Consistent patterns in diatom assemblages and diversity measures across water‐depth gradients from eight Boreal lakes from north‐western Ontario (Canada)

1. Until recently, the distribution of diatom species assemblages and their attributes (e.g. species richness and evenness) in relation to water depth have been identified but not quantified, especially across several lakes in a region. Here, we examined diatom assemblages in the surface sediment across a water‐depth gradient in eight small, boreal lakes in north‐western Ontario, minimally disturbed by human activities. 2. Surface‐sediment diatom assemblages were collected within each lake along a gentle slope from near‐shore to the centre deep basin of the lake, at a resolution of ～1 m water depth. Analysis of sedimentary samples provided an integrated view of assemblages that were living in the lake over several years and enabled a high‐resolution analysis of many lakes. The study lakes ranged in water chemistry, morphology and size and are located along an east–west transect approximately 250 km long in north‐western Ontario (Canada). 3. The majority of diatom species were distributed along a continuum of depth, with those taxa having similar habitat requirements forming distinct, though overlapping, assemblages. Three major zones of diatom assemblages in each lake were consistently identified: (i) a near‐shore assemblage of Achnanthes (sensu lato), Nitzschia, Cymbella (sensu lato) and other benthic species; (ii) a mid‐depth assemblage of small Fragilaria (sensu lato)/small Aulacoseira and various Navicula taxa; and (iii) a deep‐water assemblage of planktonic origin (mainly Discotella spp.). 4. The depth of the transition between assemblage zones varied between the eight lakes. The boundary between the deep‐water planktonic zone and the mid‐depth benthic zone varied according to water chemistry and was probably related to light attenuation. The boundary was deeper in lakes with the lower dissolved organic carbon and total phosphorus (TP) (i.e. less light attenuation) and vice versa. 5. Generally, species richness, species evenness and turnover rate of species as a function of depth were significantly lower in the planktonic assemblage zone in comparison with the two zones nearer the shore. Reproducibility of species and assemblage distributions across the depth gradient of the lakes illustrated that, despite potential for sediment transport, detailed ecological characterisation of diatom species can be gleaned from sedimentary data. Such data are often lacking, particularly for near‐shore benthic species.     

Vertical distribution of benthic community responses to fish predators, and effects on algae and suspended material

The vertical positioning of benthic invertebrates should be a trade-off between the risky, but productive, sediment surface and the safer, but physiologically harsher, conditions deeper down in the sediment. This is because the foraging efficiency of benthic fish decreases with sediment depth, whereas the sediment surface is generally better oxygenated and has a higher resource quality than lower layers. We studied how two benthic fish predators, bream (Abramis brama) and ruffe (Gymnocephalus cernuus), affected the community composition and vertical distribution of benthos, and their indirect effects on algae and suspended material, in field enclosures. Whereas bream had significant effects on the density, composition and distribution of the benthos, ruffe had no such effects. The total benthos biomass in bream treatments was an-order of magnitude lower in the upper sediment layer (0–1 cm) and three times lower in the middle layer (1–3 cm) than in the controls, whereas there were no significant effects in the deepest layer (3–10 cm). Bivalves persisted in the deepest layer although their density was reduced in shallow sediment, whereas gastropods faced the risk of local extinction in the presence of bream. As indirect effects, small-bodied cladocerans, phytoplankton, periphyton and both organic and inorganic suspended material were higher in the bream treatments. We␣conclude that the impact of bream diminished substantially with increasing sediment depth, enabling invertebrates to survive in the sediment and to persist in the presence of bream. However, there were␣no␣indications of any group adjusting their vertical position behaviourally as a response to predation threat.     

Living foraminifera and total populations in salt marsh peat cores: Kelsey Marsh (Clinton, CT) and the Great Marshes (Barnstable, MA)

Common species of intertidal agglutinated benthic foraminifera in salt marshes in Massachusetts and Connecticut live predominantly at the marsh surface and in the topmost sediment (0–2.5 cm), but a considerable part of the fauna lives at depths of 2.5–15 cm. Few specimens are alive at depths of 15–25 cm, with rare individuals alive between 25–50 cm in the sediments. Specimens living between the sediment surface and 25 cm deep occur in all marsh settings, whereas specimens living deeper than 25 cm are restricted to cores from the lower and middle marsh, and have an irregular distribution-with-depth. Lower and middle marsh areas are bioturbated by metazoa, suggesting that living specimens reach these depths at least in part by bioturbation. High-marsh sediments in New England consist of very dense mats of Spartina patents or Distichlis spicata roots and are not bioturbated by metazoa. In this marsh region bioturbation by plant roots and vertical fluid motion may play a role in moving the foraminifera into the sediment. The depth-distribution of living specimens varies with species: living specimens of Trochammina inflata consistently occur at the deepest levels. This suggests that species have differential rates of survival in the sediment, possibly because of differential adaptation to severe dysoxia to anoxia, or because of differing food preferences. There is no simple correlation between depth-in-core and faunal diversity, absolute abundance, and species composition of the assemblages. It is therefore possible to derive a signal of faunal changes and thus the environmental changes that may have caused them from the complex faunal signal of fossil assemblages.     

Quantification of biogenic 3-D structures in marine sediments

Burrow and tube structures of marine infauna were quantified in sediments from cores obtained at 3 depths (75, 95 and 118 m) at 3 occasions over a 1-year period. The benthic communities at the two deeper stations were re-establishing subsequent to re-oxygenation after hypoxic conditions; the shallow station was a reference station unaffected by hypoxia. The benthic macrofauna was simultaneously quantified from sieved grab samples. The sediment cores were frozen and later sliced with a plane in horizontal layers. Biogenic structures in these sections were digitally analysed for numbers, area and volume. Number of tubes and burrows showed a general decline with depth in the sediment. The biogenic structures in the sediment at the reference station increased the sediment-water interface about 1.5 times compared to the surface area. The surface areas of burrows and tubes were 2 to 3 times larger at the reference station than at the deeper stations. The benthic fauna at the 95-m and 118-m stations showed a temporal increase in density and number of species. In contrast, development of biogenic surface areas in the sediment at these stations showed no significant temporal trend during the benthic faunal succession. Relic tubes of Melinna cristata were found throughout the sampling period at the 118-m station. The ecological importance of bioirrigation for biogeochemical processes is discussed.     

Spatial variation in maximum dive depth in gray seals in relation to foraging

Habitat preference maps are a way of representing animals' space use in two dimensions. For marine animals, the third dimension is an important aspect of spatial ecology. We used dive data from seven gray seals Halichoerus grypus (a primarily benthic forager) collected with GPS phone tags (Sea Mammal Research Unit) to investigate the distribution of the maximum depth visited in each dive. We modeled maximum dive depth as a function of spatiotemporal covariates using a generalized additive mixed model (GAMM) with individual as a random effect. Bathymetry, horizontal displacement, latitude and longitude, Julian day, sediment type, and light conditions accounted for 37% of the variability in the data. Persistent patterns of autocorrelation in the raw data suggest that individual intrinsic rhythm might be an important factor, not captured by external covariates. The strength of using this statistical method to generate spatial predictions of the distribution of maximum dive depth is its applicability to other plunge and pursuit divers. Despite being predictions of a point estimate, these maps provide some insight into the third dimension of habitat use in marine animals. The capacity to predict this aspect of vertical habitat use may help avoid conflict between animal habitat and coastal or offshore developments.     

Living benthic foraminifera of the Okhotsk Sea: Faunal composition,standing stocks and microhabitats

Live (Rose Bengal stained) benthic foraminifera were investigated in surface sediment samples from the Okhotsk Sea to reveal the relationship between faunal characteristics and environmental parameters. Live benthic foraminifera were quantified in the size fraction > 125 µm in the upper 8 cm of replicate sediment cores, recovered with a multicorer at five stations along the Sakhalin margin, and at three stations on the southwestern Kamchatka slope. The stations are from water depths between 625 to 1752 m, located close or within the present Okhotsk Sea oxygen minimum zone, with oxygen levels between 0.3 and 1.5 ml l^- 1. At the high-productivity and ice-free Kamchatka stations, live benthic foraminifera are characterized by maximal standing stocks (about 1700-3700 individuals per 50 cm²), strong dominance of calcareous species (up to 87-91% of total live faunas), and maximal habitat depths (down to 5.2-6.7 cm depth). Vertical distributions of total faunal abundances exhibit a clear subsurface maximum in sediments. At the Sakhalin stations, which are seasonally ice-covered and less productive, live benthic foraminifera show lower standing stocks (about 200-1100 individuals per 50 cm²), lower abundance of calcareous species (10-64% of total live faunas), and shallower habitat depths (down to 2.5-5.4 cm depth). Faunal vertical distributions are characterized by maximum in the uppermost surface sediments. It is suggested that 1) lower and strongly seasonal organic matter flux, caused by the seasonal sea ice cover and seasonal upwelling, 2) lower bottom water oxygenation (0.3-1.1 ml l^- 1), and 3) more pronounced influence of carbonate undersaturated bottom water along the Sakhalin margin are the main factors responsible for the observed faunal differences. According to species downcore distributions and average living depths, common calcareous species were identified as preferentially shallow, intermediate and deep infaunal. Foraminiferal microhabitat occupation correlates with the organic matter flux and the depth of the oxygenated layer in sediments.     

Living benthic foraminifera of the Okhotsk Sea: Faunal composition, standing stocks and microhabitats

Live (Rose Bengal stained) benthic foraminifera were investigated in surface sediment samples from the Okhotsk Sea to reveal the relationship between faunal characteristics and environmental parameters. Live benthic foraminifera were quantified in the size fraction > 125 µm in the upper 8 cm of replicate sediment cores, recovered with a multicorer at five stations along the Sakhalin margin, and at three stations on the southwestern Kamchatka slope. The stations are from water depths between 625 to 1752 m, located close or within the present Okhotsk Sea oxygen minimum zone, with oxygen levels between 0.3 and 1.5 ml l^- 1. At the high-productivity and ice-free Kamchatka stations, live benthic foraminifera are characterized by maximal standing stocks (about 1700-3700 individuals per 50 cm²), strong dominance of calcareous species (up to 87-91% of total live faunas), and maximal habitat depths (down to 5.2-6.7 cm depth). Vertical distributions of total faunal abundances exhibit a clear subsurface maximum in sediments. At the Sakhalin stations, which are seasonally ice-covered and less productive, live benthic foraminifera show lower standing stocks (about 200-1100 individuals per 50 cm²), lower abundance of calcareous species (10-64% of total live faunas), and shallower habitat depths (down to 2.5-5.4 cm depth). Faunal vertical distributions are characterized by maximum in the uppermost surface sediments. It is suggested that 1) lower and strongly seasonal organic matter flux, caused by the seasonal sea ice cover and seasonal upwelling, 2) lower bottom water oxygenation (0.3-1.1 ml l^- 1), and 3) more pronounced influence of carbonate undersaturated bottom water along the Sakhalin margin are the main factors responsible for the observed faunal differences. According to species downcore distributions and average living depths, common calcareous species were identified as preferentially shallow, intermediate and deep infaunal. Foraminiferal microhabitat occupation correlates with the organic matter flux and the depth of the oxygenated layer in sediments.     

The relative importance of spatial and environmental processes in distribution of benthic chironomid larvae within a large and shallow lake

Although chironomids are popular model organisms in ecological research and indicators of bioassessment, the relative role of dispersal and environmental filtering in their community assembly is still poorly known, especially at fine spatial scales. In this study, we applied a metacommunity framework and used various statistical tools to examine the relative role of spatial and local environmental factors in distribution of benthic chironomid taxa and their assemblages in large and shallow Lake Balaton, Hungary. Contrary to present predictions on the metacommunity organisation of aquatic insects with winged terrestrial adults, we found that dispersal limitation can considerably affect distribution of chironomids even at lake scale. However, we also revealed the predominant influence of environmental filtering, and strong taxa–environment relationships were observed especially along sediment type, sediment organic matter content and macrophyte coverage gradients. We account that identified reference conditions and assemblages along with specified optima and tolerances of the abundant taxa can contribute to our understanding of chironomid ecology and be utilised in shallow lake bioassessment. Further, we propose that predictive models of species–environment relationships should better take into account pure spatial structuring of local communities and species-specific variability of spatial processes and environmental control even at small spatial scales.     

Distribution of recent benthic foraminifera in shelf carbonate environments of the Western Mediterranean Sea

The distribution of recent shallow-water benthic foraminifera in surface sediment samples from cool-water carbonate environments of the Oran Bight, Alboran Platform and Mallorca Shelf in the Western Mediterranean Sea was studied. Multivariate statistical analyses resulted in the identification of species assemblages, representing different environmental settings. In all three regions the assemblages show a distinct bathymetric zonation that is mainly attributed to the distribution of rhodoliths and related substrates, but also to water turbulence and the availability of food at the sea floor. The live assemblages (Rose Bengal stained individuals) are characterised by rather low diversity and low standing stocks, likely reflecting seasonal population dynamics. In the Oran Bight, elevated standing stocks of “high food”-taxa suggest the impact of anthropogenic eutrophication on the near-coastal benthic ecosystems of this area. The diversity of the dead assemblages is higher than in siliclastic shelf ecosystems of the Mediterranean Sea but lower when compared to carbonate environments of the Levantine Sea. This regional difference is mainly attributed to lower sea surface temperatures and the lack of Lessepsian invaders in the western Mediterranean Sea. In all study areas, a distinct faunal change occurs between approximately 80–90 m water depth. This change coincides with the lower distribution limit of living rhodoliths at the shelf of Mallorca, providing coarse-grained substrates that are dominated by attached taxa. Below this depth interval, the fauna shows regional differences depending on the grain-size and related accumulation of organic material. Fine-grained substrates with infaunal niches are restricted to low-energy environments on the deeper shelf southwest off Mallorca.     

Benthische Foraminiferen auf dem Island-Schottland Rücken: Umwelt-Anzeiger an der Grenze zweier ozeanischer Räume

Surface sediment samples taken by box corer from 32 stations on the Iceland-Scotland Ridge have been investigated for their benthic foraminiferal content. The live (Rose Bengal stained) benthic foraminiferal fauna was differentiated from empty tests comprising the foraminiferal death assemblage. Principal component analysis of both the live and dead faunal data from the Iceland-Scotland Ridge reveals eight live species assemblages and six corresponding dead assemblages. Bottom water current conditions, surface sediment characteristics, particulate organic matter supply, and to some extent also the bottom water temperatures are the main factors limiting and governing the composition and distribution of live benthic foraminiferal species assemblages on the Iceland-Scotland Ridge. On the Atlantic slope of the Iceland-Scotland Ridge the dead species assemblages differ greatly from the foraminiferal fauna living there today due to winnowing processes and redeposition of Pleistocene sediments. In this area an investigation of distribution patterns of the empty tests only would lead to wrong results concerning ecologic interrelations between benthic foraminiferal species assemblages and their environment.     

Edge effects on ground beetles at the woodlot–field interface are short‐range and asymmetrical

• 1 Boundaries between woodlots and agricultural habitats are numerous in temperate agricultural landscapes and influence ecological processes in both woodlots and agricultural habitats.
• 2 We aimed to determine how far the species assemblage of ground beetles in woodlot and open habitats was influenced by the presence of the woodlot–field boundary.
• 3 We studied the distribution of ground beetles on both sides of the boundaries of four woodlots along transects of pitfall traps (n = 140). The depth of edge influence (i.e. the distance from the boundary at which the presence of the boundary has no more significant influence) on the species assemblage of ground beetles in each woodlot and in each agricultural habitat was determined with nonlinear canonical analysis of principal coordinates, an ordination method that is followed by nonlinear regression of the principal coordinates on distance from the boundary.
• 4 The depth of edge influence on the species assemblages of ground beetles was asymmetrical relative to the boundary: it was generally higher and had higher variability in open habitats (14.4 ± 12.3 m) than in woodlots (4.9 ± 2.3 m). Species assemblages of ground beetles in edges were a mix between both adjacent species assemblages. Edge effects in woodlots were deeper in the woodlots exhibiting a deeper penetration of open habitat species. Symmetrically, edge effects in open habitat were deeper in the open habitats with a deeper diffusion of forest species into the open habitat.
• 5 Forest ground beetles were not threatened by edge effects. Rather, edge effects are likely to benefit agriculture, mostly through the dispersal of predatory forest species into agricultural fields.

     

Neogene paleoceanographic events recorded in an active-margin setting: Humboldt basin, California

Recognition of North Pacific paleoceanographic events in the marginal Humboldt (Eel River) basin of northern California enables correlation of stratigraphic sections and development of a chronostratigraphy. Paleoclimatically related coiling shifts in Neogloboquadrina pachyderma (Ehrenberg) and benthic foraminiferal datums form the basis of the chronostratigraphy. Benthic foraminiferal datums are defined by the occurrence of selected benthic species and abundance maxima of benthic biofacies. The compiled chronostratigraphy is used to refine reconstructions of the depositional history of Humboldt basin. Paleoceanographic events, recognized by the distribution of benthic foraminiferal biofacies, are used to infer paleoceanographic history along the northeastern Pacific margin.

The similarity in coiling curves of N. pachyderma from the marine sequence at DSDP Site 173 and the coastal Centerville Beach section of Humboldt basin and at other independently dated sites along the northeastern Pacific margin demonstrates that matching records of climatic oscillations is a reliable method of correlating marine sequences. Benthic fauna from the Centerville Beach section vary in phase with climatically related coiling shifts in N. pachyderma. In particular these data show an increase in displaced neritic fauna during inferred warm intervals and resurgence of deeper bathyal fauna during inferred cool events. Similar data are observed from the inland Eel River section, demonstrating that benthic foraminiferal trends recognized at Centerville Beach can be identified elsewhere in Humboldt basin. This in-phase benthic response to climatic fluctuations probably results from changes in vertical depth range of many benthic species in response to paleoclimatically related vertical changes in water-mass position.

Depositional histories reconstructed for two key sites in southern Humboldt basin indicate low rates of sediment accumulation during early basin filling with hemipelagic sediments. Initiation of turbidite sedimentation in the early Pliocene resulted in a sharp increase in rate of sediment accumulation. This increase in rate of sediment accumulation is partially a response to tectonic uplift in the northern Coast Ranges and may be an effect of realignment of motion between the Pacific and North American plates at about this time. The inland site shoaled more rapidly during turbidite sedimentation as a result of a higher rate of sediment accumulation. The rate of sediment accumulation increased again at this site in the late Pliocene during deposition of shelf and nearshore facies. The Eel River region subsided concurrent with deposition of these shallow-water deposits.     

Recent benthic foraminiferal assemblages from cold-water coral mounds in the Porcupine Seabight

Cold-water coral ecosystems are characterised by a high diversity and population density. Living and dead foraminiferal assemblages from 20 surface sediment samples from Galway and Propeller Mounds were analysed to describe the distribution patterns of benthic foraminifera on coral mounds in relation to different sedimentary facies. Hard substrates were examined to assess the foraminiferal microhabitats and diversities in the coral framework. We recognised 131 different species, of which 27 prefer an attached lifestyle. Epibenthic species are the main constituents of the living and dead foraminiferal assemblages. The frequent species Discanomalina coronata was associated with coral rubble, Cibicides refulgens showed preference to the off-mound sand veneer, and Uvigerina mediterranea displayed abundance maxima in the main depositional area on the southern flank of Galway Mound, and in the muds around Propeller Mound. The distribution of these species is rather governed by their specific ecological demands and microhabitat availability than by the sedimentary facies. Benthic foraminiferal assemblages from coral mounds fit well into basin-wide-scale distribution patterns of species along the western European continental margin. The diversity of the foraminiferal faunas is not higher on the carbonate mounds as in their vicinity. The living assemblages show a broad mid-slope diversity maximum between 500 and 1,300 m water depth, which is the depth interval of coral mound formation at the Celtic and Amorican Margin. The foraminiferal diversity maximum is about 700 m shallower than comparable maxima of nematodes and bivalves. This suggests that different processes are driving the foraminiferal and metazoan diversity patterns.     

Depth distribution of photosynthetic pigments and diatoms in the sediments of a microtidal fjord

The depth distribution of photosynthetic pigments and benthic marine diatoms was investigated in late spring at three different sites on the Swedish west coast. At each site, sediment cores were taken at six depths (7–35 m) by scuba divers. It was hypothesized that (1) living benthic diatoms constitute a substantial part of the benthic microflora even at depths where the light levels are <1% of the surface irradiance, and (2) the changing light environment along the depth gradient will be reflected in (a) the composition of diatom assemblages, and (b) different pigment ratios. Sediment microalgal communities were analysed using epifluorescence microscopy (to study live cells), light microscopy and scanning electron microscopy (diatom preparations), and HPLC (photosynthetic pigments). Pigments were calculated as concentrations (mg m^–2) and as ratios relative to chlorophyll a. Hypothesis (1) was accepted. At 20 m, the irradiance was 0.2% of surface irradiance and at 7 m, 1%. Living (epifluorescent) benthic diatoms were found down to 20 m at all sites. The cell counts corroborated the diatom pigment concentrations, decreasing with depth from 7 to 25 m, levelling out between 25 and 35 m. There were significant positive correlations between chlorophyll a and living (epifluorescent) benthic diatoms and between the diatom pigment fucoxanthin and chlorophyll a. Hypothesis (2) was only partly accepted because it could not be shown that light was the main environmental factor. A principal component analysis on diatom species showed that pelagic forms characterized the deeper locations (25–35 m), and epipelic–epipsammic taxa the shallower sites (7–20 m). Redundancy analyses showed a significant relationship between diatom taxa and environmental factors – temperature, salinity, and light intensities explained 57% of diatom taxa variations.     

Influence of the mode of macrofauna-mediated bioturbation on the vertical distribution of living benthic foraminifera: First insight from axial tomodensitometry

We investigated the influence of bioturbation by macrofauna on the vertical distribution of living (stained) benthic foraminifera in marine intertidal sediments. We investigated the links between macrofaunal bioturbation and foraminiferal distribution, by sampling from stations situated on a gradient of perturbation by oyster-farming, which has a major effect on benthic faunal assemblages. Sediment cores were collected on the French Atlantic coast, from three intertidal stations: an oyster farm, an area without oysters but affected by oyster biodeposits, and a control station. Axial tomodensitometry (CT-scan) was used for three-dimensional visualization and two-dimensional analysis of the cores. Biogenic structure volumes were quantified and compared between cores. We collected the macrofauna, living foraminifera, shells and gravel from the cores after scanning, to validate image analysis. We did not investigate differences in the biogenic structure volume between cores. However, biogenic structure volume is not necessarily proportional to the extent of bioturbation in a core, given that many biodiffusive activities cannot be detected on CT-scans. Biodiffusors and larger gallery-diffusors were abundant in macrofaunal assemblage at the control station. By contrast, macrofaunal assemblages consisted principally of downward-conveyors at the two stations affected by oyster farming. At the control station, the vertical distribution of biogenic structures mainly built by the biodiffusor Scorbicularia plana and the large gallery-diffusor Hediste diversicolor was significantly correlated with the vertical profiles of living foraminifera in the sediment, whereas vertical distributions of foraminifera and downward-conveyors were not correlated at the station affected by oyster farming. This relationship was probably responsible for the collection of foraminifera in deep sediment layers (> 6 cm below the sediment surface) at the control station. As previously suggested for other species, oxygen diffusion may occur via the burrows built by S. plana and H. diversicolor, potentially increasing oxygen penetration and providing a favorable microhabitat for foraminifera in terms of oxygen levels. By contrast, the absence of living foraminifera below 6 cm at the stations affected by oyster farming was probably associated with a lack of biodiffusor and large gallery-diffusor bioturbation. Our findings suggest that the effect of macrofaunal bioturbation on the vertical distribution of foraminiferal assemblages in sediments depends on the effects of the macrofauna on bioirrigation and sediment oxidation, as deduced by Eh values, rather than on the biogenic structure volume produced by macrofauna. The loss of bioturbator functional diversity due to oyster farming may thus indirectly affect infaunal communities by suppressing favorable microhabitats produced by bioturbation.     

Intertidal zonation and latitudinal gradients on macroalgal assemblages: Species,functional groups and thallus morphology approaches

Macroalgae are unavoidable biological elements when monitoring and assessing costal environments. However, these tasks can be difficult to address because macroalgae a) present a high natural variability across a range of spatial and temporal scales, b) they imply a high sampling and laboratory processing effort and good taxonomical expertise (as they are a very diverse group of species), and c) there is insufficient knowledge about their structural and functional characteristics. This work addressed how the vertical (intertidal zonation) and horizontal (latitudinal gradient) variability of macroalgae assemblages are structured across continental Portugal, as well as how some surrogates for species-level biodiversity measures (namely functional groups and thallus morphology approaches) respond to such large-scale variability. Particularly, it was tested if intertidal zonation patterns are higher than fine-scale horizontal variation, and however, if vertical variation decreases along broad-scale horizontal variation. To do so, cover per species was taken (using a photographical and GIS methodological approach) from five sites located along the shoreline and along respective upper- mid- and lower-intertidal zones. The work findings include that both intertidal and latitudinal gradients impose deep structural changes on assemblages patterns. That is, broad-scale processes along Portuguese latitudes act as strongly as vertical stress gradients on assemblages patterns. Functional groups and thallus morphology approaches were useful to generalize the latitudinal assemblages patterns, where some groups emerge at the expense of others, and may improve biodiversity understanding and ecological synthesis. Because these surrogates decrease taxonomical expertise needs and can provide insight into the functional structure of macroalgal communities, their patterns founded may be particularly useful as reference data for further monitoring, so that shifts in such patterns might represent early warning surrogate approaches to detect environmental impact changes. Ultimately, to generate broader databases on rocky shore assemblages diversity (from species-level to functional groups and thallus morphologies approaches) can be useful for large-scale comparisons and for establishing ecological reference conditions, including for monitoring programs and environmental impact studies.     

Vertical distribution of benthic nematodes in an oligotrophic lake: seasonality, species and age segregation

The vertical distribution of nematodes up to 20 cm sediment depth was studied over a one-year period in the alpine, oligotrophic lake Königssee. Ten water depths were examined, four of which correspond to the littoral (1 m, 2 m, 5 m, 10 m), three to the littoriprofundal (15 m, 20 m, 30 m) and three to the profundal (60 m, 120 m, 190 m). The sediment was devided into four layers (0–2 cm, 2–5 cm, 5–10 cm and 10–20 cm). (1) The highest proportion of nematodes was found in the top layer. Out of 45 263 nematodes, 89% were found in the first 5 cm of the sediment and only 1 % deeper than 10 cm. (2) The proportion of nematodes in the top layer increased along with water depth. Water depth was a better predictor of percentage of nematodes in the top layer than particle size or content of organic carbon in the sediment. (3) There were considerable differences among species in their vertical distribution in the sediment. (4) There was a significant trend for juveniles to occupy more superficial layers than adults across various species. (5) There are time related vertical preferences among adults and juveniles of several nematode species across the year, suggesting vertical migration in the sediment (e.g. Aphanolaimus aquaticus Daday, Eumonhystera longicaudatula Gerlach & Riemann, Tobrilus gracilis Bastian, Monhystera paludicola de Man, Ethmolaimus pratensis de Man and Ironus tenuicaudatus de Man). The factors determining the vertical variation in nematode abundance in freshwater systems across space and time are still unknown.     

The effect of bioturbation by polychaetes (Opheliidae) on benthic foraminiferal assemblages and test preservation

Biological activity such as burrowing can alter benthic foraminiferal shell preservation and may also modify benthic foraminiferal assemblages by vertical mixing, inducing sediment homogenization. Here, we analyse benthic foraminiferal assemblages and taphonomy of upper Miocene marine deposits from Conil de la Frontera (Cádiz, south‐western Spain). The deposits consist of marls displaying a pervasive alternation of intensively bioturbated beds dominated by Macaronichnus segregatis traces (ichnofabric index 4–5) and non‐bioturbated beds. Benthic foraminiferal assemblages are dominated by Cibicidoides mundulus and Cibicides refulgens, indicating that the marls were deposited on an oligotrophic, well‐oxygenated upper slope. The impact of burrowing on the preservation of benthic foraminiferal tests was tested using Q‐mode cluster analysis, which found two well‐differentiated groups of samples, one including the non‐bioturbated beds and the other encompassing the bioturbated ones. Fragmentation and recrystallization account for the differentiation of these groups, both being higher in the bioturbated sediments. Aggressive chemical digestion by the Macaronichnus trace‐makers, assumed to be a polychaete worm of the family Opheliidae, etched the microfossil shells, making them more vulnerable to fragmentation. Intense bioturbation favoured the circulation of pore fluids, encouraging recrystallization. Pervasive burrowing resulted in significant vertical reworking of microfossils. As a consequence, benthic foraminiferal assemblages in the bioturbated beds were homogenized in the mixed layer; that is, the uppermost layer of the substrate totally burrowed. The alternation of bioturbated and non‐bioturbated beds reflects episodic transfer of food particles down slope from shallower parts of the shelf as well as from the continent due to storms under otherwise homogeneous oligotrophic marine conditions.     

Do isolation and local habitat jointly limit the structure of stream invertebrate assemblages?

1. Both local and regional processes simultaneously control species assemblages depending on spatial habitat configuration. In dendritic networks like streams, the unique spatial arrangement of habitats produces various combinations of local habitat size and isolation. Stream invertebrate assemblages could therefore be controlled by different combinations of local and regional processes, depending on their location in the network. 2. Using quantile regression, we investigated how local habitat size, local environmental conditions and spatial isolation influenced variation in assemblage composition. Adult Trichoptera and benthic macroinvertebrate assemblages were represented by non‐metric multidimensional scaling (NMDS) ordination scores, as were local environmental conditions, in four headwater stream networks in New Zealand. 3. With increasing local habitat size, there was a decrease in variation in assemblage composition (NMDS scores) of both adult Trichoptera and benthic macroinvertebrates. This relationship between habitat size and assemblage variation was related to local habitat conditions at the upper limit of assemblage variability and spatial isolation at the lower limit of assemblage variability, for both adult Trichoptera and benthic assemblages, indicating joint local and regional controls on stream invertebrate assemblages. 4. The relationships between local assemblages and their neighbours, based on community similarity scores, differed between benthic macroinvertebrates and adult Trichoptera. For benthic assemblages, the larger the stream, the more similar assemblages were to neighbouring assemblages, whereas there was no consistent relationship between assemblage similarity and stream size for adult Trichoptera. This difference in structuring could be attributed to contrasting spatial influences linked to the different dispersal modes of adults and larvae. However, because adult and benthic assemblages are not independent, the influence of life stage on spatial distribution is difficult to determine (i.e. it is essentially a ‘chicken and egg’ argument). 5. Overall, our approach using quantile regression to evaluate limit responses, rather than regressions on means, has highlighted the joint importance of local habitat and spatial processes in structuring stream invertebrate assemblages. Furthermore, we have provided evidence for the importance of the spatial network arrangement and interactions between life stages and dispersal processes, in structuring stream assemblages.     

Swimming ability and behaviour of post-larvae of a temperate marine fish re-entrained in the pelagic environment

The degree to which behaviour, vertical movement and horizontal transport, in relation to local hydrodynamics, may facilitate secondary dispersal in the water column was studied in post-larval Sillaginodes punctata in Port Phillip Bay, Australia. S. punctata were captured in shallow seagrass beds and released at the surface in three depth zones (1.5, 3 and 7 m) off-shore at each of two sites to mimic the re-entrainment of fish. The behaviour, depth and position of S. punctata were recorded through time. The direction and speed of local currents were described using an S4 current meter and the movement of drogues. Regardless of site, fish immediately oriented toward the bottom, and into the current after release. In shallow water (1.5 m), 86% of fish swam to the bottom within 2 min of release. At one site, the net horizontal displacement of fish was largely unrelated to the speed and direction of local currents; at a second site, fish could not maintain their position against the current, and the net horizontal displacement was related to the speed and direction of currents. In the intermediate depth zone, wide variability in depths of individual fish through time led to an average depth reached by fish that was between the shallow and deep zones. Based on daily increments in the otoliths, however, this variability was not related significantly to the time since entry of fish into Port Phillip Bay. In the deepest depth zone, 81% of fish remained within 1 m of the surface and their horizontal displacement was significantly related to the direction and speed of currents. Secondary dispersal of post-larval fish in the water column may be facilitated by the behaviour and vertical movements of fish, but only if fish reach deeper water, where their displacement (direction and distance) closely resembles local hydrodynamic regimes. In shallow water, fish behaviour and vertical migration actually reduce the potential for secondary dispersal.