Are polycomb group bodies gene silencing factories?

Polycomb group (PcG) proteins mediate long-range associations between Hox genes, which correlate with gene repression in vivo. Bantignies et al. (2011) identify a physiological role for the nuclear localization of Hox genes in PcG-mediated gene silencing, strengthening the evidence that nuclear positioning regulates gene expression.     

Are the carotid bodies of the guinea-pig functional?

We have previously observed that the guinea-pig appears to have a relatively poor ventilatory (V (E)) response to hypoxia, compared to other mammals. Therefore, in this study, we questioned the ability of the carotid bodies (primary peripheral chemoreceptors) in the guinea-pig to detect hypoxia. The ventilatory responses to poikilocapnic hypoxia (8% O(2)), poikilooxic hypercapnia (8% CO(2)), hyperoxia (100% O(2)) and cyanide (NaCN - 200 mug/kg, i.v.) were assessed before and after carotid body denervation (CBD) in anaesthetized guinea-pigs. Although CBD attenuated the V (E) responses to hypercapnia and cyanide, it had no effect on normoxic breathing or the V (E) responses to hypoxia or hyperoxia. In a separate group of guinea-pigs, nerve activity was recorded from single or few-fibre preparations of the carotid sinus nerve (CSN). Basal chemoreceptor activity could not be detected from any of the nerve preparations. NaCN and hypercapnia consistently provoked an increase in neural activity. In contrast, hypoxia never clearly increased activity in any of the single or few-fibre preparations isolated from the CSN. In conclusion, although the carotid bodies of the guinea-pig, like those of other mammals, are able to detect hypercapnia and histotoxic hypoxia and elicit a reflex increase in V (E), they are essentially hypoxia-insensitive. The latter may explain, at least in part, the relatively poor V (E) response to hypoxia shown by the guinea-pig.     

Are fluorescent bodies of Y-spermatozoa detectable in common with mammalan species?

An attempt was made to detect the fluorescent bodies (F-body), using Quinacrine mustard (Q-M) staining in the spermatozoa from eight mammalian species (human, bull, boar, dog, rabbit, rat, mouse, and mastomys) as well as in the cock (used as negative control). Sperm suspension, prepared after rinsing by repeated centrifugation with phosphate buffered saline (PBS), was either stained with Q-M for 24 h or treated with protease and then stained with Q-M for 60 min. The final concentration of Q-M in the mixed staining sperm suspension was 0.025 mg/ml. The examination using a reflecting fluorescent microscope revealed that the F-body found in human sperm was also present in the sperm of all the mammals but not in the cock after 24 h of staining. The enzyme-treated specimens showed higher incidences of F-bodies than specimens stained for 24 h without enzymatic digestion. These findings strongly suggest that the F-body is commonly present in the spermatozoa of many mammalian species.     

Inclusion bodies and autophagosomes: Are ER-derived protective organelles different than classical autophagosomes?

A hallmark of some endoplasmic reticulum (ER)-storage diseases is the formation of inclusion bodies (IBs) that are membrane-limited. The nature and function of the IBs has started to be investigated. We have recently found that sequestration of mutated α1-antitrypsin (ATZ) into IBs is a cell protective mechanism that maintains ER function. We also found that IBs are ER-derived and yet separate from the main ER and do not have markers of autophagosomes and lysosomes. We propose that formation of the IBs is a quality control mechanism that leads to storage of unwanted proteins outside the secretory pathway by a mechanism different than direct autophagosome formation from the ER.

Addendum to: Granell S, Baldini G, Mohammad S, Nicolin V, Narducci P, Storrie B, Baldini G. Sequestration of mutated Éø-1-antitrypsin into inclusion bodies is a cell protective mechanism to maintain endoplasmic reticulum function. Mol Biol Cell 2008; 19:571-85.     

Are promyelocytic leukaemia protein nuclear bodies a scaffold for caspase-2 programmed cell death?

Promyelocytic leukaemia protein nuclear bodies (PML-NBs) are nuclear structures whose function is still poorly understood. They are implicated in various biological functions, such as viral infection, cellular transformation, innate immunity and growth control, and they might be dynamic hubs sensing stress and DNA damage. Data from PML(-/-) mice suggest that PML-NBs are involved in apoptosis via caspase-independent mechanisms, probably involving p53-dependent and independent pathways. However, the recently demonstrated co-localization of caspase-2 within the PML-NB nuclear structures presents a new paradigm for nuclear cell death. Here, we show that these nuclear structures have a protein known as SP100 that could contain a caspase recruitment domain (CARD). If verified experimentally, this discovery will suggest a mechanism by which caspase-2 could be recruited into the complex and ultimately lead to apoptosis.     

Are the supportive structures of the tardigrade pharynx homologous throughout the entire group?

Based on the differences in position, structure and function of the cuticular supportive structures in the pharynx of representatives of two major groups of tardigrades, the Heterotardigrada and Eutardigrada, it is postulated that these structures are not homologous throughout the Tardigrada. Hithero, these structures have been termed placoids in both classes (fused placoids in Heterotardigrada versus macro- and microplacoids in Eutardigrada). It is proposed here that there are two different kinds of fused placoids within the Heterotardigrada and that only one of these is homologous to the macro- and microplacoids of the Eutardigrada. It is furthermore proposed that the plesiomorphic condition for the tardigrade pharynx is without reinforced cuticular supportive structures and not the presence of encrusted fused placoids as found in Heterotardigrada.     

Are aquatic assemblages from small water bodies more stochastic in dryer climates? An analysis of ostracod spring metacommunities

Metacommunity ecology describes community organisation considering both environmental and spatial processes. We tested the relative importance of environmental and spatial factors on spring ostracod assemblages from four European regions characterised by different climatic conditions (e.g. aridity). Pure and shared effects of environment and space were calculated using redundancy analysis and variation partitioning. Both environmental and spatial variables significantly explain assemblage variation, although with different relevance among areas. The amount of variation explained by environmental factors decreased with increasing climate aridity. The reduced size of spring habitats makes them prone to drying events, which are more frequent in dryer climates. Frequent disturbances may lead to local extinctions followed by colonisations from nearby sites, in a source–sink dynamics. Early recolonisation leads to random assemblages and reduces the match between organisms and environmental conditions. As a consequence, a low amount of community variation can be explained by environmental variables. Conversely, the settled communities from wetter climates best fit the ecological characteristics of sites, and deterministic processes, such as species sorting, dominate the assemblages. In conclusion, in the studied regions, ostracod communities from small water bodies of dryer climates seem to be mainly driven by stochastic dynamics when compared to more continental areas.     

Are endosymbioses mutualistic?

Many animals, plants and protists contain non-parasitic microorganisms and these endosymbioses are widely assumed to be mutualistic. Most of the microorganisms possess metabolic capabilities, such as the ability to fix nitrogen, photosynthesize or degrade cellulose, that their partners utilize. However, as discussed in this article, there is scant evidence that the microorganisms benefit from such associations, and it is unclear how the benefit or harm incurred by microorganisms that require the association can be demonstrated.     

Are mAbs different?

Apart from the nifty science behind their development, are monoclonal antibodies (mAbs) different than other new technologies? As highlighted by Cohen and Wilson in their interesting new paper, mAbs are distinctive from most traditional pharmaceuticals in some ways: their relatively high prices; their high costs of development; their mode of administration; the fact that, unlike many other drugs, they offer disease modification not simply symptomatic relief; the frequency of supplemental indications and off-label use – much of it recognized in drug compendia and reimbursable; and the lack of a clear pathway for their generic substitution.     

Are kea prosocial?

Prosocial behaviour is widespread in humans, but evidence for its occurrence in other species is mixed. We presented a parrot species, the kea (Nestor notabilis) with a series of experiments to test whether they exhibit prosocial tendencies. Across the first round of testing, in our first condition, two of the four kea acted prosocially, as they preferred to choose a prosocial token which rewarded both themselves and a partner, rather than a token that rewarded only themselves. Three of the four kea then showed a preference for the prosocial token in a second condition where they alternated taking turns with a partner. However, no kea showed a decrease in the third yoked control condition in which the experimenter replicated the token choice made by the partner in the previous alternating trials. This yoked condition was used to dissociate truly reciprocal behaviour, whereby the actor made choices based on their partner's choices, from a response to the amount of rewards conferred to the partner. Finally, three of the four kea continued to choose the prosocial token in the fourth asocial control condition where no partner was present. However, in round two of testing, one kea changed its token choices to a similar pattern to that expected if kea are prosocial, in that it preferred the prosocial token in the initial condition, showed a trend for the prosocial token when turns were alternated, but chose at chance in the yoked and asocial conditions. This study therefore found no evidence of spontaneous reciprocity in kea but further testing is required before we can conclude that kea are not capable of prosocial behaviour at all.