物功能性状统计分析的偏差,对此偏差的评估却尚未见报道。根据植物志描述及野外调查实际情况,将生长型划分为3种不同的分类方案：分类1：根据植物志信息划分为传统意义的乔木和灌木;分类2：根据树高和胸径划分乔木、小乔木和灌木;分类3：仅根据树高划分乔木层与灌木层的乔木和灌木。以东部亚热带常绿阔叶林区域的浙江金华北山35种优势阔叶木本植物的枝叶性状为研究对象,比较不同生长型分类对植物枝叶性状统计数据的影响。结果表明：（1）与传统的分类1相比,分类2对乔木植物枝叶性状影响的显著程度要高于分类3,而对灌木植物枝叶性状的影响程度低于分类3;但不同生长型分类方案中乔木和灌木的枝叶性状总体差异不显著。而与分类2小乔木相比,分类1以及分类2内部的乔木和灌木生长型的性状与分类2小乔木差异非常明显;（2）将不同生长型植物再划分为不同生活型后,不同生长型分类方案对性状统计的影响增大。无论是常绿还是落叶生活型的小乔木,其与不同生活型乔木和灌木的性状差异仍然显著。可见,不同的生长型分类方案可造成植物功能性状统计的差异;把小乔木植物这一功能类群划分出来,能更好地反映森林生态系统性状特征的差异性。     

国产泽泻属的数量分类研究──兼论世界泽泻属种间的表征关系

基于形态学、解剖学、花粉形态和地理分布等证据,应用聚类分析、排序以及空间自相关分析等方法,探讨国产泽泻属４种植物以及世界泽泻属９种植物的表征关系。在此基础上选择和和评价了相对重要的分类性状。     

Q型聚类分析在东北水生植物香蒲属分类研究中的应用

香蒲属（Typha）植物是我国东北水生植物中的重要类群,作者首次利用数值分类学中的Q型聚类分析方法对东北产香蒲属七种植物进行分析,可望为科学地研究该类群提供依据,同时也对传统分类进行评价。l材料与方法以香蒲属这7个种（表1）作为分类运算单位（OperahonaltaxonoAnc。L简称OTU）,主要观察和测量了7种植物的营养体、花序、花期及花粉等性状,首先对其性状数据化,并对该原始数据进行标准差标准化处理,共筛选出50个性状的原始数据（表对,对其进行数量分类。特征记录主要靠观察和测量植物标本、腊叶标本及花粉形态数据等,其性…     

应用群分析研究薯蓣的分类

本文是应用群分析研究薯蓣属根状茎组中国分类群分类的一次尝试。分类特征取用了形态学、细胞学、花粉形态和生物化学等多方面的性状进行综合分析;方法和手段上使用了距离系数、相关系数等各种群分析运算方法,并且以综合系数进行评价。不仅取得了与传统分类基本一致的分类结果,为该组植物的系统分类提供富有启发性的参考,同时也为高等植物数量分类研究找到一种最优分类方法一相关系数UPGMA法。     

囊状嵩草(莎草科)及相关类群的分类

根据外部形态学和小坚果表皮的微形态学资料,研究了囊状嵩草及其相关类群的分类。在这一 群植物中,有13个相关的学名。根据以前学者用于区别这些植物的形态性状,无法清楚地将它们划分 开。因此作者深入地研究了有关植物的89号200多份标本,重新评价了形态性状的分类学意义。为了 更深入地理解这类植物的分类,应用扫描电子显微镜对其小坚果表皮的微形态进行了研究。根据研究 的结果,确认了囊状嵩草Kobresia fragilis和弧形嵩草K．curvata,其他名称做为囊状嵩草的异名,K．clar- keana、K．clarkeana var．megalantha和K.curticeps var．gyirongensis被处理为囊状嵩草的新异名。弧形嵩 草从形态学和微形态学两个方面都明显不同于囊状嵩草。研究中还发现囊状嵩草的一号标本采自甘肃的碌曲,是其分布的省级新记录。     

应用群分析研究薯蓣的分类

本文是应用群分析研究薯蓣属根状茎组中国分类群分类的一次尝试。分类特征取用了形态学、细胞学、花粉形态和生物化学等多方面的性状进行综合分析;方法和手段上使用了距离系数、相关系数等各种群分析运算方法,并且以综合系数进行评价。不仅取得了与传统分类基本一致的分类结果,为该组植物的系统分类提供富有启发性的参考,同时也为高等植物数量分类研究找到一种最优分类方法—相关系数UPGMA法。     

吸引人的葡萄科

葡萄科植物有12属约700种,中国有7属100多种。本科的分类和应用都吸引人。 葡萄的知识面 葡萄(Vitis vinifera)是大家习知的檀物,但主要是由于它的果实为著名水果,而对于它的植物形态能认识深入些的却并不多(对一般人而言)。有的人知道是藤本植物,搭架栽培的,结葡萄串……。如果问葡萄的花怎样,怕是说不清了。从植物分类上说认识葡萄最好先弄清葡萄属的特征。对此,还应与接近的属——     

基于核基因分子多态性的葡萄属物种鉴定

葡萄属(Vitis)植物主要分布于东亚、北美洲以及欧洲至中亚地区。由于葡萄主要采用无性繁殖方式,地区间品种交流较多,同名异物及同物异名现象较为普遍,给葡萄属物种的分类、鉴定造成一定困难。本研究通过序列同源性比对的方法对葡萄属4种植物基因组的保守编码区进行比对,挖掘保守序列93条,经过验证,找到了一条可用于开发多态性分子标记的KOG3174同源序列,并根据该序列设计得到3对引物,可用于4种葡萄的分类、鉴定。     

中国黄杨属植物数量分类的研究

本文采用系统聚类分析方法对中国黄杨属植物20种、3亚种和2变种进行了分类学研究,研究结果表明：营养器官的32个特征性状、繁殖器官的35个特征性状和总的67个特征性状的系统聚类结果与该属植物形态分类结果相吻合,从而为该属植物新分类群的建立,种、亚种和变种的鉴定以及某些划分不合理的种群纠正提供了一种新的科学依据和手段。     

Improvement of an RNA purification method for grapevine (Vitis vinifera L.) suitable for cDNA library construction

A method is described, which consistently yields high quality total RNA from grapevine. Dissolving of crude RNA pellets in borate-containing buffer, instead of normally used water before a selective lithium chloride precipitation, was found to be a critical step, leading to a 2.5-fold increase of yield. The resulting RNA preparations were suitable for standard downstream applications and also for cDNA library construction. The method worked efficiently and reproducibly and could easily be scaled from milligram to gram quantities of plant material grown in hydroponic culture, sandy soil or Perlite. It was applied to different kinds of grapevine tissues (leaves, stem) and, after additional adaptation of the protocol, to roots.     

Restriction fragment length polymorphism and molecular taxonomy in Vitis vinifera L.

Forty-six accessions of grapevine (V. vinifera L.) were compared by restriction fragment length polmorphism (RFLP) analysis, and 111 informative or unique restriction fragments were found that revealed an important level of polymorphism. RFLP patterns were compared in two ways: by calculating electrophoretic similarity degree values further analyzed by principal component analysis and by studying the distribution of rare restriction fragments. Six taxonomic groups could be defined, which partially confirmed relationships derived from ampelographical data. Our data support the existence of ecogeographical groups.     

Evolution and history of grapevine (Vitis vinifera) under domestication: new morphometric perspectives to understand seed domestication syndrome and reveal origins of ancient European cultivars

Background and Aims

In spite of the abundance of archaeological, bio-archaeological, historical and genetic data, the origins, historical biogeography, identity of ancient grapevine cultivars and mechanisms of domestication are still largely unknown. Here, analysis of variation in seed morphology aims to provide accurate criteria for the discrimination between wild grapes and modern cultivars and to understand changes in functional traits in relation to the domestication process. This approach is also used to quantify the phenotypic diversity in the wild and cultivated compartments and to provide a starting point for comparing well-preserved archaeological material, in order to elucidate the history of grapevine varieties.

Methods

Geometrical analysis (elliptic Fourier transform method) was applied to grapevine seed outlines from modern wild individuals, cultivars and well-preserved archaeological material from southern France, dating back to the first to second centuries.

Key Results and Conclusions

Significant relationships between seed shape and taxonomic status, geographical origin (country or region) of accessions and parentage of varieties are highlighted, as previously noted based on genetic approaches. The combination of the analysis of modern reference material and well-preserved archaeological seeds provides original data about the history of ancient cultivated forms, some of them morphologically close to the current ‘Clairette’ and ‘Mondeuse blanche’ cultivars. Archaeobiological records seem to confirm the complexity of human contact, exchanges and migrations which spread grapevine cultivation in Europe and in Mediterranean areas, and argue in favour of the existence of local domestication in the Languedoc (southern France) region during Antiquity.     

Depiction of Grapevine Phenology by Gene Expression Information and a Test of its Workability in Guiding Fertilization

The development of precision agriculture calls for the emergence of new approaches to more accurately depict plant phenology. Gene expression data can predict and indicate plant growth state and phenological events accurately at the molecular level, and thus could be developed as a novel means of describing crop phenophase. Here, we analyzed the expression profiles of nine genes involved in grapevine flower and berry development, and screened the most informative genes for use in depicting grapevine phenology. Of the genes tested, VvAP1, VvAP3, VvFLC were found to be best suited to depicting grapevine phenology. The feasibility and efficiency of using the genetically depicted grapevine phenology was further tested in fertilization trials. The results showed that fertilization could be used to decrease flower and berry drop ratio and increase berry weight and size to a greater extent when taking into account variations in the activity of specific genes. Thus, phenologies predicted by a knowledge of gene activity can definitely be formed, and can be regarded as “genetic phenology”. A first grapevine genetic phenology profile was completed, and used to pre-depict grapevine phenophases to accurately guide the timing of grapevine farming activities and in the pre-diagnosis of the influence of some stresses on grapevines. Genetic phenology could be developed into a simple, low-cost and highly effective technology for accurate prediction of traditional crop phenology at the molecular level that is well suited to precision agriculture.     

A multiplex PCR assay for the simultaneous identification of three mealybug species (Hemiptera: Pseudococcidae)

Molecular species identification is becoming more wide-spread in diagnostics and ecological studies, particularly with regard to insects for which morphological identification is difficult or time-consuming. In this study, we describe the development and application of a single-step multiplex PCR for the identification of three mealybug species (Hemiptera: Pseudococcidae) associated with grapevine in South Africa: Planococcus ficus (vine mealybug), Planococcus citri (citrus mealybug) and Pseudococcus longispinus (longtailed mealybug). Mealybugs are pests on many commercial crops, including grapevine, in which they transmit viral diseases. Morphological identification of mealybug species is usually time-consuming, requires a high level of taxonomic expertise and usually only adult females can be identified. The single-step multiplex PCR developed here, based on the mitochondrial cytochrome c oxidase subunit 1 (CO I) gene, is rapid, reliable, sensitive, accurate and simple. The entire identification protocol (including DNA extraction, PCR and electrophoresis) can be completed in approximately four hours. Successful DNA extraction from laboratory and unparasitized field-collected individuals stored in absolute ethanol was 97%. Specimens from which DNA could be extracted were always correctly identified (100% accuracy). The technique developed is simple enough to be implemented in any molecular laboratory. The principles described here can be extended to any organism for which rapid, reliable identification is needed.     

On the effectiveness of higher taxonomic ranks for vegetation analysis

The ecological value of employing taxonomic categories other than species to describe vegetation is examined by comparing the results of numerical classification. Using presence data only and an unsophisticated classification method with data from a small area, it is found that the use of generic and subgeneric categories instead of species causes little loss in interpretability. At the family and subfamily levels more sophisticated analyses probably employing quantitative data, are apparently required to achieve similar levels of interpretability. The transformation between categories is shown to be a simple matrix multiplication and some alternative transformations are briefly outlined. It is suggested that the use of different taxonomic categories in a sequence of analyses beginning with the highest category would provide a useful means of planning which could reduce the overall time required for the analysis of large data sets.     

Biotin-Avidin ELISA Detection of Grapevine Fanleaf Virus in the Vector Nematode Xiphinema index

The value of biotin-avidin (B-A) ELISA for the detection of grapevine fanleaf virus (GFLV) in Xiphinema was estimated with field populations and greenhouse subpopulations. Samples consisted of increasing numbers of adults ranging from 1 to 64 in multiples of two. Tests with virus-free X. index populations reared on grapevine and fig plants as negative controls did not reveal a noticeable effect of the host plant. ELISA absorbances of virus-free X. index samples were greater than corresponding absorbances of X. pachtaicum samples. Differences occurred between two X. index field populations from GFLV-infected grapevines in Champagne and Languedoc. In most tests, 1-, 2-, 4-, and 8-nematode samples of virus-free and virus-infected populations, respectively, could not be separated. Consequently, B-A ELISA was not a reliable method for GFLV detection in samples of less than 10 X. index adults, but comparison of the absorbances obtained with increasing numbers may allow differentiation of the viral infectious potential of several populations.