The density and diversity of gymnamoebae associated with terrestrial moss communities (Bryophyta: Bryopsida) in a northeastern U.S. forest

Moss communities are commonly found in temperate forests and form a nearly continuous understory in some high latitude forests. However, little is known about the microbial component of these communities, especially the non-testate amoeboid protists. Fifty morphospecies of naked amoebae were identified in samples collected at eight sites in a northeastern North American forest. The mean number (+/-SE) of morphospecies found per sample site based on laboratory cultures was 17+/-2.1. The density of amoebae expressed as number/g dry weight of moss ranged from 3.5+/-0.04 x 10(3) to 4.3+/-0.2 x 10(4) and was positively correlated with the moss moisture content (r=0.9, P<0.001, df=26). Densities of gymnamoebae in the moss are generally higher than found in the surrounding soil, but this may be due in part to the greater weight of soil per unit volume compared with moss. The percentage of encysted forms was inversely related to the moisture content of the moss sample.     

Power analysis to determine sample size for monitoring vegetation change in salt marsh habitats

Numerous initiatives are underway throughout New England and elsewhere to quantify salt marsh vegetation change, mostly in response to habitat restoration, sea level rise, and nutrient enrichment. To detect temporal changes in vegetation at a marsh or to compare vegetation among different marshes with a degree of statistical certainty an adequate sample size is required. Based on sampling 1 m² vegetation plots from 11 New England salt marsh data sets, we conducted a power analysis to determine the minimum number of samples that were necessary to detect change between vegetation communities. Statistical power was determined for sample sizes of 5, 10, 15, and 20 vegetation plots at an alpha level of 0.05. Detection of subtle differences between vegetation data sets (e.g., comparing vegetation in the same marsh over two consecutive years) can be accomplished using a sample size of 20 plots with a reasonable probability of detecting a difference when one truly exists. With a lower sample size, and thus lower power, there is an increased probability of not detecting a difference when one exists (e.g., Type II error). However, if investigators expect to detect major changes in vegetation (e.g., such as those between an un-impacted and a highly impacted marsh) then a sample size of 5, 10, or 15 plots may be appropriate while still maintaining adequate power. Due to the relative ease of collecting vegetation data, we suggest a minimum sample size of 20 randomly located 1 m² plots when developing monitoring designs to detect vegetation community change of salt marshes. The sample size of 20 plots per New England salt marsh is appropriate regardless of marsh size or permanency (permanent or non-permanent) of the plots.     

湖南茶陵湖里沼泽种子库与地表植被的关系

研究了湖南茶陵湖里沼泽中水毛花 (Scirpus triangulatus)、疏忽蓼 (Polygonum p raetermissum) ,普通野生稻 (Oryzarufipogon)和莼菜 (Brasenia schreberi) 4种植被类型的种子库和地上植被的物种组成及两者之间的关系。 4种类型中共萌发了2 9种植物 ,种子平均密度为 5672粒· m- 2。不同植被类型的种子库的物种数和平均密度存在显著差异 ,疏忽蓼斑块的种子库中萌发 2 2种 ,平均密度是 10 0 89粒· m- 2 ;而普通野生稻斑块种子库中只有 14种 ,平均密度仅 2 50 0粒· m- 2。在地表植被中共鉴定出 18种植物。 4种植被类型中 ,其地表植被的物种数和 Shannon多样性指数均低于种子库。地表植被与种子库的物种相似性系数的范围从 0 .43 75至 0 .692 3。每种植被类型中 ,均有一些物种只在种子库中出现 ,而另有一些物种只在植被中出现。表明种子库在湿地保护和受损湿地的恢复中具有不可替代的作用。采用移植法进行湿地植被恢复时 ,应综合考虑种子库与地表植被、以及不同植被类型之间的物种组成的特点 ,以最大限度地恢复湿地植被的物种多样性     

The impact of grazing on plant communities,plant populations and soil conditions on salt marshes

Grazing an abandoned salt marsh causes retrogressive succession, since mid salt-marsh communities change into lower salt-marsh communities. Grazing and mowing are compared in detail. Both management practices enhance species diversity in an abandoned salt marsh. This can be attributed to the removal of litter. The finding that lower salt-marsh species appear more with grazing than with mowing or abandoning is not related to a higher soil salinity as compared to mowing or abandoning, but probably to locally baring of the soil by grazing animals. Only species of pioneer or unstable environments seem to have a persistent seed bank, for other species seed dispersal seems to be a limiting factor for their establishment.Nomenclature follows Heukels & van Ooststroom (1977) for species; Westhoff & den Held (1969) for syntaxa.Mrs R. Rusthoven analyzed the soil samples, Mr E. Leeuwinga drawed the figures, and Mrs J. O'Brien corrected the English text.     

Sampling for Regional Monitoring of Nematode Communities in Agricultural Soils

Regional assessment of nematode communities to monitor the condition or ecological health of agricultural soils requires sampling programs with measures of known reliability and the ability to detect differences over time. Numbers of fields sampled in a region, samples taken per field, and subsamples assayed per sample must be balanced with cost to provide the best sampling scheme. We used components of variance from statewide surveys in North Carolina (1992) and Nebraska (1993) to estimate number of (i) fields to be sampled; (ii) 20-core, composite soil samples to be obtained for each field; and (iii) subsamples to be assayed for each composite sample to detect a specified amount of change in index values within a geographic region. Variances for these three components were used to estimate the degree of reliability for five ecologically based indices (four measures of maturity and one of diversity) of nematode communities. Total variance for maturity and diversity indices, based upon communities of free-living nematodes, was greater in North Carolina than in Nebraska; the opposite was true for indices based strictly upon maturity of communities of plant-parasitic nematodes or of all nematodes in soil. Variability within samples was greater in North Carolina than in Nebraska, especially for maturity indices based only upon free-living nematodes. We identified two possible sampling strategies for a regional survey: Option 1, with two independent samples per field and a single subsample assayed per sample, which would provide a reliability ratio value ≥0.6 for most indices; and Option 2, with three independent samples per field and two subsamples assayed per sample, which would provide a reliability ratio value ≥0.7 for several indices. When cost was considered, Option 1 was the better strategy. Number of fields to be sampled within a region or state varied with the index chosen; with specific indices, however, a 10% change in mean index value could be detected with a sample of 50 to 100 fields.     

Activity and growth efficiency of heterotrophic bacteria in a salt marsh (Ria de Aveiro, Portugal)

Bacterial utilization of monomers is recognized as an important step in the biogeochemical cycling of organic matter. In this study we have compared the heterotrophic activity of bacterial communities from different micro-habitats within a salt marsh environment (Ria de Aveiro, Portugal) in order to establish spatial patterns of bacterial abundance, monomer turnover rates (Tr) and bacterial growth efficiency (BGE). Differences in bacterial abundance and activity could be found between distinct plant rhizospheres. BGE tended to be lower at Halimione portulacoides banks, when compared to Sarcocornia perennis subsp. perennis banks which, on the contrary, showed the highest bacterial densities. Experiments of amendment of natural samples with organic and inorganic supplements indicated that salt marsh bacteria are not strongly regulated by salinity but the increased availability of labile organic matter causes a significant metabolic shift towards mineralization.     

Sediments in Marsh Ponds of the Gulf Coast Chenier Plain: Effects of Structural Marsh Management and Salinity

Physical characteristics of sediments in coastal marsh ponds (flooded zones of marsh associated with little vegetation) have important ecological consequences because they determine compositions of benthic invertebrate communities, which in turn influence compositions of waterbird communities. Sediments in marsh ponds of the Gulf Coast Chenier Plain potentially are affected by (1) structural marsh management (levees, water control structures and impoundments; SMM), and (2) variation in salinity. Based on available literature concerning effects of SMM on sediments in emergent plant zones (zones of marsh occasionally flooded and associated with dense vegetation) of coastal marshes, we predicted that SMM would increase sediment carbon content and sediment hardness, and decrease oxygen penetration (O₂ depth) and the silt-clay fraction in marsh pond sediments. Assuming that freshwater marshes are more productive than are saline marshes, we also predicted that sediments of impounded freshwater marsh ponds would contain more carbon than those of impounded oligohaline and mesohaline marsh ponds, whereas C:N ratio, sediment hardness, silt-clay fraction, and O₂ depth would be similar among pond types. Accordingly, we measured sediment variables within ponds of impounded and unimpounded marshes on Rockefeller State Wildlife Refuge, near Grand Chenier, Louisiana. To test the above predictions, we compared sediment variables (1) between ponds of impounded (IM) and unimpounded mesohaline marshes (UM), and (2) among ponds of impounded freshwater (IF), oligohaline (IO), and mesohaline (IM) marshes. An a priori multivariate analysis of variance (MANOVA) contrast indicated that sediments differed between IM and UM marsh ponds. As predicted, the silt-clay fraction and O₂ depth were lower and carbon content, C:N ratio, and sediment hardness were higher in IM than in UM marsh ponds. An a priori MANOVA contrast also indicated that sediments differed among IF, IO, and IM marsh ponds. As predicted, carbon content was higher in IF marsh ponds than in ponds of other impounded marsh types. In contrast to our predictions, C:N ratio and sediment hardness were lowest and silt-clay fraction and O₂ depth were highest in IO and IM marsh ponds. Our results indicated that SMM has affected physical properties of sediments in coastal marsh ponds. Moreover, sediments in IF marsh ponds were affected more so than were those in IO and IM marsh ponds. Our results, in conjunction with those of previous studies, indicated that sediments of marsh ponds and emergent plant zones differed greatly. We predict that changes in pond sediments due to SMM will promote greater epifaunal macroinvertebrate biomass, which in turn should attract larger populations of wintering waterbirds. However, waterbirds that filter or probe soft sediments may be negatively affected by SMM because of the expected decrease in infaunal invertebrate biomass.     

Using Functional Trajectories to Track Constructed Salt Marsh Development in the Great Bay Estuary, Maine/New Hampshire, U.S.A.

A growing number of studies have assessed the functional equivalency of restored and natural salt marshes. Several of these have explored the use of functional trajectories to track the increase in restored marsh function over time; however, these studies have disagreed as to the usefulness of such models in long‐term predictions of restored marsh development. We compared indicators of four marsh functions (primary production, soil organic matter accumulation, sediment trapping, and maintenance of plant communities) in 6 restored and 11 reference (matched to restored marshes using principal components analysis) salt marshes in the Great Bay Estuary. The restored marshes were all constructed and planted on imported substrate and ranged in age from 1 to 14 years. We used marsh age in a space‐for‐time substitution to track constructed salt marsh development and explore the use of trajectories. A high degree of variability was observed among natural salt marsh sites, displaying the importance of carefully chosen reference sites. As expected, mean values for constructed site (n = 6) and reference site (n = 11) functions were significantly different. Using constructed marsh age as the independent variable and functional indicator values as dependent variables, nonlinear regression analyses produced several ecologically meaningful trajectories (r ²> 0.9), demonstrating that the use of different‐aged marshes can be a viable approach to developing functional trajectories. The trajectories illustrated that although indicators of some functions (primary production, sediment deposition, and plant species richness) may reach natural site values relatively quickly (<10 years), others (soil organic matter content) will take longer.     

北方典型沼泽湿地高低土壤水分下植物群落特征

北方沼泽湿地在水源供给、缓解水土流失、遏制草地沙化等方面具有重要作用,明确其植物群落物种组成和多样性特征对提升其生态系统服务功能具有重要意义。目前,在北方地区开展大尺度湿地植被调查的研究仍相对较少。土壤水分是驱动植物群落发展的主导环境因素之一,为了解高低土壤水分背景下湿地植物群落特征差异及关键驱动要素,对我国7个北方典型沼泽湿地的植物群落物种组成及多样性特征进行了调查,分析了植物群落物种组成及多样性特征与环境因子的关系,以及沼泽湿地植物群落内克隆植物的分布特征。研究结果发现不同沼泽湿地的植物群落物种组成和多样性差异显著,但无明显的地带性分布规律,物种分布呈现区域性。群落物种多样性受降水、温度、土壤养分等多种环境因素的共同影响。沼泽湿地高低土壤水分背景下植物群落的物种组成和多样性差异显著,低土壤水分下植物群落物种多样性指数显著高于高土壤水分下植物群落。低土壤水分下物种多样性主要受降水和总氮影响,而高土壤水分下物种多样性主要受温度和总磷的影响。高土壤水分下克隆植物物种数和盖度在沼泽湿地植物中占有较高的比例,表明克隆植物比非克隆植物更适应高土壤水分环境。研究结果表明了7个沼泽湿地植被的区域性...     

Flood tolerance and the distribution of Iva frutescens across New England salt marshes

Summary Tidal flooding is widely believed to be an important determinant of marsh plant distributions but has rarely been tested in the field. In New England the marsh elder Iva frutescens often dominates the terrestrial border of salt marshes and we examined its flood tolerance and distribution patterns. Marsh elders only occur at elevations where their roots are not subject to prolonged water table flooding. Consequently they are found on the terrestrial border of marshes and at lower elevations associated with drainage ditches and locally elevated surfaces. Marsh elders transplanted to elevations lower than they normally occur died within a year with or without neighbors and greenhouse tests revealed that I. frutescens is much less tolerant of flooded soil conditions than plants found at lower marsh elevations. We also manipulated the water table level of field plots and found that increasing or decreasing water table drainage led to enhanced and diminished I. frutescens performance, respectively. Our results demonstrate the importance of water table dynamics in generating spatial patterns in marsh plant communities and provide further evidence that supports the hypothesis that the seaward distributional limits of marsh plant populations are generally dictated by physical processes.     

优势种去除对崇明东滩盐沼湿地生态系统的影响

盐沼生态系统环境梯度明显,物种组成较简单,是研究生物多样性与生态系统功能关系的理想对象。本研究以崇明东滩盐沼湿地为研究区域,研究优势种去除对植物群落结构以及底栖动物群落的影响。结果表明:(1)去除处理仅对植物群落分株密度有极显著效应(P0.01)。去除组和对照组物种组成差异随时间增加而减小,处理效应逐渐减弱。(2)去除组底栖动物密度均低于对照组,但差异不显著。(3)盐沼植物群落特征与底栖动物群落有密切关系,植物密度、冠层高度与底栖动物密度相关性极显著。去除优势种后,植物群落分株密度升高,群落内剩余物种占比有所上升,次优势种对群落的补偿效应具有较大贡献;而底栖动物群落密度下降,其生物量和多样性指数的变化趋势与密度并不一致。上述结果表明生物多样性变化影响了盐沼湿地生态系统植物群落和底栖动物群落结构,进而可能影响物质循环和能量流动过程。     

Effect of oxygen availability and salinity on EARLY LIFE HISTORY STAGES OF SALT MARSH PLANTS. I. Different germination strategies of Spartina alterniflora and Phragmites australis (Poaceae)

Gradients in oxygen availability and salinity are among the most important environmental parameters influencing zonation in salt marsh communities. The combined effects of oxygen and salinity on the germination of two salt marsh grasses, Spartina alterniflora and Phragmites australis, were studied in growth chamber experiments. Germination of both species was initiated by emergence of the shoot and completed by root emergence. Percentage S. alterniflora germination was reduced at high salinity (40 g NaCl/L) and in decreased oxygen (5 and 2.5%). In 0% oxygen shoots emerged, but roots did not. P. australis germination was reduced at a lower salinity (25 g NaCl/L) than S. alterniflora, and inhibited at 40 g NaCl/L and in anoxia. However, a combination of hypoxia (10 and 5% O2) and moderate salinity (5 and 10 g NaCl/L) increased P. australis germination. When bare areas in the salt marsh are colonized, the different germination responses of these two species to combinations of oxygen and salt concentrations are important in establishing their initial zonation. In high salinity wetlands S. alterniflora populates the lower marsh and P. australis occupies the high marsh at the upland boundary.     

Quantifying the Components of Biocomplexity Along Ecological Perturbation Gradients

The study of ecological perturbation gradients provides a unique opportunity to investigate the utility of various biocomplexity indices. The ability of four measures of biocomplexity (quadratic entropy, taxonomic entropy, total complexity and total diversity) and their components to quantify the nature and degree of perturbation in plant communities was assessed by how closely each measure reflected the trends in biocomplexity that are expected to occur along a gradient of decreasing perturbation. The measures were applied to two landscapes, located near Sudbury, Canada and Harjavalta, Finland, perturbed by nickel–copper smelter emissions. Taxonomic entropy was determined to be the most useful of the four measures as it has a clear information-theoretical meaning, the relative contributions of classical diversity and taxonomic information can be easily isolated, and its computation is straightforward relative to the other measures. Additionally, it is relatively insensitive to community evenness, thereby rendering it less sample-size dependant and a more appropriate measure to use for comparisons between studies as well as for conservation and restoration purposes.     

DISTRIBUTION OF BLUEGREEN ALGAE IN A MISSISSIPPI GULF COAST SALT MARSH1

Edaphic bluegreen algal communities were sampled from five menotypic angiosperm zones in Grvelline Bay Marsh near Ocean Spring. Mississippi. Samples and environmental data were taken on a quarterly basis from October 1976 to June 1977 beneath the following marsh angiosperms: Distichlis spicata (L.) Green, Scirpus olneyi gray, SPartina patens (Aiton) Muhl., Sp. alterniflora Loisel., and Juncus roemerianus Scheele. Communities in all five zones were dominated by Schizothrix calcicola (Ag.) Gom. (sensu Drauet) throughout the study, while the subdominant bluegreens varied according to season. The number of individuals in all zones was greatest in the summer and lowest in the winter. An examination of the structure of the five edaphic communities indicated a single, nearly homogeneous community exists over the entire surface of the marsh shaded by a angiosperm canopy. Light intensity appears to be the major factor affecting the distribution of bluegreen algae in this salt marsh.     

Effects of a tropical cyclone on salt marsh insect communities and post-cyclone reassembly processes

Concepts regarding effects of recurrent natural disturbances and subsequent responses of communities are central to ecology and conservation biology. Tropical cyclones constitute major disturbances producing direct effects (damage, mortality) in many coastal communities worldwide. Subsequent reassembly involves changes in composition and abundance for which the underlying mechanisms (deterministic and stochastic processes) are still not clear, especially for mobile organisms. We examined tropical cyclone-induced changes in composition and reassembly of entire insect communities in 16 Louisiana coastal salt marshes before and after Hurricane Isaac in 2012 and 2013. We used the Shannon index and multivariate permutational ANOVA to study insect resistance and resilience, β diversity partitioning to evaluate the importance of species replacement, and null models to disentangle the relative roles of different assembly processes over time after the tropical cyclone. The α diversity and species composition, overall and for different trophic levels, decreased immediately after the tropical cyclone; nonetheless, both then increased rapidly and returned to pre-cyclone states within one year. Changes in species abundance, rather than species replacement, was the primary driver, accounting for most temporal dissimilarity among insect communities. Stochastic processes, which drove community composition immediately after the tropical cyclone, decreased in importance over time. Our study indicates that rapid reformation of insect communities involved sequential landscape-level dynamics. Cyclone-resistant life cycle stages apparently survived in some, perhaps random locations within the overall salt marsh landscape. Subsequently, stochastic patterns of immigration of mobile life cycle stages resulted in rapid reformation of local communities. Post-cyclone direct regeneration of salt marsh insect communities resulted from low resistance, coupled with high landscape-level resilience via re-immigration. Our study suggests that the extent of direct regeneration of local salt marsh insect communities might change with the size of larger marsh landscapes within which they are imbedded.     

Influence of salt marsh on bacterial activity in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary)

The influence of salt marsh on estuarine bacterioplankton was investigated in two estuaries with different hydrodynamic characteristics (Ria de Aveiro and Tagus Estuary). In the Ria de Aveiro, bacteria in the flood water overlying the marsh were two times more abundant and five to six times more active than in the main channel. In the Tagus Estuary, bacterial abundance was similar in flooding and channel water, but bacterial activity was up to two times higher in the main channel. The two salt marshes have distinct influences on estuarine bacterioplankton abundance and activity. In the Ria de Aveiro, salt marsh enhanced estuarine bacterial communities, increasing their size and stimulating their activity. By contrast, the salt marsh in the Tagus Estuary does not seem to increase the bacterial abundance and production in the channel water. These distinct influences may be explained by the hydrodynamic characteristics of the salt marshes, which were confirmed by the hydrodynamic model implemented for both systems.     

Microbial community composition in sediments resists perturbation by nutrient enrichment

Functional redundancy in bacterial communities is expected to allow microbial assemblages to survive perturbation by allowing continuity in function despite compositional changes in communities. Recent evidence suggests, however, that microbial communities change both composition and function as a result of disturbance. We present evidence for a third response: resistance. We examined microbial community response to perturbation caused by nutrient enrichment in salt marsh sediments using deep pyrosequencing of 16S rRNA and functional gene microarrays targeting the nirS gene. Composition of the microbial community, as demonstrated by both genes, was unaffected by significant variations in external nutrient supply in our sampling locations, despite demonstrable and diverse nutrient-induced changes in many aspects of marsh ecology. The lack of response to external forcing demonstrates a remarkable uncoupling between microbial composition and ecosystem-level biogeochemical processes and suggests that sediment microbial communities are able to resist some forms of perturbation.     

鄂尔多斯台地盐沼滩涂湿地土壤细菌群落结构及特征

依据植被分类法将鄂尔多斯高原盐沼滩涂湿地划分为肉质耐盐草甸(B)、苔草草甸(C)、禾草草甸(D)和杂类草草甸(E)等4个植被亚型,并以盐沼裸地(A)为对照样地,共计5种盐沼滩涂湿地景观类型。运用高通量测序技术分别研究其土壤细菌群落结构特征、分布情况,以及土壤盐分与土壤细菌之间的关系。结果表明:(1) 5种盐沼滩涂湿地的土壤细菌样品共12213条OTUs,属于45个门,122个纲,365个目,663个科,1375个属,2882个种。(2)变形菌门(26.19%)是盐沼滩涂湿地平均相对丰度最高的门,其次为放线菌门(17.15%),绿弯菌门(12.62%),芽单胞菌门(Gemmatimonadetes,11.23%),拟杆菌门(Bacteroidetes,9.38%),酸杆菌门(Acidobacteria,8.83%)厚壁菌门(Firmicutes,2.96%);芽单胞菌纲中的未定细菌(norank＿c＿Gemmatimonadetes)是丰度最高的属,平均丰度为5.75%。(3)鄂尔多斯盐沼滩涂湿地自西南向东北,空间位置相近的土壤细菌群落结构具有更大的相似性,随着土壤盐分变化,变形菌门相对...     

Genetic barcoding of dark‐spored myxomycetes (Amoebozoa)—Identification,evaluation and application of a sequence similarity threshold for species differentiation in NGS studies

Unicellular, eukaryotic organisms (protists) play a key role in soil food webs as major predators of microorganisms. However, due to the polyphyletic nature of protists, no single universal barcode can be established for this group, and the structure of many protistean communities remains unresolved. Plasmodial slime moulds (Myxogastria or Myxomycetes) stand out among protists by their formation of fruit bodies, which allow for a morphological species concept. By Sanger sequencing of a large collection of morphospecies, this study presents the largest database to date of dark‐spored myxomycetes and evaluate a partial 18S SSU gene marker for species annotation. We identify and discuss the use of an intraspecific sequence similarity threshold of 99.1% for species differentiation (OTU picking) in environmental PCR studies (ePCR) and estimate a hidden diversity of putative species, exceeding those of described morphospecies by 99%. When applying the identified threshold to an ePCR data set (including sequences from both NGS and cloning), we find 64 OTUs of which 21.9% had a direct match (>99.1% similarity) to the database and the remaining had on average 90.2 ± 0.8% similarity to their best match, thus thought to represent undiscovered diversity of dark‐spored myxomycetes.     

Temporal dynamics of sediment bacterial communities in monospecific stands of Juncus maritimus and Spartina maritima

In the present study, we used 16S rRNA barcoded pyrosequencing to investigate to what extent monospecific stands of different salt marsh plant species (Juncus maritimus and Spartina maritima), sampling site and temporal variation affect sediment bacterial communities. We also used a bioinformatics tool, PICRUSt, to predict metagenome gene functional content. Our results showed that bacterial community composition from monospecific stands of both plant species varied temporally, but both host plant species maintained compositionally distinct communities of bacteria. Juncus sediment was characterised by higher abundances of Alphaproteobacteria, Myxococcales, Rhodospirillales, NB1–j and Ignavibacteriales, while Spartina sediment was characterised by higher abundances of Anaerolineae, Synechococcophycidae, Desulfobacterales, SHA–20 and Rhodobacterales. The differences in composition and higher taxon abundance between the sediment bacterial communities of stands of both plant species may be expected to affect overall metabolic diversity. In line with this expectation, there were also differences in the predicted enrichment of selected metabolic pathways. In particular, bacterial communities of Juncus sediment were predicted to be enriched for pathways related to the degradation of various (xenobiotic) compounds. Bacterial communities of Spartina sediment in turn were predicted to be enriched for pathways related to the biosynthesis of various bioactive compounds. Our study highlights the differences in composition and predicted functions of sediment‐associated bacterial communities from two different salt marsh plant species. Loss of salt marsh habitat may thus be expected to both adversely affect microbial diversity and ecosystem functioning and have consequences for environmental processes such as nutrient cycling and pollutant remediation.