Reproductive success and effective population size in woodrats (Neotoma macrotis)

Discrepancies between the census size and the genetically effective size of populations (N(e)) can be caused by a number of behavioural and demographic factors operating within populations. Specifically, strong skew in male reproductive success, as would be expected in a polygynous mating system, could cause a substantial decrease in N(e) relative to census size. Because the mating system of Neotoma macrotis had previously been described as one nearing harem polygyny, I examined the distribution of reproductive success and genetic variation within a population of this species. Combining genetic data and three years of field observations, I show that variance in reproductive success does not deviate from poisson expectations within either sex and variance in success is similar between the sexes. Furthermore, both males and females had multiple partners across litters in addition to some evidence of multiple paternity within litters. Despite a lack of strong skew in reproductive success, an estimate of N(e) based on a number of demographic parameters suggests that the ratio of N(e)/N in this population is 0.48. Although the ratio of N(e)/N suggests that the population is experiencing higher rates of genetic drift than would be expected based on census size alone, the population maintains high levels of genetic diversity. Estimates of neighbourhood size and patterns of recruitment to the study site suggest that immigration plays an important role in this population and may contribute to the maintenance of high levels of genetic diversity.     

Colony kin structure and host‐parasite relatedness in the barnacle goose

Conspecific brood parasitism (CBP), females laying eggs in the nest of other ‘host’ females of the same species, is a common alternative reproductive tactic among birds. For hosts there are likely costs of incubating and rearing foreign offspring, but costs may be low in species with precocial chicks such as waterfowl, among which CBP is common. Waterfowl show strong female natal philopatry, and spatial relatedness among females may influence the evolution of CBP. Here we investigate fine‐scale kin structure in a Baltic colony of barnacle geese, Branta leucopsis, estimating female spatial relatedness using protein fingerprints of egg albumen, and testing the performance of this estimator in known mother‐daughter pairs. Relatedness was significantly higher between neighbour females (nesting ≤ 40 metres from each other) than between females nesting farther apart, but there was no further distance trend in relatedness. This pattern may be explained by earlier observations of females nesting close to their mother or brood sisters, even when far from the birth nest. Hosts and parasites were on average not more closely related than neighbour females. In 25 of 35 sampled parasitized nests, parasitic eggs were laid after the host female finished laying, too late to develop and hatch. Timely parasites, laying eggs in the host’s laying sequence, had similar relatedness to hosts as that between neighbours. Females laying late parasitic eggs tended to be less related to the host, but not significantly so. Our results suggest that CBP in barnacle geese might represent different tactical life‐history responses.     

Philopatry drives genetic differentiation in an island archipelago: comparative population genetics of Galapagos Nazca boobies (Sula granti) and great frigatebirds (Fregata minor)

Seabirds are considered highly mobile, able to fly great distances with few apparent barriers to dispersal. However, it is often the case that seabird populations exhibit strong population genetic structure despite their potential vagility. Here we show that Galapagos Nazca booby (Sula granti) populations are substantially differentiated, even within the small geographic scale of this archipelago. On the other hand, Galapagos great frigatebird (Fregata minor) populations do not show any genetic structure. We characterized the genetic differentiation by sampling five colonies of both species in the Galapagos archipelago and analyzing eight microsatellite loci and three mitochondrial genes. Using an F‐statistic approach on the multilocus data, we found significant differentiation between nearly all island pairs of Nazca booby populations and a Bayesian clustering analysis provided support for three distinct genetic clusters. Mitochondrial DNA showed less differentiation of Nazca booby colonies; only Nazca boobies from the island of Darwin were significantly differentiated from individuals throughout the rest of the archipelago. Great frigatebird populations showed little to no evidence for genetic differentiation at the same scale. Only two island pairs (Darwin – Wolf, N. Seymour – Wolf) were significantly differentiated using the multilocus data, and only two island pairs had statistically significant φ_ST values (N. Seymour – Darwin, N. Seymour – Wolf) according to the mitochondrial data. There was no significant pattern of isolation by distance for either species calculated using both markers. Seven of the ten Nazca booby migration rates calculated between island pairs were in the south or southeast to north or northwest direction. The population differentiation found among Galapagos Nazca booby colonies, but not great frigatebird colonies, is most likely due to differences in natal and breeding philopatry.     

Queen number and genetic relatedness in a neotropical wasp, Polybia occidentalis

We found that genetic relatedness among Polybia occidentalisworkers was .26±0.057, a value high enough to make altruisticbehavior by workers relatively easy to explain. This comparativelyhigh level of relatedness can be attributed to close relatednessamong queens of .57±0.077 and to great variation amongcolonies in numbers of queens. The harmonic mean of queen numberis 3.1 queens per colony, which is much lower than the arithmeticmean of 10.6 queens per colony. These results are consistentwith a colony cycle called cyclical oligogyny, that is characterizedby a reduction in queen number from colony initiation to colonyreproduction. We did not find any evidence that one or a fewqueens monopolized egg laying or that there was any inbreeding,both of which have been hypothesized to increase relatednessamong workers. Another factor that can increase relatednessamong workers and the brood they rear is withincolony segregationon the basis of relatedness. We found that combmate pupae aresignificantly more closely related to each other (r = .41) thanthey are to pupae in other combs (r = .33), but we have notinvestigated whether workers take advantage of these relatednesspatterns. This distribution of relatedness among combs willoccur if queens do not lay eggs randomly throughout the nest,but concentrate their egg laying on one or a subset of the availablecombs.     

Matrilineal kin clusters and their effect on reproductive success in the field vole Microtus agrestis

Kin dusters of philopatric females are thought to form the basicsocial organization of breeding females in various vole species.The spatial association between young breeding females and theirmothers was studied in five 2500–m² enclosures in naturalhabitats during mid- and late breeding season in summer 1992.The mothers (founder females) were introduced into the enclosuresin die beginning of the study in June, whereas the young breedingfemales were born within the enclosures. Matrilineal kinshipwas determined by using radionudides. In July-August, 58% ofyoung breeding females were philopatric, but 82% of the mother-daughterassociations broke up until August-September. Of the young femalesthat started to breed in August-September, only 12% were philopatricThus the kin clusters found were short Hved and few in numberduring the late breeding season. The reduction in the incidenceof the kin clusters coincided with an increase of populationdensity. The mean reproductive success of females breeding inkin clusters was better than that of those breeding separately.In addition, among the nonphilopatric females there was a positive,significant correlation between reproductive success and thedistance to the nearest unrelated founder female. Such correlationwas not found among the philopatric females.     

Sex-related spatial kin structure in a spring population of grey-sided voles Clethrionomys rufocanus as revealed by mitochondrial and microsatellite DNA analyses

Polymerase chain reaction-directed mitochondria (mt) and microsatellite DNA analyses were performed to examine the kin structure in a spring population of grey-sided voles Clethrionomys rufocanus in Hokkaido, Japan. The spatial distribution of 81 voles in a trapping grid (about 1 ha) was estimated by using the catch-mark-release method. DNA samples were extracted from the toes clipped for individual identification. Maternal lineages of voles were unequivocally determined by the mtDNA haplotypes, as identified by nucleotide sequencing of the control region. Relatedness between individuals was estimated based on the genotype and allele frequencies at several microsatellite loci. Although the distribution of voles was uniform within the grid, neighbouring females were frequently from the same maternal lineage. Relatedness values between females correlated negatively with geographical distances. Combination of the two molecular markers revealed four clusters of closely related, matrilineal females in the population, whereas no such cluster was apparent in males. The present study first demonstrated a sex-related spatial kin structure in a natural population of the grey-sided vole.     

Fine-scale genetic structuring in a natural population of European wild rabbits (Oryctolagus cuniculus)

The genetic structure of a free-living tagged population of European wild rabbits (Oryctolagus cuniculus) was investigated for two consecutive years (1990 and 1991) using 10 polymorphic microsatellite loci. A specific social behaviour, the formation of stable breeding groups, influenced the genetic structure of the population. These breeding groups were shown to constitute genetically differentiated units with low levels of gene flow between them. The average relatedness among members of a social group was higher than within the population as a whole. As a result of female philopatry coupled with male-biased natal dispersal, the relatedness of females was higher than that of males, both within social groups and in the whole population. Furthermore, the average relatedness of females within groups was twice the relatedness of females between groups. This study reveals marked fine-scale, intrapopulation genetic structure, which is attributable to the social behaviour of the European wild rabbit.     

Characterization of 18 microsatellite loci for woodrats of the Neotoma lepida group (Rodentia,Cricetidae, Neotominae)

The desert woodrat complex (Neotoma lepida group) is a set of four closely related species occupying the arid lands of western North America. We have developed 18 polymorphic microsatellite loci to analyse the population structure, mating patterns, and hybridization at points of contact between the contiguously allopatric species in the complex.     

Spatial distribution of genetic relatedness in a moorland population of red grouse (Lagopus lagopus scoticus)

Several aspects of the ecology and biology of red grouse (Lagopus lagopus scoticus) could prevent the complete admixture of genes within and between populations. Male red grouse display a high degree of natal philopatry, are territorial, and show less aggression to kin man to non-kin. Such factors acting in combination predict limited male-mediated gene flow, which will promote social structure within a population by the formation of stable kin clusters, and facilitate a rapid rise in allelic coancestry and/or inbreeding. In this study we utilize hypervariable microsatellite polymorphisms to examine the extent of social affiliation between relatives in a moorland population of grouse from NE Scodand. Levels of genetic relatedness between individual male red grouse occupying territories at Glas Choille in die spring and autumn of 1995 were examined, and kin clusters delimited. Nine kin groups (mean size = 2.4 individuals) were identified prior to breeding in the spring, which increased to 11 kin groups (mean size =4.0 individuals) when territories were reformed in the autumn. The majority of tiiose individuals that were recruited into the adult population during the autumn already had a first-order male relative established, supporting the hypothesis that recruitment is facilitated by behavioural interactions among relatives. The demographic and population genetic consequences of philopatric recruitment and kin clustering are examined and discussed.     

Philopatry and natal dispersal in a sedentary population of western marsh harrier

Dispersal is a key life-history trait because it influences population dynamics and population genetic structure. From a behavioural perspective, the study of natal dispersal requires some understanding of the mechanisms that affect individual movements, because movements of an animal form a path that is continuous throughout its life. Our aim was to investigate juvenile dispersal strategies in the western marsh harrier Circus aeruginosus , between fledging and first breeding attempt (from 1 to 4 years later, depending on the sex and individual). Using radio tracking, we monitored dispersing juvenile harriers and their home-range size variations within a sedentary population in central western France from 2001 to 2007. Juvenile dispersal strategy was mainly characterized by a very high natal philopatry (i.e. birds that remained within the study area) and short-distance dispersal. All but one bird (out of 39) remained within the study area between their first winter and their first spring, and 96.0% during their first spring. The distance moved at 2 years of age was significantly larger for males than for females (3800± sd 3593 m and 935± sd 481 m for seven males and six females, respectively), in contrast to most bird species studied so far. Home-range size was not sex biased and significantly decreased with age. In addition, non-breeding birds had larger home ranges (1603± sd 2128 ha) than breeders (349± sd 185 ha). Using data obtained from other populations, juvenile marsh harrier dispersal strategies appeared to be determined by migratory status (migratory birds dispersing farther) and demographic parameters (juvenile survival or fecundity).     

Host-parasite kinship in a female-philopatric bird population: evidence from relatedness trend analysis

Conspecific brood parasitism (CBP), an alternative reproductive tactic where some females lay eggs in the nests of other females of the same species, occurs in many animals with egg care. It is particularly common in waterfowl, for reasons that are debated. Many waterfowl females nest near their birthplace, making it likely that some local females are relatives. We analyse brood parasitism in a Hudson Bay population of common eiders, testing predictions from two alternative hypotheses on the role of relatedness in CBP. Some models predict host-parasite relatedness, others predict that parasites avoid close relatives as hosts. To distinguish between the alternatives, we use a novel approach, where the relatedness of host-parasite pairs is tested against the spatial population trend in pairwise relatedness. We estimate parasitism, nest take-over and relatedness with protein fingerprinting and bandsharing analysis of egg albumen, nondestructively sampled from each new egg in the nest throughout the laying period. The results refute the hypothesis that parasites avoid laying eggs in the nests of related hosts, and corroborate the alternative of host-parasite relatedness. With an estimated r of 0.12-0.14, females laying eggs in the same nest are on average closer kin than nesting neighbour females. Absence of a population trend in female pairwise relatedness vs. distance implies that host-parasite relatedness is not only an effect of strong natal philopatry: some additional form of kin bias is also involved.     

The kin selection hypothesis in a lekking mole cricket: assessing nested patterns of relatedness

Loosely defined, a lek is a male mating aggregation visited by females primarily for the purpose of fertilization. No consensus has been forged that successfully explains how and why leks have evolved across the full breadth of lekking taxa. The two major conceptual explanations (cooperation and competition) are both intricately intertwined in any given system and exhibit varying levels of plasticity based on an organism's environment and life history. The kin selection hypothesis suggests that if females prefer larger leks (as is often the case), unattractive males may aggregate with their attractive relatives in order to boost the latter's reproductive success, while effectively sacrificing any opportunities of their own. Here we develop microsatellite markers to genetically evaluate the kin selection hypothesis by measuring relatedness and precise spatial locations of males in a population of the lekking prairie mole cricket (Gryllotalpa major Saussure). Results indicate that neighbouring males are often highly related, suggesting that kin selection may play some role in this system. However, because leks are comprised of multiple kin groups, if kin selection is operating it is likely doing so at a smaller scale than predicted by the kin selection hypothesis of lek formation. The high levels of subgroup relatedness within this species likely occurs as a passive process due to male viscosity, but the functional implications of this interesting genetic organization remain unknown.     

Families in space: relatedness in the Barents Sea population of polar bears (Ursus maritimus)

The kin structure and dispersal pattern of polar bears ( Ursus maritimus ) of the Barents Sea was investigated during the spring mating season using two complementary approaches. First, individual genotypes based on the analyses of 27 microsatellite loci of 583 polar bears were related to field information gathered from 1146 bears in order to reconstruct the animals' pedigrees and to infer geographical distances between adult bears of different relatedness categories. According to the data, the median natal dispersal distance of the male animals was 52 km while that of the females was 93 km. Second, the relatedness of pairs of adult bears was estimated and correlated to the geographical distance between them. The female dyads had a much stronger kin structure than the male dyads. The 'pedigree approach' revealed a male kin structure which could not be detected using the 'relatedness approach'. This suggests that, on a broader scale, effective dispersal is slightly male biased. Despite fidelity to natal areas, male-mediated gene flow may nevertheless prevent genetic differentiation. Males might occasionally shift their home range which could therefore lead to a male-biased breeding dispersal. Our results showed that a nonterritorial species such as the polar bear that has a high dispersal potential, lives in a highly unstable environment and migrates seasonally is still able to exhibit a distinct kin structure during the mating season.     

Natal Dispersal and Philopatry of Red Foxes in Urban and Agricultural Areas of Illinois

Abstract: Dispersal and philopatry may be influenced by habitat, intraspecific and interspecific interactions, and resource quality. Dispersal may vary substantially between urban and rural wildlife populations due to differences in urban-rural habitat and trophic relationships. We examined effects of environmental, body condition, and social influences on dispersal and philopatry of urban and rural red foxes (Vulpes vulpes) in east-central Illinois and western Indiana, USA. We recorded 96 dispersal events and 66 cases of philopatry in juvenile foxes. We used Akaike's Information Criterion to evaluate regression models of dispersal probability, initiation date, distance, and days spent dispersing. Habitat (i.e., urban-rural), sex, row-crop percentage in natal home ranges, family home-range overlap, and social interactions with family members all influenced dispersal probability. Juvenile foxes with fewer row crops in their home ranges, individuals with high intra-familial overlap of summer range, females, and urban foxes were associated with philopatry. Dispersals began mid-September and ended in March. Rural juveniles dispersed 23 days earlier than did urban conspecifics. Heavier foxes (capture wt) and those with heavily row-cropped home ranges dispersed earlier. Littermates dispersed at similar times, although in different directions. Dispersal distances averaged 44.8 km for all foxes (range = 1–478 km). Male and urban foxes dispersed farther than female and rural foxes, respectively. Time between dispersal and settlement averaged 41.2 days (range = 2–114 days), with urban foxes dispersing over longer time periods. Dispersal direction between the sexes had different directional distributions, though mean vectors for both were oriented north. Dispersing foxes selected cropland in proportion to availability, whereas grassland was selected preferentially. We demonstrate influences of habitat, resource availability, familial social interactions, and interspecific interactions on dispersal and philopatry of juvenile red foxes in an intensively row-cropped region of the Midwest. Our findings demonstrate red fox dispersal ecology differences in urban and rural environments. In intensively row-cropped regions of the Midwest where landscape crop harvest alters dispersal timing, minimizing seasonal habitat changes with permanent vegetative structure (e.g., crop food plots, native grass fields) would likely delay dispersal activity, and increase survival.     

Genetic relatedness and female spatial organization in a solitary carnivore,the raccoon,Procyon lotor

Among mammals, some of the most common types of cohesive social groupings originate from natal philopatry through the extended mother family. This retention of females within social groups (i.e. the nonrandom dispersion of female relatives in space) should affect population genetic structure. We examined the relationship between genetic relatedness and female spatial organization in a wild population of the North-American raccoon, Procyon lotor, a solitary carnivore in east Tennessee. Multilocus genetic band-sharing data and 3(1/2) years of radiotelemetry observations were used to study the spatial and genetic relationships among 38 adult females. DNA amplification employing primers of arbitrary sequence (random amplified polymorphic DNA; RAPD) indicated that female philopatry in raccoons led to a greater likelihood of neighbours being more related than expected by chance. Genetic distance based on RAPD band frequency was positively correlated with spatial distance among females (P = 0.0001) and genetic similarity was positively correlated with the extent of home-range overlap (P = 0.0028). Philopatry seemed biased towards females; average female-female similarities were greater than average male-male similarities (P = 0.0001), or average male-female similarities (P = 0.0001). High home-range overlap among some females with low or moderate levels of band sharing indicated that maternal inheritance of space was not a prerequisite for establishing or sharing home ranges. Female philopatry was the most probable explanation for the nonrandom spatial and genetic association of raccoons in east Tennessee.     

Costs and benefits of female-biased natal philopatry in the common goldeneye

Sex-biased natal dispersal in long-lived species may resultin interactions between parents and mature young of the philopatricsex. To investigate the evolutionary basis of natal philopatryin a noncooperative species, the common goldeneye Bucephalaclangula, we studied possible costs and benefits of simultaneousbreeding of females and philopatric daughters. We did not find any fitness consequences of a daughter's breeding on their mother'sbreeding in terms of nest-site selection, body weight, clutchsize, hatching date, or hatching success. Our results, therefore,did not support the assumption of the local resource competitionhypothesis, that the natally philopatric sex should be morecostly to a breeding parent. As possible benefits for daughters returning to their natal area, we tested inheritance of nestsites from mothers and explored whether daughters utilize thepresence of their mother by parasitically sneaking into hermother's nest. Daughters' nest-site selection was not associatedwith the presence of their mothers. A comparison between daughtersand control females revealed that daughters chose their nestsite closer to their natal nest than expected by nest-siteavailability alone. Daughters could not expect to inherit anest site from their mother, and we did not find other indicationsof cooperation between relatives either. The mother's clutchsize did not increase in the year breeding with the daughter, indicating daughters do not parasitize their mother's nest.We suggest that benefits such as decreased nest predation riskassociated with nesting close to the natal nest site may beimportant in the natal philopatric behavior of the species.     

Relatedness and spatial proximity as determinants of host–parasite interactions in the brood parasitic Barrow's goldeneye (Bucephala islandica)

Recent studies, which have found evidence for kin-biased egg donation, have sparked interest in re-assessing the parasitic nature of conspecific brood parasitism (CBP). Since host–parasite kinship is essential for mutual benefits to arise from CBP, we explored the role of relatedness in determining the behaviour of conspecific nest parasites and their hosts in nesting female Barrow's goldeneyes ( Bucephala islandica ), a duck in which CBP is common. The results revealed that the amount of parasitism increased with host–parasite relatedness, the effect of which was independent of geographical proximity of host and parasite nests. Proximity per se was also positively associated with the amount of parasitism. Furthermore, while hosts appeared to reduce their clutch size as a response to the presence of parasitic eggs, the magnitude of host clutch reduction also tended to increase with increasing relatedness to the parasite. Hence, our results indicate that both relatedness and spatial proximity are important determinants of CBP, and that host clutch reduction may be an adaptation to nest parasitism, modulated by host–parasite relatedness. Taken together, the results provide a demonstration that relatedness influences host and parasite behaviour in Barrow's goldeneyes, resulting in kin-biased egg donation.     

Relatedness and genetic structure in a socially polymorphic population of the spider Anelosimus studiosus

The evolution of sociality remains a challenge in evolutionary biology and a central question is whether association between kin is a critical factor favouring the evolution of cooperation. This study examines genetic structure of Anelosimus studiosus, a spider exhibiting polymorphic social behaviour. Two phenotypes have been identified: an ‘asocial’ phenotype with solitary female nests and a ‘social’ phenotype with multi‐female/communal nests. To address the questions of whether these phenotypes are differentiated populations and whether cooperative individuals are closely related, we used microsatellites to analyse individuals from both communal and solitary nests. We found no evidence of differentiation between social and solitary samples, implying high rates of interbreeding. This is consistent with the hypothesis that these phenotypes coexist as a behavioural polymorphism within populations. Pairwise relatedness coefficients were used to test whether cooperating individuals are more closely related than expected by chance. Pairwise relatedness of females sharing communal webs averaged 0.25, the level expected for half‐siblings and significantly more closely related than random pairs from the population. Solitary females collected at similar distances to the communal spider pairs were also more closely related than expected by chance (mean relatedness = 0.18), but less related than social pairs. These results imply that low dispersal contributes to increase likelihood of interaction between kin, but relatedness between social pairs is not explained by spatial structure alone. We propose that these phenotypes represent stages in the evolution of sociality, where viscous population structure creates opportunities for kin selection and cooperation is favoured under certain environmental conditions.     

Clustering of related individuals in a population of the Australian lizard, Egernia frerei

Stable social aggregations are rarely recorded in lizards, but have now been reported from several species in the Australian scincid genus Egernia. Most of those examples come from species using rock crevice refuges that are relatively easy to observe. But for many other Egernia species that occupy different habitats and are more secretive, it is hard to gather the observational data needed to deduce their social structure. Therefore, we used genotypes at six polymorphic microsatellite DNA loci of 229 individuals of Egernia frerei, trapped in 22 sampling sites over 3500 ha of eucalypt forest on Fraser Island, Australia. Each sampling site contained 15 trap locations in a 100 x 50 m grid. We estimated relatedness among pairs of individuals and found that relatedness was higher within than between sites. Relatedness of females within sites was higher than relatedness of males, and was higher than relatedness between males and females. Within sites we found that juvenile lizards were highly related to other juveniles and to adults trapped at the same location, or at adjacent locations, but relatedness decreased with increasing trap separation. We interpreted the results as suggesting high natal philopatry among juvenile lizards and adult females. This result is consistent with stable family group structure previously reported in rock dwelling Egernia species, and suggests that social behaviour in this genus is not habitat driven.     

Parentage-based pedigree reconstruction reveals female matrilineal clusters and male-biased dispersal in nongregarious Asian great apes, the Bornean orang-utans (Pongo pygmaeus)

Philopatry and sex-biased dispersal have a strong influence on population genetic structure, so the study of species dispersal patterns and evolutionary mechanisms shaping them are of great interest. Particularly nongregarious mammalian species present an underexplored field of study: despite their lower levels of sociality compared to group-living species, interactions among individuals do occur, providing opportunities for cryptic kin selection. Among the least gregarious primates are orang-utans (genus: Pongo), in which preferential associations among females have nevertheless been observed, but for which the presence of kin structures was so far unresolved because of the equivocal results of previous genetic studies. To clarify relatedness and dispersal patterns in orang-utans, we examined the largest longitudinal set of individuals with combined genetic, spatial and behavioural data. We found that males had significantly higher mitochondrial DNA (mtDNA) variation and more unique haplotypes, thus underscoring their different maternal ancestries compared to females. Moreover, pedigree reconstruction based on 24 highly polymorphic microsatellite markers and mtDNA haplotypes demonstrated the presence of three matrilineal clusters of generally highly related females with substantially overlapping ranges. In orang-utans and possibly other nongregarious species, comparing average biparental relatedness (r) of males and females to infer sex-biased dispersal is extremely problematic. This is because the opportunistic sampling regime frequently employed in nongregarious species, combined with overlapping space use of distinct matrilineal clusters, leads to a strong downward bias when mtDNA lineage membership is ignored. Thus, in nongregarious species, correct inferences of dispersal can only be achieved by combining several genetic approaches with detailed spatial information.