Dichloromethane as the sole carbon source forHyphomicrobium sp. strain DM2 under denitrification conditions

Hyphomicrobium sp. strain DM2 was found to grow anaerobically in the presence of nitrate with methanol, formaldehyde, formate or dichloromethane. The estimated growth rate constants with methanol and dichloromethane under denitrification conditions were 0.04 h^–1 and 0.015 h^–1, respectively, which is twofold and fourfold lower than the rates of aerobic growth with these substrates. Slight accumulation of nitrite was observed in all cultures grown anaerobically with nitrate. Dichloromethane dehalogenase, the key enzyme in the utilization of this carbon source, was induced under denitrification conditions to the same specific activity level as under aerobic conditions. In a fed batch culture under denitrification conditionsHyphomicrobium sp. DM2 cumulatively degraded 35 mM dichloromethane within 24 days. This corresponds to a volumetric degradation rate of 5 mg dichloromethane/l·h and demonstrates that denitrificative degradation offers an attractive possibility for the development of anaerobic treatment systems to remove dichloromethane from contaminated groundwater.     

Isolation of a Xanthobacter sp. degrading dichloromethane and characterization of the gene involved in the degradation

A bacterial strain able to degrade dichloromethane (DCM) as the sole carbon source was isolated from a wastewater treatment plant receiving domestic and pharmaceutical effluent. 16S rDNA studies revealed the strain to be a Xanthobacter sp. (strain TM1). The new isolated strain when grown aerobically on DCM showed Luong type growth kinetics, with μ_max of 0.094 h⁻¹ and S _m of 1,435 mg l⁻¹. Strain TM1 was able to degrade other aromatic and aliphatic halogenated compounds, such as halobenzoates, 2-chloroethanol and dichloroethane. The gene for DCM dehalogenase, which is the key enzyme in DCM degradation, was amplified through PCR reactions. Strain TM1 contains type A DCM dehalogenase (dcmAa), while no product could be obtained for type B dehalogense (dcmAb). The sequence was compared against 12 dcmAa from other DCM degrading strains and 98% or 99% similarity was observed with all other previously isolated DCM dehalogenase genes. This is the first time a Xanthobacter sp. is reported to degrade DCM.     

Isolation of a dimethylsulfide-utilizingHyphomicrobium species and its application in biofiltration of polluted air

The methylotrophic bacteriumHyphomicrobium VS was enriched and isolated, using activated sewage sludge as inoculum in mineral medium containing dimethylsulfide (DMS) at a low concentration to prevent toxicity. DMS concentrations above 1 mM proved to be growth inhibiting.Hyphomicrobium VS could use DMS, dimethylsulfoxide (DMSO), methanol, formaldehyde, formate, and methylated amines as carbon and energy source. Carbon was assimilated via the serine pathway. DMS-grown cells respired sulfide, thiosulfate, methanethiol, dimethyldisulfide and dimethyltrisulfide.To testHyphomicrobium VS for application in biofiltration of air polluted with volatile sulfur compounds two laboratory scale trickling biofilters with polyurethane and lava stone as carrier material were started up by inoculation with this bacterium. Both methanol- and DMS-grown cells could be used. Only a short adaptation period was needed. Short term experiments showed that high concentrations of DMS (1–2 µmol 1^–1) were removed very efficiently by the biofilters at space velocities up to 100 h^–1.Abbreviations VSC volatile sulfur compounds - DMS dimethylsulfide - DMDS dimethyldisulfide - DMTS dimethyltrisulfide - MT methanethiol - DMSO dimethylsulfoxide     

Dehalogenation of dichloromethane by cell extracts of hyphomicrobium DM2

A facultatively methylotrophic bacterium was isolated from enrichment cultures containing dichloromethane as the sole carbon source. It was identified as a Hyphomicrobium species. The organism grew exponentially in batch cultures with 10 mM dichloromethane at a specific growth rate of 0.07 h^-1. The release of Cl^- from dichloromethane and the disapperance of substrate paralleled growth. Resting dichloromethane-grown cells, in the presence of potassium sulphite as a trapping agent, converted cichloromethane methane quantitatively to formaldehyde. The conversion of dichloromethane to formaldehyde by cell extracts was stricly dependent on glutathione. Other thiols were inactive. Glutathione was not consumed in the course of the reaction. The specific activity of the enzymic dehalogenation of dichloromethane amounted to 3.8 mkat/kg protein in extracts of dichloromethane-grown cells and to less than 0.1 mkat/kg protein in extracts from cells grown on methanol.     

Kinetic studies of phenol degradation by Rhodococcus sp. P1 II. Continuous cultivation

The degradation of phenol by Rhodococcus sp. P1 was studied in continuous culture systems. The organism could be adapted by slowly increasing concentration, step by step, up to 30.0 g · 1^-1 phenol in the influent. The degradation rate reached values of about 0.3 g · g dry mass^-1 ·h^-1. Large step increases in phenol concentration and addition of further substrates (e.g., catechol) were tolerated up to a certain concentration. With increasing dilution rate and increasing inlet phenol concentration the stability of the system decreased.     

The effect of NaCl on proline accumulation in rice leaves

The regulation of proline accumulation in detached leaves of rice(Oryza sativa cv. Taichung Native 1) was investigated.Increasing concentrations of NaCl from 50 to 200 mM progressivelyincreased proline content in detached rice leaves. NaCl induced prolineaccumulation was mainly due to the effect of both Na⁺ andCl^– ions. Proline accumulation caused by NaCl was related toprotein proteolysis, an increase in ornithine--aminotransferaseactivity,a decrease in proline dehydrogenase activity, a decrease in prolineutilisation,and an increase in the content of the precursors of proline biosynthesis,ornithine and arginine. Results also show that proline accumulation caused byNaCl was associated with ammonium ion accumulation.     

trans-Stilbene degradation by Arthrobacter sp. SL3 cells

trans-Stilbene degradation was examined by the reaction using resting cells of microorganisms isolated through the enrichment culture using trans-stilbene. The strain SL3, showing the highest trans-stilbene-degrading activity, was identified as Arthrobacter sp. One of the reaction products was identified to be cis,cis-muconic acid. Arthrobacter sp. SL3 cells also transformed benzaldehyde, benzoic acid and catechol into cis,cis-muconic acid, suggesting that one benzene ring of trans-stilbene was converted into cis,cis-muconic acid via benzaldehyde formed by its C_α=C_β bond cleavage.     

Continuous culture and synchronization ofHyphomicrobium sp. B-522

A technique was developed for synchronization ofHyphomicrobium sp. strain B-522. Bacteria were grown in continuous culture with methanol (0.1%; v/v) growth limiting. Vitamin B₁₂ (2.5 g/l) was necessary to obtain steady state growth. The critical dilution rate wasD _c =0.112; maximum cell output occurred atD=0.105 (Dx=30 mg l^-1 h^-1). Continuous cultures ofHyphomicrobium B-522 atD=0.110 were used to obtain cells for synchronization experiments. Synchronization was achieved by trapping young hyphal and budding cells in a glass wool column, while the initial swarmer cells were allowed to pass through. By semicontinuously rinsing the system, newly produced swarmers could be sampled in the effluent. The mean length of these synchronous swarmer cells was 1.25 m (s=±0.13 m; range 0,6 m) as compared to 1.40 m (s=±0.21 m; range 1.2 m) for swarmer cells of the continuous culture. Division of synchronous swarmer populations was completed after 7 h; the synchronization index was 0.76.     

NaCl处理对西伯利亚白刺幼苗生长及离子平衡的影响

以1年生西伯利亚白刺水培幼苗为材料,研究了不同浓度NaCl(0、200、400mmol·L~(-1))处理对幼苗生长及不同器官(根、茎、叶)中Na~+、K~+、Ca~(2+)、Mg~(2+)的吸收、运输与分配的影响,探讨西伯利亚白刺的盐适应机制。结果表明:(1)200mmol·L~(-1) NaCl处理促进了西伯利亚白刺幼苗的生长及叶片肉质化程度,400mmol·L-1 NaCl处理显著抑制其生长。(2)随着NaCl处理浓度的升高,西伯利亚白刺幼苗根、茎、叶中Na~+含量显著增加,且叶中Na~+含量显著高于茎和根中;根系中K~+含量显著增加;根、茎、叶中Ca~(2+)、Mg~(2+)含量在200mmol·L~(-1) NaCl处理下保持平稳或上升,而在400mmol·L-1 NaCl处理下显著下降。(3)各器官中K~+/Na~+、Ca~(2+)/Na~+和Mg~(2+)/Na~+比值总体随NaCl处理浓度的升高呈下降趋势,且根部离子比值始终高于叶片和茎。(4)随着NaCl处理浓度的升高,西伯利亚白刺幼苗根-茎SK,Na显著下降,而根-茎SCa,Na、SMg,Na及茎-叶SK,Na、SCa,Na、SMg,Na逐渐提高。研究发现,西伯利亚白刺的盐适应机制主要是通过植株的补偿生长效应及叶片对Na~+的聚积作用实现的,同时也与根系对K~+的扣留及茎叶对K~+、Ca~(2+)、Mg~(2+)选择性运输能力增强有关。     

Genetics and biochemistry of phenol degradation byPseudomonas sp. CF600

Pseudomonas sp. strain CF600 is an efficient degrader of phenol and methylsubstituted phenols. These compounds are degraded by the set of enzymes encoded by the plasmid locateddmpoperon. The sequences of all the fifteen structural genes required to encode the nine enzymes of the catabolic pathway have been determined and the corresponding proteins have been purified. In this review the interplay between the genetic analysis and biochemical characterisation of the catabolic pathway is emphasised. The first step in the pathway, the conversion of phenol to catechol, is catalysed by a novel multicomponent phenol hydroxylase. Here we summarise similarities of this enzyme with other multicomponent oxygenases, particularly methane monooxygenase (EC 1.14.13.25). The other enzymes encoded by the operon are those of the well-knownmeta-cleavage pathway for catechol, and include the recently discoveredmeta-pathway enzyme aldehyde dehydrogenase (acylating) (EC 1.2.1.10). The known properties of thesemeta-pathway enzymes, and isofunctional enzymes from other aromatic degraders, are summarised. Analysis of the sequences of the pathway proteins, many of which are unique to themeta-pathway, suggests new approaches to the study of these generally little-characterised enzymes. Furthermore, biochemical studies of some of these enzymes suggest that physical associations betweenmeta-pathway enzymes play an important role. In addition to the pathway enzymes, the specific regulator of phenol catabolism, DmpR, and its relationship to the XylR regulator of toluene and xylene catabolism is discussed.     

A covert contaminant of cultured plant cells: elimination of a Hyphomicrobium sp. from cultures of Datura innoxia (Mill.)

We have discovered a bacterial contaminant in some cell cultures of Datura innoxia (Mill.). The bacterium was tentatively identified as a species of Hyphomicrobium on the basis of its morphology and life cycle, and was isolated and grown in pure culture on a defined medium. The contaminant was not macroscopically observable in plant cell cultures. It caused neither a reduction of plant cell growth nor a noticeable increase in culture turbidity. Furthermore, it was not readily detectable by many standard assays for culture contamination: it would not grow alone in plant culture medium or yeast extract potato dextrose medium, and grew only very slowly on nutrient agar or beef-peptone medium. Repeated treatments with a combination of streptomycin (100 g/ml) and carbenicillin (100 g/ml) eliminated the contaminant from D. innoxia cell cultures without harming the plant cells.     

NaCl胁迫对5个桂花品种叶片超微结构的影响

该研究以5个桂花品种为材料,以Hoagland培养液为对照,设计2个NaCl含量(70、100 mmol/L)处理10 d后利用透射电镜和扫描电镜观察各处理不同品种的叶片超微结构特征,以明确桂花品种对耐NaCl胁迫的解剖结构响应机制。结果显示：(1)透射电镜观察发现：随NaCl 胁迫程度的加强,5个桂花品种叶肉细胞中叶绿体结构受到不同程度地破坏;70 mmol/L NaCl处理后,5个品种的细胞核基本保持正常,而100 mmol/L NaCl处理后核内染色质发生降解;随着NaCl胁迫程度的加强,5个桂花品种的类囊体片层结构中嗜锇颗粒明显增多;在膜结构方面,大叶银桂的叶肉细胞被破坏程度最为严重,叶绿体膜被破坏,叶绿体形状基本不能辨认。(2)扫描电镜观察结果显示：随着NaCl浓度的增大,5个品种叶片表面的气孔密度不断增大,而张开气孔的密度却不断减小,且叶肉细胞体积均缩小;‘大叶银桂’、‘笑秋风’、‘晚籽银桂’的栅栏组织占叶厚的比重随NaCl胁迫浓度的增大而升高,‘潢川金桂’和‘紫梗籽银桂’的栅栏组织占叶厚的比重则随NaCl胁迫浓度的增大而呈先升高后降低的趋势。研究表明,NaCl胁迫对桂花叶片细胞叶绿体、细胞核等的超微结构会造成损伤,且NaCl胁迫浓度越高损伤越明显。该试验可初步判断‘大叶银桂’、‘笑秋风’、‘晚籽银桂’的耐盐性略高于‘潢川金桂’和‘紫梗籽银桂’。     

Rhodococcus sp. strain TM1 plays a synergistic role in the degradation of piperidine by Mycobacterium sp. strain THO100

Mycobacterium sp. strain THO100 and Rhodococcus sp. strain TM1 were isolated from a morpholine-containing enrichment culture of activated sewage sludge. Strain THO100, but not strain TM1, was able to degrade alicyclic amines such as morpholine, piperidine, and pyrrolidine. The mixed strains THO100 and TM1 showed a better growth on piperidine as the substrate than the pure strain THO100 because strain TM1 was able to reduce the level of glutaraldehyde (GA) produced during piperidine degradation. GA was toxic to strain THO100 (IC₅₀ = 28.3 μM) but less toxic to strain TM1 (IC₅₀ = 215 μM). Strain THO100 possessed constitutive semialdehyde dehydrogenases, namely Sad1 and Sad2, whose activities toward succinic semialdehyde (SSA) were strongly inhibited by GA. The two isozymes were identified as catalase–peroxidase (KatG = Sad1) and semialdehyde dehydrogenase (Sad2) based on mass spectrometric analyses of tryptic peptides and database searches of the partial DNA sequences of their genes. In contrast, strain TM1 containing another constitutive enzyme Gad1 could oxidize both SSA and GA. This study suggested that strain TM1 possessing Gad1 played a synergistic role in reducing the toxic and inhibitory effects of GA produced in the degradation of piperidine by strain THO100.     

The influence of culture conditions on mycorrhiza formation between the ectomycorrhizal fungus Pisolithus sp. and Afzelia africana Sm. seedlings

Interactions between an isolate of the ectomycorrhizal fungus Pisolithus sp. and Afzelia africana Sm. seedlings were studied at the structural and ultrastructural levels. Several different conditions were tested with or without sugar and in a sterile or nonsterile medium. In the growth cabinet, the A. africana/Pisolithus sp. interactions did not produce ectomycorrhizas. A fungal sheath was formed but no Hartig net, and an unusual host epidermal cell wall was observed. Hyphae of Pisolithus sp. induced modifications of epidermal cells of 15-day-old A. africana seedlings indicative of non-mycorrhizal interactions, such as wall thickening, wall ingrowth, papillae formation, degraded host wall material and the presence of intracellular hyphae. Wall ingrowth consisted of depositions of host cell wall materials giving a positive reaction for polysaccharides; however, wall thickenings and papillae showed no homogeneous reactions for polysaccharides. In glasshouse conditions, inocula of Pisolithus sp. in the form of spores or mycelia entrapped in peat-vermiculite added to sterilized soil produced typical ectomycorrhizae only with 6-month-old A. africana seedlings. Under these conditions, no conspicuous cell wall reactions occurred on A. africana roots. The results demonstrate that the establishment of an association between an ectomycorrhizal fungus and a potential host plant is strongly influenced by seedling age and/or environmental conditions. Therefore, in vitro synthesis is not a conclusive demonstration of a symbiotic relationship.     

Effects of NaCl and KNO3 concentrations on the abscisic acid content of Dunaliella sp. (Chlorophyta)

Abscisic acid (ABA) is a hormone which has a number of roles during the life cycle of a plant. We demonstrated the occurrence of ABA in a halotolerant green alga, Dunaliella sp. isolated from a salt pond near Adelaide, South Australia, using thin layer chromatography (TLC), high performance liquid chromatography (HPLC) and gas chromatography-mass spectrometry (GC-MS). The variation of cellular ABA and protein content during the growth of an axenic clonal culture of Dunaliella sp. was investigated under different concentrations of NaCl and KNO₃.Experimental results can be summarized as follow: (1) ABA content was changed with the growth stage of culture: A rapid increase in ABA content was observed in the logarithmic phase. After this, the content rapidly decreased to very low values. (2) ABA content was also affected by the NaCl concentration. The content had a minimum value at the NaCl concentration (15%) where growth rate was maximal, and higher values at higher or lower concentrations of NaCl. (3) The ABA content also increased with decreasing nitrogen concentration of the medium.     

NaCl胁迫对宁夏枸杞叶和幼根显微及超微结构的影响

以宁夏枸杞为材料,采用超薄切片技术制备样品,应用光学显微镜和透射电镜分析了不同浓度NaCl胁迫条件下宁夏枸杞叶和幼根显微及超微结构的变化.结果表明:随着NaCl胁迫的加重,(1)叶片上表皮细胞增厚,栅栏组织细胞出现缩短现象,排列疏松且紊乱;幼根的初生结构无明显变化.(2)叶片栅栏组织中叶绿体不再紧靠在细胞膜上,叶绿体双...     

Carbonic anhydrase activity of Prochloron sp. isolated from an ascidian host

The prokaryotic algal symbiont of ascidians, Prochloron sp., was found to exhibit carbonic anhydrase activity which is largely associated with the cell surface. This extracellular carbonic anhydrase activity was inhibited, while the intracellular activity was not affected, by chloride or bromide. Acetazolamide and ethoxyzolamide inhibited carbonic anhydrase activity with I₅₀ values of 7×10^-4 and 3×10^-4M, respectively. These I₅₀ values are similar to those observed for intracellular carbonic anhydrases of Synechococcus sp. PCC7942, Chlamydomonas reinhardii and spinach.Abbreviations AZA acetazolamide - CA carbonic anhydrase - chl chlorophyll - EZA ethozyzolamide - I₅₀ concentration of an inhibitor required to cause 50% inhibition - Rubisco ribulose-1,5-bisphosphate carboxylase/oxygenase - U unit     

The effect of short term withdrawal of NaCl stress on nodulation of white clover

The number of nodules formed by white clover (Trifolium repens L.) released from NaCl stress for 3 days (137 mol m^-3) at different periods was examined. The NaCl stress-free periods were, 0 to 3 days prior to rhizobial inoculation, 0 to 3, 3 to 6, and 6 to 9 days after rhizobial inoculation. Plants not subjected to NaCl stress at 0 to 3 days after inoculation had 28.7 nodules per plant (74% of control), while plants continuously stressed had 5.2 nodules (13% of control). A NaCl stress-free period immediately after inoculation was the best among the stressed treatments, indicating that the early stage of nodulation was more sensitive than the later stages. Microscopic observation showed that imposing NaCl stress during the first 3 days after inoculation suppressed root hair curling to 9.1% of control, while the numbers of rhizobia attached to roots counted by dilution plates were not affected. Thus, there were no significant effects of NaCl stress on rhizobia. The sensitivity of the early stage of infection to NaCl stress was attributed to the inhibition of root hair curling.     

NaCl胁迫对秋茄幼苗根系抗氧化系统的影响

为探讨红树植物秋茄(Kandelia candel)幼苗根系抗氧化系统对盐胁迫的生理响应,以Hoagland完全营养液沙培秋茄幼苗60 d后,用不同浓度NaCl处理秋茄根系1、3、5、7 d,对其生理生化指标的变化进行研究。结果表明,胁迫相同天数,200和400 mmol L~(-1) NaCl处理的秋茄根系O_2~(-·)和H_2O_2含量保持较低水平,而600 mmol L~(-1) NaCl处理的则明显增加;MDA含量在200和400 mmol L~(-1) NaCl处理下保持稳定,而600 mmol L~(-1) NaCl处理的显著升高;SOD、POD、CAT、APX和GR活性随NaCl浓度升高总体上表现先上升后下降的趋势,处理3和5 d后的酶活性均显著高于对照,而600 mmol L~(-1) NaCl处理7 d后的酶活性明显低于对照;AsA和GSH含量总体上均明显高于对照。因此,秋茄幼苗是通过根系功能较强的抗氧化系统清除活性氧以提高植株的耐盐性。