Expression of the 2-5A system during the cell cycle

To determine whether the 2-5A system has a role in the regulation of cell growth we have examined all constituents of the 2-5A pathway in mouse embryo fibroblasts undergoing one cycle of division at the tertiary stage under conditions where a high degree of uniformity is maintained within each stage of the cycle. Levels of the 2-5A synthetase increased up to tenfold late in S phase and declined as cells moved through G2. A similar but smaller increase in the 2-5A-dependent ribonuclease was observed, whereas activity of the 2'5' phosphodiesterase was highest in quiescent cells. At the time of maximum synthetase levels no phosphorylated 2-5A could be detected in the intact cell. Endogenous interferon (IFN) was found in the culture supernatants in increasing concentration with cell cycle progression and addition of antibodies to IFN reduced the increase in synthetase seen in late S. Treatment of cells with a growth inhibitor that cells produce also affected synthetase activity.     

The dendritic cell life cycle

Dendritic cells (DCs) are a special class of leukocytes actively involved in initiating innate and adaptive immune responses against invading pathogens. They play a fundamental role in determining both the type and efficiency of adaptive immune reactions. In particular, the efficiency of adaptive responses is strictly correlated with the survival of the DCs that have encountered the antigen. In physiological conditions, the rapid death of DCs by apoptosis after an encounter with a microbe is important, to prevent both aberrant activation and autoimmunity. The mechanism leading to DC apoptosis after exposure to lipopolysaccharide (LPS) was recently elucidated, with activation of the c2 and c3 isoforms of nuclear factor of activated T cells (NFAT) playing a particularly important role in this process. In particular, the exposure of DCs to LPS induces the activation of Src-family kinases and phospholipase C (PLC)γ2, the influx of extracellular Ca2+ and calcineurin-dependent nuclear NFAT translocation. The initiation of this pathway is independent of TLR4 engagement and depends exclusively on CD14. We also consider here the possible role of CD14 in initiating this pathway and the way in which the c2 and c3 isoforms of NFAT exert their pro-apoptotic effects.     

A novel medium for the development of in vitro cell culture system from Penaeus monodon

Lack of a valid shrimp cell line has been hampering the progress of research on shrimp viruses. One of the reasons identified was the absence of an appropriate medium which would satisfy the requirements of the cells in vitro. We report the first attempt to formulate an exclusive shrimp cell culture medium (SCCM) based on the haemolymph components of Penaeus monodon prepared in isosmotic seawater having 27 ‰ salinity. The SCCM is composed of 22 amino acids, 4 sugars, 6 vitamins, cholesterol, FBS, phenol red, three antibiotics, potassium dihydrogen phosphate and di-sodium hydrogen phosphate at pH 6.8–7.2. Osmolality was adjusted to 720 ± 10 mOsm kg⁻¹ and temperature of incubation was 25 ºC. The most appropriate composition was finally selected based on the extent of attachment of cells and their proliferation by visual observation. Metabolic activity of cultured cells was measured by MTT assay and compared with that in L-15 (2×), modified L-15 and Grace’s insect medium, and found better performance in SCCM especially for lymphoid cells with 107 % increase in activity and 85 ± 9 days of longevity. The cells from ovary and lymphoid organs were passaged twice using the newly designed shrimp cell dissociation “cocktail”.     

Studies on the vegetative life cycle of Chlamydomonas reinhardi Dangeard in synchronous culture I. Some characteristics of the cell cycle

Cells of Chlamydomonas reinhardi Dangeard were grown synchronouslyunder a 12 hr light-12 hr dark regime. Time courses of nucleardivision, chloroplast division, "apparent cytokinesis" and zoosporeliberation were followed during the vegetative cell cycle inthe synchronous culture. Liberation of zoospores occurred atabout 23–24 hr after the beginning of the light periodat 25°C. Four zoospores were produced per mother cell underthe conditions used. At lower temperatures, the process of zoosporeliberation as well as length of the cell cycle was markedlyprolonged, but the number of zoospores produced per mother cellwas approximately the same. At different light intensities,lengths of the cell cycle were virtually the same, while thenumber of zoospores liberated was larger at higher rather thanat lower light intensities. During the dark period, nuclear division, chloroplast divisionand apparent cytokinesis took place, in diis order, and proceededless synchronously than did the process of zoospore liberation.When the 12 hr dark period was replaced with a 12 hr light periodduring one cycle, the time of initiation as well as the durationof zoospore liberation was litde affected in most cases, whereasnuclear division, chloroplast division and apparent cytokinesiswere considerably accelerated by extended illumination. Whenalgal cells which had been exposed to light for 24 hr were furtherincubated in the light, zoospore liberation started much earlierand proceeded far less synchronously, compared with that under12 hr light-12 hr dark alternation. (Received October 12, 1970; )     

Moving from completing system boundaries to more realistic modeling of the economy in life cycle assessment

The International Journal of Life Cycle Assessment - Existing process-based life cycle assessment (LCA) models can be supplemented by input-output (IO) models to correct for the so-called...     

A system boundary identification method for life cycle assessment

Purpose

Life cycle assessment (LCA) is a useful tool for quantifying the overall environmental impacts of a product, process, or service. The scientific scope and boundary definition are important to ensure the accuracy of LCA results. Defining the boundary in LCA is difficult and there are no commonly accepted scientific methods yet. The objective of this research is to present a comprehensive discussion of system boundaries in LCA and to develop an appropriate boundary delimitation method.

Methods

A product system is partitioned into the primary system and interrelated subsystems. The hierarchical relationship of flow and process is clarified by introducing flow- and process-related interventions. A system boundary curve model of the LCA is developed and the threshold rules for judging whether the system boundary satisfies the research requirement are proposed. Quantitative criteria from environmental, technical, geographical and temporal dimensions are presented to limit the boundaries of LCA. An algorithm is developed to identify an appropriate boundary by searching the process tree and evaluating the environmental impact contribution of each process while it is added into the studied system.

Results and discussion

The difference between a limited system and a theoretically complete system is presented. A case study is conducted on a color TV set to demonstrate and validate the method of boundary identification. The results showed that the overall environmental impact indicator exhibits a slow growth after a certain number of processes considered, and the gradient of the fitting curve trends to zero gradually. According to the threshold rules, a relatively accurate system boundary could be obtained.

Conclusions

It is found from this research that the system boundary curve describes the growth of life cycle impact assessment (LCIA) results as processes are added. The two threshold rules and identification methods presented can be used to identify system boundary of LCA. The case study demonstrated that the methodology presented in this paper is an effective tool for the boundary identification.     

A novel CDC25A/DYRK2 regulatory switch modulates cell cycle and survival

The cell division cycle 25A (CDC25A) phosphatase is a key regulator of cell cycle progression that acts on the phosphorylation status of Cyclin–Cyclin-dependent kinase complexes, with an emergent role in the DNA damage response and cell survival control. The regulation of CDC25A activity and its protein level is essential to control the cell cycle and maintain genomic integrity. Here we describe a novel ubiquitin/proteasome-mediated pathway negatively regulating CDC25A stability, dependent on its phosphorylation by the serine/threonine kinase DYRK2. DYRK2 phosphorylates CDC25A on at least 7 residues, resulting in its degradation independent of the known CDC25A E3 ubiquitin ligases. CDC25A in turn is able to control the phosphorylation of DYRK2 at several residues outside from its activation loop, thus affecting DYRK2 localization and activity. An inverse correlation between DYRK2 and CDC25A protein amounts was observed during cell cycle progression and in response to DNA damage, with CDC25A accumulation responding to the manipulation of DYRK2 levels or activity in either physiological scenario. Functional data show that the pro-survival activity of CDC25A and the pro-apoptotic activity of DYRK2 could be partly explained by the mutual regulation between both proteins. Moreover, DYRK2 modulation of CDC25A expression and/or activity contributes to the DYRK2 role in cell cycle regulation. Altogether, we provide evidence suggesting that DYRK2 and CDC25A mutually control their activity and stability by a feedback regulatory loop, with a relevant effect on the genotoxic stress pathway, apoptosis, and cell cycle regulation.Subject terms: Proteins, Cell biology, Proteomics     

CycleTrak: a novel system for the semi-automated analysis of cell cycle dynamics

Cell proliferation is crucial to tissue growth and form during embryogenesis, yet dynamic tracking of cell cycle progression and cell position presents a challenging roadblock. We have developed a fluorescent cell cycle indicator and single cell analysis method, called CycleTrak, which allows for better spatiotemporal resolution and quantification of cell cycle phase and cell position than current methods. Our method was developed on the basis of the existing Fucci method. CycleTrak uses a single lentiviral vector that integrates mKO2-hCdt1 (30/120), and a nuclear-localized eGFP reporter. The single vector and nuclear localized fluorescence signals simplify delivery into cells and allow for rapid, automated cell tracking and cell cycle phase readout in single and subpopulations of cells. We validated CycleTrak performance in metastatic melanoma cells and identified novel cell cycle dynamics in vitro and in vivo after transplantation and 3D confocal time-lapse imaging in a living chick embryo.     

Dynamics and the life cycle of cell microtubules

In living cells microtubules (MTs) continuously grow and shorten. This feature of MTs was discovered in vitro and named dynamic instability. Comparison of dynamic instability of MTs in vitro and in vivo shows a number of differences. MTs in vivo rapidly grow (up to 20 microns/min), duration of their shortening is small (on average 15-20 s), and pauses are prominent. In different animal cells MTs grow from the centrosome and form a radial array. In such cells growth of MTs is persistent, i.e. undergo without interruptions until plus end of a MT reaches cell margin. Analysis of literature and original data shows that interconvertion between phases of growth, shortening and pause is asymmetric: growth often converts into pause, while shortening always converts into growth without pause. We suggest dynamic instability described near the cell margin in numerous publications results not only from intrinsic properties of MTs, but also because of the external obstacles for their growth. MT behavior in the cells with radial array of long MTs could be treated as dynamic instability with boundary conditions. One boundary is the centrosome responsible for rapid initiation of MT growth. Another boundary is cell margin limiting MT elongation. MT growth occurs with constant mean velocity, and potential duration of growth phase might exceed cell radius. MT shortening is usually smaller than MT length however velocity of shortening increases with time. Random episodes of rapid shortening are sufficient for the exchange of MTs in 10-20 min in the cells not more than 40-50 microns in diameter. Experimental data show that similar rate of exchange of MTs is in the large cells. This is achieved employing another mechanism, namely release of MTs and depolymerization from the minus end. In the minus end pathway time required for the exchange of MTs does not depend on cell radius and is determined primarily by the frequency of releases. Thus a small number of free MTs with metastable minus ends significantly reduce time required for the renovation of the radial MT array. Summarizing all experimental data we suggest the life cycle scheme for the MT in a cell. MT is initiated at the centrosome and grows rapidly until it reaches cell margin. At the margin the plus end oscillates, and finally MT depolimerizes. MT "death" comes from a random catastrophe (shortening from the plus end) in small cells or from release and depolymerization of the minus end in large cells.     

A novel ascaroside controls the parasitic life cycle of the entomopathogenic nematode Heterorhabditis bacteriophora

Entomopathogenic nematodes survive in the soil as stress-resistant infective juveniles that seek out and infect insect hosts. Upon sensing internal host cues, the infective juveniles regurgitate bacterial pathogens from their gut that ultimately kill the host. Inside the host, the nematode develops into a reproductive adult and multiplies until unknown cues trigger the accumulation of infective juveniles. Here, we show that the entomopathogenic nematode Heterorhabditis bacteriophora uses a small-molecule pheromone to control infective juvenile development. The pheromone is structurally related to the dauer pheromone ascarosides that the free-living nematode Caenorhabditis elegans uses to control its development. However, none of the C. elegans ascarosides are effective in H. bacteriophora, suggesting that there is a high degree of species specificity. Our report is the first to show that ascarosides are important regulators of development in a parasitic nematode species. An understanding of chemical signaling in parasitic nematodes may enable the development of chemical tools to control these species.     

A tool for modeling strategic decisions in cell culture manufacturing

The development of a prototype tool for modeling manufacturing in a biopharmaceutical plant is discussed. A hierarchical approach to modeling a manufacturing process has been adopted to confer maximum user flexibility. The use of this framework for assessing the impact of manufacturing decisions on strategic technical and business indicators is demonstrated via a case study. In the case study, which takes the example of a mammalian cell culture process delivering a therapeutic for clinical trials, the dynamic modeling tool indicates how manufacturing options affect the demands on resources and the associated manufacturing costs. The example illustrates how the decision-support software can be used by biopharmaceutical companies to investigate the effects of working toward different strategic goals on the cost-effectiveness of the process, prior to committing to a particular option.     

Drugs targeting various stages of the SARS-CoV-2 life cycle: Exploring promising drugs for the treatment of Covid-19

The severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is a positive-sense, single-stranded RNA virus that causes the potentially lethal Covid-19 respiratory tract infection. It does so by binding to host cell angiotensin converting enzyme 2 (ACE2) receptors, leading to endocytosis with the receptor, and subsequently using the host cell’s machinery to replicate copies of itself and invade new cells. The extent of the spread of infection in the body is dependent on the pattern of ACE2 expression and overreaction of the immune system. Additionally, by inducing an imbalance in the renin-angiotensin-aldosterone system (RAAS) and the loss of ACE2 would favour the progression of inflammatory and thrombotic processes in the lungs. No drug or vaccine has yet been approved to treat human coronaviruses. Hundreds of clinical trials on existing approved drugs from different classes acting on a multitude of targets in the virus life cycle are ongoing to examine potential effectiveness for the prevention and treatment of the infection. This review summarizes the SARS-CoV-2 virus life cycle in the host cell and provides a biological and pathological point of view for repurposed and experimental drugs for this novel coronavirus. The viral life cycle provides potential targets for drug therapy.