Monitoring temporal dynamics of Great Artesian Basin wetland vegetation,Australia, using MODIS NDVI

The Great Artesian Basin springs (Australia) are unique groundwater dependent wetland ecosystems of great significance, but are endangered by anthropogenic water extraction from the underlying aquifers. Relationships have been established between the wetland area associated with individual springs and their discharge, providing a potential means of monitoring groundwater flow using measurements of vegetated wetland area. Previous attempts to use this relationship to monitor GAB springs have used aerial photography or high resolution satellite images and gave sporadic temporal information. These “snapshot” studies need to be placed within a longer and more regular context to better assess changes in response to aquifer draw-downs. In this study we test the potential of 8 years of Moderate Resolution Imaging Spectroradiometer Normalised Difference Vegetation Index data as a long-term tracer of the temporal dynamics of wetland vegetation at the Dalhousie Springs Complex of the Great Artesian Basin. NDVI time series were extracted from MODIS images and phenologies of the main wetland vegetation species defined. Photosynthetic activity within wetlands could be discriminated from surrounding land responses in this medium resolution imagery. The study showed good correlation between wetland vegetated area and groundwater flow over the 2002–2010 period, but also the important influence of natural species phenologies, rainfall, and anthropogenic activity on the observed seasonal and inter-annual vegetation dynamics. Declining trends in the extent (km²) of vegetated wetland areas were observed between 2002 and 2009 followed by a return of wetland vegetation since 2010. This study underlines the need to continue long-term medium resolution satellite studies of the GAB to fully understand variability and trends in the spring-fed wetlands. The MODIS record allows a good understanding of variability within the wetlands, and gives a high temporal-frequency context for less frequent higher spatial resolution studies, therefore providing a strong baseline for assessment of future changes.     

Molecular phylogeny and biogeography of spring-associated hydrobiid snails of the Great Artesian Basin, Australia

The Great Artesian Basin (GAB) of Australia underlies some of the driest parts of South Australia and Queensland and feeds numerous freshwater springs. Prominent and endangered components of the GAB spring community are snails of the family Hydrobiidae. This paper examines the evolutionary relationships of the entire hydrobiid fauna associated with the GAB, and includes appropriate non-GAB species to place the GAB fauna in a broader phylogenetic context. The Queensland genus Jardinella is a focus of this paper, providing a fine scale examination of relationships between spring supergroups in the northeastern regions of the GAB. Maximum parsimony and Bayesian analyses performed on 16S, CO1, and combined sequence data from 40 hydrobiid taxa found four major clades of Australian taxa. The analysis revealed that at least three separate colonization events of the GAB spring fauna have occurred. Two of these are represented by considerable radiations, (1) Jardinella to the north and east and (2) Caldicochlea, Fonscochlea, and possibly Trochidrobia in South Australia. The phylogenetic position of the latter is uncertain so it may represent yet another invasion. The third definite invasion is represented by a single species of the speciose SE Australian genus Austropyrgus in the Dalhousie Springs in South Australia. Jardinella is found to be monophyletic, and with one exception, its members in each of the Queensland spring supergroups are found to be monophyletic.     

Microbial community in a geothermal aquifer associated with the subsurface of the Great Artesian Basin, Australia

To investigate the biomass and phylogenetic diversity of the microbial community inhabiting the deep aquifer of the Great Artesian Basin (GAB), geothermal groundwater gushing out from the aquifer was sampled and analyzed. Microbial cells in the groundwater were stained with acridine orange and directly counted by epifluorescence microscopy. Microbial cells were present at a density of 10⁸–10⁹ cells per liter of groundwater. Archaeal and bacterial small-subunit rRNA genes (rDNAs) were amplified by PCR with Archaea- and Bacteria-specific primer sets, and clone libraries were constructed separately. A total of 59 clones were analyzed in archaeal and bacterial 16S rDNA libraries, respectively. The archaeal 16S rDNA clones were divided into nine operated taxonomic units (OTUs) by restriction fragment length polymorphism. These OTUs were closely related to the methanogenic genera Methanospirillum and Methanosaeta, the heterotrophic genus Thermoplasma, or miscellaneous crenarchaeota group. More than one-half of the archaeal clones (59% of total 59 clones) were placed beside phylogenetic clusters of methanogens. The majority of the methanogen-related clones (83%) was closely related to a group of hydrogenotrophic methanogens (genus Methanospirillum). The bacterial OTUs branched into seven phylogenetic clusters related to hydrogen-oxidizing thermophiles in the genera Hydrogenobacter and Hydrogenophilus, a sulfate-reducing thermophile in the genus Thermodesulfovibrio, chemoheterotropic bacteria in the genera Thermus and Aquaspirillum, or the candidate division OP10. Clones closely related to the thermophilic hydrogen-oxidizers in the genera Hydrogenobacter and Hydrogenophilus were dominant in the bacterial clone library (37% of a total of 59 clones). The dominancy of hydrogen-users strongly suggested that H₂ plays an important role as a primary substrate in the microbial ecosystem of this deep geothermal aquifer.     

Desulfovibrio longreachii sp. nov., a sulfate-reducing bacterium isolated from the Great Artesian Basin of Australia

Abstract A new mesophilic, thermotolerant sulfate-reducing bacterium, was isolated from the flowing bore waters of a deep aquifer, the Great Artesian Basin, Australia. The strain, designated isolate AB16910a, is a curved rod and resembled members of the genus Desulfovibrio . However, the isolate can be differentiated from other members of the Desulfovibrio species because of the high G+C content of 69±0.25% the 16S rRNA sequence data and other physiological characteristics. The name Desulfovibrio longreachii is proposed for the new isolate.     

Dental modifications and tool use in the western Great Basin

Nondietary function is an important concern in the study of the human dentition and its role in adaptation. The purpose of the present investigation is to describe and interpret a pattern of dental wear in the anterior dentition of precontact hunter-gatherers that inhabited the western Great Basin. These data are discussed in light of ethnographic documentation as a means by which the archaeological record is linked with associated behavior of the representative populations. A series of 171 dentitions from a group of archaeological localities was examined. Of 1,931 teeth observed, 16 of these showed narrow (0.4-2.0 mm) transverse grooves located on the midocclusal surfaces of anterior teeth. The grooves were restricted in occurrence to five older adult males. Documentation of prehistoric and historic western Great Basin aboriginal populations indicates an adaptation that involves use of plant materials in the production of a variety of utilitarian objects, such as fish nets, basketry, funerary bags, fowling bags, and rope. In postcontact contexts, the anterior dentition has been shown to play an important role in the preparation of materials used for the production of this equipment. It seems most likely, then, that the grooves observed herein resulted directly from the use of the dentition as part of the tool assemblage for the production of other tools.     

Introduction to the Special Section on Alternative Futures for Great Basin Ecosystems

Natural and anthropogenic processes are causing extensive and rapid ecological, social, and economic changes in arid and semiarid ecosystems worldwide. Nowhere are these changes more evident than in the Great Basin of the western United States, a region of 400,000 km² that largely is managed by federal agencies. Major drivers of ecosystems and human demographics of the Great Basin include human population growth, grazing by domestic livestock, extraction of minerals, development and production of energy, changes in fire and other disturbance regimes, and invasion of non-native annual plants. Exploration of alternative futures may increase the ability of management and policy to maximize the system's resistance and resilience to changes in climate, disturbance regimes, and anthropogenic perturbations. This special section examines the issues facing the Great Basin and then provides examples of approaches to predicting changes in land cover and avifaunal distributions under different management scenarios. Future sustainability of the Great Basin's natural and human systems requires strong, collaborative partnerships among research and management organizations that are capable of obtaining public support and financial resources and developing effective policies and institutional mechanisms.     

Pathological traits observed in a historic Great Basin Native American Indian Skeleton

During the excavation of an irrigation ditch in Churchill County, Nevada, a burial was encountered, with associated artifacts indicative of historical provenience. The pattern of occlusal attrition, the lack of dental work, and the skeletal morphology indicate the individual was a Great Basin Native American Indian. Sex determination was female and age at death estimated as 40±. The skeleton is nearly complete and several of the long bones, as well as the vertebrae, scapulae, sternum and xiphoid process have minor pathologies, either osteophytic growths or areas of porosities and pitted appearances. The left sacroiliac joint is extensively affected by an unusual pathology, with the auricular surfaces of both the sacrum and ilium having a scooped out or hollowed appearance. Although the other pathologies are interpreted as being related to both age and possibly the lifestyle of a female Great Basin Indian during historic times, the sacroiliac pathological condition is construed as a manifestation of a more severe affliction.     

Population genetics of Great Basin feral horses

The genetic make-up of Great Basin wild (feral) horses was investigated by blood typing studies. Blood samples of 975 feral horses from seven trap sites in Nevada and Oregon were tested by serological and electrophoretic techniques for genetic markers at 19 polymorphic loci. The average number of variants for the seven feral populations [72·1 ± 3·2 (SEM), range 62–85] was not significantly different from that of 16 domestic breeds (75·0 ± 11·5, range 58–105). The expected average frequency of heterozygotes per locus (average heterozygosity) for the feral populations (0·402 ± 0·009, range 0·368–0·442) was not significantly different from the domestic breeds (0·389 ± 0·045, range 0·295–0·443). Dendrograms constructed using pairwise comparisons of Nei's distance measurements substantiated anecdotal accounts of the origins of Great Basin horses from Iberian, American saddle horse and draft horse breeds.     

A brief history of Great Basin pikas

Aim Within the past few decades, seven of the 25 historically described populations of American pikas (Ochotona princeps) in the Great Basin of arid western North America appear to have become extinct. In this paper, the prehistoric record for pikas in the Great Basin is used to place these losses in deeper historical context. Location The Great Basin, or area of internal drainage, of the western United States. Methods The location, elevation, and age of all reported prehistoric Great Basin specimens of American pikas were extracted from the literature. Elevations of extinct pika populations were arrayed through time, and latitudes and longitudes of those populations used to determine changing distances of those populations from the nearest extant populations. Results The average elevation of now‐extinct Great Basin pika populations during the late Wisconsinan (c. 40,000–10,000 radiocarbon years ago) and early Holocene (c. 10,000–7500 years ago) was 1750 m. During the hot and dry middle Holocene (c. 7500–4500 years ago), the average elevation of these populations rose 435 m, to 2168 m. All prehistorically known late Holocene (c. 4500–200 years ago) populations in the Great Basin are from mountain ranges that currently support populations of this animal, but historic period losses have caused the average elevation of pika populations to rise an additional 152 m. The total elevational increase, from the late Wisconsinan and early Holocene to today, has been 783 m. As lower elevation pika populations were lost, their distribution increasingly came to resemble its modern form. During the late Wisconsinan, now‐extinct pika populations were located an average of 170 km from the nearest extant population. By the late Holocene, this distance had declined to 30 km. Main conclusions Prehistoric alterations in the distribution of pika population in the Great Basin were driven by climate change and attendant impacts on vegetation. Today, Great Basin pikas contend with both climate change and anthropogenic impacts and thus may be on the brink of extinction.     

Patterns and processes of nestedness in a Great Basin butterfly community

We examined nestedness and potential mechanisms causing that distributional pattern in resident butterfly communities of the Toiyabe Range, a mountain range in the central Great Basin of western North America. We tested whether life history characteristics, including habitat use and vagility, affected the relative degree of nestedness or mean species incidence. We also tested whether nestedness at the level of individual species was independent of life history. Relationships between distributional patterns and habitat use, particularly in ecologically sensitive riparian areas, are relevant to ongoing conservation planning in the Great Basin. The distributional pattern of the 68 resident butterfly species in 19 Toiyabe Range canyons was significantly nested, as was the distribution of all functional subgroups that we tested. Life history affected neither relative nestedness of species groups nor mean species incidence. More than 80% of the individual butterfly species that inhabit the Toiyabe Range had distributions that were more nested than expected. Colonization does not appear to have played an important role in determining the composition of butterfly communities in Toiyabe Range canyons. Likewise, selective dispersal has probably played a minor role in producing nested distributions of Toiyabe Range butterflies. Our results suggest either that impacts to riparian areas are not jeopardizing species viability, or that highly sensitive butterfly species have already been extirpated from the Toiyabe Range. Received: 15 February 1998 / Accepted: 19 December 1998     

Linking nitrogen partitioning and species abundance to invasion resistance in the Great Basin

Resource partitioning has been suggested as an important mechanism of invasion resistance. The relative importance of resource partitioning for invasion resistance, however, may depend on how species abundance is distributed in the plant community. This study had two objectives. First, we quantified the degree to which one resource, nitrogen (N), is partitioned by time, depth and chemical form among coexisting species from different functional groups by injecting ¹⁵N into soils around the study species three times during the growing season, at two soil depths and as two chemical forms. A watering treatment also was applied to evaluate the impact of soil water content on N partitioning. Second, we examined the degree to which native functional groups contributed to invasion resistance by seeding a non-native annual grass into plots where bunchgrasses, perennial forbs or annual forbs had been removed. Bunchgrasses and forbs differed in timing, depth and chemical form of N capture, and these patterns of N partitioning were not affected by soil water content. However, when we incorporated abundance (biomass) with these relative measures of N capture to determine N sequestration by the community there was no evidence suggesting that functional groups partitioned different soil N pools. Instead, dominant bunchgrasses acquired the most N from all soil N pools. Consistent with these findings we also found that bunchgrasses were the only functional group that inhibited annual grass establishment. At natural levels of species abundance, N partitioning may facilitate coexistence but may not necessarily contribute to N sequestration and invasion resistance by the plant community. This suggests that a general mechanism of invasion resistance may not be expected across systems. Instead, the key mechanism of invasion resistance within a system may depend on trait variation among coexisting species and on how species abundance is distributed in the system.     

A new relictual buthid scorpion from the region of the Great Rift Valley in Kenya (Scorpiones,Buthidae)

A new genus and species of peri-Saharian buthid scorpion is described on the basis of single specimen collected in the Great Rift Valley, North of Kenya. This new scorpion taxon represents yet another endemic relict element for the faunas of the peri-Saharian regions. Comments are also included on the evolution of the Sahara and peri-Saharian regions and its possible consequences on the distribution of the extant scorpion fauna.     

Ecosystem integrity in the Great Lakes Basin: an historical sketch of ideas and actions

The concepts of ecosystem and integrity effectively entered the binational political arena in the Great Lakes Basin in the early 1970's. They were brought together explicitly in the statement of the purpose of the 1978 Great Lakes Water Quality Agreement. The 1987 Protocol to that Agreement has helped to specify the practical meaning of ecosystem integrity of the Great Lakes Basin. The proceedings of a binational workshop in 1988, titled An Ecosystem Approach to the Integrity of the Great Lakes Basin in Turbulent Times, helped to clarify the conceptual meaning. An Ecosystem Charter for the Great Lakes-St. Lawrence River Basin was proposed in 1989 to help achieve more thorough implementation of the commitment to ecosystem integrity. The evolutionary emergence of this political concept and related practice is described in the paper.List of abbreviations used in the text CUSIS Canada-U.S. Inter-University Seminar Series - LAA Environmental Lakes Area - EPA Environmental Protection Agency - GLBC Great Lakes Basin Commission - GLC Great Lakes Commission - GLER Great Lakes Ecosystem Rehabilitation - GLFC Great Lakes Fishery Commission - GLSAB Great Lakes Science Advisory Board - GLU Great Lakes United - GLWQA Great Lakes Water Quality Agreement - HASP Heritage Area Security Plan - IBP International Biological Program - IJC International Joint Commission - IZAP Inundation Zone Adaptive Plan - LAMP Lake-wide Management Plan - LLRS Lake Levels Reference Study - MAB Man and the Biosphere program - NEPA National Environmental Policy Act - PLUARG Pollution from Land Use Activities Reference Group - RAP Remedial Action Plan - SCOL Salmonid Communities in Oligotrophic Lakes - SGLFMP Strategic Great Lakes Fishery Management Plan - SPOF Strategic Plan for Ontario Fisheries - UNESCO United Nations Educational, Scientific and Cultural Organization Aquatic Ecosystem Health and Management Society. Symposium at the University of Waterloo, July 23–25, 1990.     

Draft genome sequence of Caloramator australicus strain RC3T, a thermoanaerobe from the Great Artesian Basin of Australia

Caloramator australicus strain RC3(T) (JCM 15081(T) = KCTC 5601(T)) is the type strain of a newly identified thermophilic species, which was isolated from red microbial mats that thrive at 66°C in the runoff channel of a Great Artesian Basin bore (New Lorne bore, registered number 17263) in outback Queensland, Australia. The ability of the C. australicus strain to use metals as terminal electron acceptors has led to concerns that it could colonize and enhance corrosion of the metal casing of Great Artesian Basin bore well pipes and that this could subsequently lead to bore failure and loss of water availability for the community which is so reliant on it. The genome of the C. australicus strain has been sequenced, and annotation of the ~2.65-Mb sequence indicates that the attributes are consistent with physiological and phenotypic traits.     

Trematodes of the Great Barrier Reef,Australia: emerging patterns of diversity and richness in coral reef fishes

The Great Barrier Reef holds the richest array of marine life found anywhere in Australia, including a diverse and fascinating parasite fauna. Members of one group, the trematodes, occur as sexually mature adult worms in almost all Great Barrier Reef bony fish species. Although the first reports of these parasites were made 100 years ago, the fauna has been studied systematically for only the last 25 years. When the fauna was last reviewed in 1994 there were 94 species known from the Great Barrier Reef and it was predicted that there might be 2,270 in total. There are now 326 species reported for the region, suggesting that we are in a much improved position to make an accurate prediction of true trematode richness. Here we review the current state of knowledge of the fauna and the ways in which our understanding of this fascinating group is changing. Our best estimate of the true richness is now a range, 1,100–1,800 species. However there remains considerable scope for even these figures to be incorrect given that fewer than one-third of the fish species of the region have been examined for trematodes. Our goal is a comprehensive characterisation of this fauna, and we outline what work needs to be done to achieve this and discuss whether this goal is practically achievable or philosophically justifiable.     

Microbiology and geochemistry of great boiling and mud hot springs in the United States Great Basin

A coordinated study of water chemistry, sediment mineralogy, and sediment microbial community was conducted on four >73°C springs in the northwestern Great Basin. Despite generally similar chemistry and mineralogy, springs with short residence time (~5–20 min) were rich in reduced chemistry, whereas springs with long residence time (>1 day) accumulated oxygen and oxidized nitrogen species. The presence of oxygen suggested that aerobic metabolisms prevail in the water and surface sediment. However, Gibbs free energy calculations using empirical chemistry data suggested that several inorganic electron donors were similarly favorable. Analysis of 298 bacterial 16S rDNAs identified 36 species-level phylotypes, 14 of which failed to affiliate with cultivated phyla. Highly represented phylotypes included Thermus, Thermotoga, a member of candidate phylum OP1, and two deeply branching Chloroflexi. The 276 archaeal 16S rDNAs represented 28 phylotypes, most of which were Crenarchaeota unrelated to the Thermoprotei. The most abundant archaeal phylotype was closely related to “Candidatus Nitrosocaldus yellowstonii”, suggesting a role for ammonia oxidation in primary production; however, few other phylotypes could be linked with energy calculations because phylotypes were either related to chemoorganotrophs or were unrelated to known organisms. Electronic supplementary material  The online version of this article (doi:) contains supplementary material, which is available to authorized users.     

Independent colonization and extensive cryptic speciation of freshwater amphipods in the isolated groundwater springs of Australia's Great Artesian Basin

The groundwater-dependent springs of the Great Artesian Basin (GAB) in arid inland Australia represent a unique and threatened ecosystem. These incredibly isolated springs support a diverse array of endemic flora and fauna. One of the common faunal groups in the GAB springs is the freshwater amphipods of the family Chiltoniidae. The morphological conservatism and taxonomic uncertainty associated with these amphipods has ensured their true biodiversity, phylogeographical history and evolutionary affinities have remained unknown. We have used mitochondrial DNA and allozyme data to unravel a complicated history of isolation, extinction and dispersal among spring amphipod populations across the GAB. The results provide evidence for multiple independent colonizations in the GAB springs, particularly within the Lake Eyre group of springs. The inclusion of a group of Western Australian (WA) stygobitic amphipods from populations up to 1500 km away found surprising evidence for a shared evolutionary history between stygobitic and GAB spring amphipods. Approximate dating of the diversity found between major clades suggests the majority of lineages originated in the late Miocene, around the time of the aridification of inland Australia. The large number of independent lineages and the close connection between GAB spring and WA stygobitic amphipods suggest that a significantly rich amphipod fauna existed in the much wetter environment that once existed in inland Australia. The results also provide evidence for a gross underestimation of the species diversity within the springs, with 12 putative species identified, a conclusion with significant implications for the ongoing conservation of the GAB springs.     

The effect of a single burn event on the aquatic invertebrates in artesian springs

Fire can often occur in aquatic ecosystems, which may affect aquatic invertebrates. Despite the importance of aquatic invertebrates to ecosystem function, the effect of fire on these environments has been little studied. We studied the effects of fire on aquatic invertebrates in artesian springs in the arid zone of South Australia. Artesian springs are a unique and threatened ecosystem, containing several rare and endemic species. Evidence suggests these wetlands were routinely burnt by indigenous Aboriginal people before European settlement over 100 years ago. Recently, burning has been suggested as a reinstated management tool to control the dominant reed Phragmites australis. A reduction in the cover of the reed may benefit the threatened flora and fauna through enhancement of water flow. Three artesian springs were burnt and aquatic invertebrates sampled from the burnt and three unburnt springs. A single fire in late winter completely burnt the dominant vegetation, followed by recovery of Phragmites over the following 2 years. A single fire event did not deplete populations of endemic aquatic invertebrates in artesian springs, but probably did not substantially benefit these populations either. Isopods, amphipods, ostracods and three species of hydrobiid snail survived the fire event, and most had increased in number 1 month post fire but then returned to pre‐burnt numbers by 1 year post fire. Morphospecies richness of all identified invertebrates increased over time in all springs, but did not differ appreciably between burnt and unburnt springs. If burning artesian springs is to be adopted as a management tool to suppress the growth of Phragmites australis, we conclude that the endemic aquatic invertebrates will survive a single burn event, without negative effect to their populations.