凉山半细毛羊1号染色体微卫星遗传连锁图谱的构建

实验选择绵羊1号条染色体上的9个微卫星标记,采用父系半同胞家系群体（共387个个体）构建凉山半细毛羊1号染色体遗传连锁图。建立的资源参考家系通过20个微卫星标记进行了系谱确证。试验结果表明,9个标记的等位基因数变化范围为5~15个,杂合度在0.202~0.831之间,平均杂合度为0.617,各标记的平均多态信息含量PIC=0.604。构建的凉山半细毛羊1号条染色体遗传连锁图总长度311.0 cM,与美国肉畜中心（USDA）和国际绵羊作图中心（IMF）构建的绵羊1号条染色遗传连锁图结果基本一致。可用于下一步的QTL定位研究。     

母体遗传效应对青海细毛羊生产性能遗传参数估计的影响

为了研究母体遗传效应对青海细毛羊生长性状、产毛性状的影响, 文章采用平均信息最大约束似然法应用不同混合动物模型估计青海细毛羊生产性状的遗传参数, 并采用似然比检验对不同模型进行比较分析。各模型中均包括固定效应、个体直接加性遗传效应、残差效应; 随机效应为：个体永久环境效应、母体遗传效应、母体永久环境效应。不同模型对随机效应作了不同考虑：模型1不考虑个体永久环境效应、母体遗传效应、母体永久环境效应; 模型2考虑母体永久环境效应; 模型3考虑母体遗传效应; 模型4考虑母体遗传效应和母体永久环境效应; 模型5考虑个体永久环境效应和母体遗传效应; 模型6考虑个体永久环境效应、母体遗传效应、母体永久环境效应。各模型估计的初生重遗传力为：0.1896~0.3781; 断奶重遗传力为：0.2537~0.2890; 周岁重遗传力范围：0.2244~0.3225; 成年羊体重遗传力范围：0.2205~0.3983; 产毛量遗传力为：0.1218~0.1490; 羊毛细度遗传力为：0.0983~0.4802; 羊毛长度遗传力为：0.1170~0.1311。与模型1相比, 模型3对于初生重、断奶重差异显著(P<0.01), 对于周岁重、成年羊体重各模型与模型1的似然比检验差异不显著(P>0.05); 与模型6相比, 模型4、5对于羊毛细度差异显著(P<0.01), 模型4对羊毛长度差异显著(P<0.05), 对于产毛量各模型与模型6似然比检验差异不显著(P>0.05)。生长性状中初生重、断奶重受母体遗传效应影响显著, 周岁重、成年羊体重受母体遗传效应影响不显著; 产毛性状中羊毛细度、长度受母体遗传效应影响显著, 产毛量受母体遗传效应影响较弱。     

母体遗传效应对青海细毛羊生产性能遗传参数估计的影响

为了研究母体遗传效应对青海细毛羊生长性状、产毛性状的影响,文章采用平均信息最大约束似然法应用不同混合动物模型估计青海细毛羊生产性状的遗传参数,并采用似然比检验对不同模型进行比较分析。各模型中均包括固定效应、个体直接加性遗传效应、残差效应;随机效应为:个体永久环境效应、母体遗传效应、母体永久环境效应。不同模型对随机效应作了不同考虑:模型1不考虑个体永久环境效应、母体遗传效应、母体永久环境效应;模型2考虑母体永久环境效应;模型3考虑母体遗传效应;模型4考虑母体遗传效应和母体永久环境效应;模型5考虑个体永久环境效应和母体遗传效应;模型6考虑个体永久环境效应、母体遗传效应、母体永久环境效应。各模型估计的初生重遗传力为:0.1896~0.3781;断奶重遗传力为:0.2537~0.2890;周岁重遗传力范围:0.2244~0.3225;成年羊体重遗传力范围:0.2205~0.3983;产毛量遗传力为:0.1218~0.1490;羊毛细度遗传力为:0.0983~0.4802;羊毛长度遗传力为:0.1170~0.1311。与模型1相比,模型3对于初生重、断奶重差异显著(P<0.01),对于周岁重、成年羊体重各模型与模型1的似然比检验差异不显著(P>0.05);与模型6相比,模型4、5对于羊毛细度差异显著(P<0.01),模型4对羊毛长度差异显著(P<0.05),对于产毛量各模型与模型6似然比检验差异不显著(P>0.05)。生长性状中初生重、断奶重受母体遗传效应影响显著,周岁重、成年羊体重受母体遗传效应影响不显著;产毛性状中羊毛细度、长度受母体遗传效应影响显著,产毛量受母体遗传效应影响较弱。     

遗传算法支持下土地利用空间分形特征尺度域的识别

针对土地利用空间分形特征只存在于有限尺度域的现象,采用无标度区内离散点拟合的离差平方和平均值最小作为目标函数,提出了一种基于遗传算法的土地利用空间分形特征尺度域的识别方法,用于准确计算分形维数的有效区间范围。以武汉市武昌区水域空间分形特征为例,利用Quickbird多光谱遥感影像提取土地利用空间信息,重点讨论了基于遗传算法识别土地利用空间分形特征尺度域范围的总体思路、适应度函数和遗传算子等环节;然后分别从测定系数、标准差和无标度区间3个角度,将其同人工判断法、相关系数法以及强化系数法进行对比讨论;并结合研究区域实际的水域空间分布格局,分析不同方法计算所得半径维数的合理性。结果表明,土地利用分形特征尺度域的范围对分形维数计算结果有较大影响;相对于传统计算方法来说,遗传算法在尺度无标度区间识别上具有更高的精度,可以为土地利用空间格局分形特征的研究提供客观指导意见。     

绵羊3号染色体的遗传连锁图谱构建及QTL定位

以四川凉山半细毛羊资源群体为研究对象, 选取位于绵羊3号染色体上的9个微卫星标记, 构建遗传连锁图谱, 用QTLExpress软件对影响绵羊生长发育的5个性状进行QTL定位分析。结果显示: (1) 9个微卫星标记的平均多态信息含量和平均群体杂合度分别为0.606 (0.378～0.738)、0.650 (0.404～0.766); (2) 连锁图谱总长为339.8 cM, 标记平均间距为42.5 cM, 略长于国际主要绵羊作图组织构建的图谱; (3) QTLExpress分析表明, 检测到影响羔羊断奶重、断奶日增重和成年体重的3个QTL, 分别位于99 cM、219 cM、273 cM处, 影响断奶日增重和成年体重的QTL都达到显著水平, 而影响羔羊断奶重的QTL未达到显著水平。     

醋栗番茄Solanum pimpinellifolium遗传多样性分析

野生种醋栗番茄包含丰富的变异,具有众多优良性状。本研究对从世界不同地区收集的433份醋栗番茄遗传资源进行了表型鉴定及遗传多样性分析。表型鉴定结果表明,在收集的433份醋栗番茄中约有14%为樱桃番茄,370份典型醋栗番茄中约22%的材料存在不同程度的分离。群体变异分析表明,不同性状间变异系数存在较大差异,其中柱头变异系数最大,为56.716%;花瓣数遗传稳定,变异系数最小,为2.082%;相关分析表明,多个性状间存在显著相关性;利用表型和基因型数据聚类均将醋栗番茄群体划分为两大类群;主成分分析表明,坐果率、单果重、可溶性固形物对变异的贡献率较大。研究结果将为利用醋栗番茄进行栽培种番茄遗传改良奠定一定的基础。     

不同土地利用类型下土壤粒径分形分析——以黄土丘陵沟壑区为例

土壤粒径分布影响土壤的水力特性、土壤肥力状况以及土壤侵蚀等,是重要土壤物理特性之一。在水蚀严重的黄土丘陵沟壑区,不同的土地利用类型对水土流失的阻截作用不同,因而进一步导致其土壤粒径分布的差异。对不同土地利用类型下土壤粒径分布的分形和多重分形分析发现：黄绵土土壤粒径分布包含有3个无标度区间,分别为粘粒域、粉粒域和砂粒域;土壤粒径分布的分形维数D、粉粒域维数Dsilt、砂粒域维数Dsand、信息维数D1、信息维数/容量维数D1/D0与土壤细颗粒含量和有机质含量成显著的正相关关系;土地利用对分形维数D、粉粒域维数Dsilt、砂粒域维数Dsand、容量维数D0、信息维数D1、信息维数/容量维数比值D1/D0的影响较显著。这表明这些分形和多重分形参数可以作为反映土壤物理性质和土壤质量的潜在性指标,其实用性有待进一步探讨。     

母猪生产力性状的遗传分析

对二花脸猪、大白猪及其杂交一代３个群体共１６８６窝的生产力性状资料进行了遗传分析。用公畜模型估计了初生窝重、初生仔猪平均重、２０日龄窝重、２０日龄仔猪平均重、４５日龄窝重、４５日龄仔猪平均重的表型参数和遗传参数。与大白猪相比,二花脸猪抚育能力较强,生长速度较慢。前４个性状受母体影响较大,后２个性状受母体影响较小。６个性状的遗传力分别为０．２５１、０．２７７、０．３４１、０．３３０、０．２３５、０．     

无患子关联分析实生群体的表型性状

为寻找适于进行关联分析的无患子(Sapindus mukorossi Gaertn.)群体,寻找开发与主要经济性状紧密关联的分子标记,在无患子主要分布区选出一个由110棵实生单株组成的满足关联分析的群体。对群体内每单株的25个表型性状利用单因素方差分析、主成分分析和相关性分析等方法进行分析。结果表明:该群体25个表型性状中23个性状变异为显著(P0.05),其中7个表征经济的性状变异达到极显著(P0.01),25个性状的变异程度差异较大,变异系数范围为5.53%~65.67%;主成分分析表明种实性状、树体性状和果枝性状是主要的性状变异;表型变异在群体内分布均匀、无明显层次结构,但性状间存在不同层次的相关性。结果表明,该群体是进行无患子关联分析研究的理想群体,可以以该群体为基础选择不同利用目标的优良单株,可以该种群为基础材料开展无患子分子辅助育种工作。     

民勤绿洲边缘2种生境红砂种群分形特征及影响因素

以民勤绿洲边缘丘间低地和梭梭林固定沙丘2种生境下红砂种群为研究对象,采取空间替代时间和分形维数(计盒维数、信息维数和关联维数)研究了红砂种群的结构特征和空间格局的分形特征,并对其影响因素做了主成分分析,研究结果表明:(1)红砂种群在丘间低地生境下,主要集中在龄级Ⅰ,更新较好;在固定沙丘生境下,主要集中在龄级Ⅲ,更新受到很大的限制。(2)与梭梭林固定沙丘生境下相比,丘间低地生境下红砂种群个体间竞争较弱,但占据和利用空间能力较强且格局强度较大。红砂种群的计盒维数和信息维数对种群的个体数量、更新状况和分布情况反映灵敏,而且关联维数在干旱地区有其特定的生态学意义,即只表示种群竞争的强弱。(3)分形维数不仅与群落结构(密度、幼体数量等)有关,还与生境因子有关。主成分分析表明,土壤结皮类型是红砂种群格局分形维数的第一主成分,土壤含水量、土壤全盐量分别是第二和第三主成分,这三个主成分的累计贡献率为80.002%。(4)建议在防风固沙和植被恢复时,丘间低地生境下可以通过增大红砂Ⅰ小龄级个体的密度来提高整体的防风固沙能力和幼苗的成活量,但在梭梭林固定沙丘生境下如何提高红砂Ⅰ小龄级个体的成活率是保护和利用红砂的关键。     

云贵鹅耳枥种群分布格局的分形特征

应用分形理论中的计盒维数和信息维数探讨了贵阳喀斯特山地贵鹅耳枥种群分布格局的分形特征。结果表明,贵鹅耳枥种群的分布格局具有分形特征,其计盒维数为1．1853－1．7419,信息维数为1．1961－1．7051。集群型的贵鹅耳枥种群的计盒维数和信息维数均比随机型的高。计盒维数定量地反映了贵鹅耳枥种群占据生态空间的能力,信息维数则揭示了该种群格局强度的尺度变化程度和表征了种群个体分布的非均匀性。这两种维数方法都适用于贵鹅耳枥种群分布格局分形特征的定量描述。     

涪陵磨盘沟桫椤种群格局的分形特征-信息维数

应用分形理论中的信息维数探讨了涪陵磨盘沟桫椤种群分布格局的分形特征.结果表明桫椤种群的分布格局具有分形特征,信息维数适用于涪陵磨盘沟桫椤种群分布格局分形特征的定量描述.6个不同植物群落中桫椤种群的信息维数大小依次为桫椤+毛叶木姜子(1.584)>桫椤+血桐-火炭木(0.947)>桫椤+盐肤木-腹水草(0.828)>桫椤+黄牛奶树(0.779)>桫椤+黄杞-南川楼梯草(0.635)>桫椤+白栎+异叶榕(0.535),这种差异反映了桫椤在各群落中更新状况的差异.集群型的信息维数比随机型的高,信息维数揭示了桫椤种群格局强度的尺度变化程度和表征了种群个体分布的非均匀性.     

广西木论自然保护区铁榄群落主要乔木种群格局的分形特征

为了揭示种群空间分布特征随尺度的变化规律,探讨不同种群对空间资源的占据能力和生态适应能力及分形差异,采用计盒维数、信息维数和关联维数对木论自然保护区铁榄群落主要乔木种群格局特征进行了研究。结果表明,优势种铁榄（Sinosideroxylon pedunculatum）、东女贞（Ligustrum japonicum）、小栾树（Boniodendron minius）、稀有濒危种掌叶木（Handeliodendron bodinieri）、青檀（Pteroceltis tatarinowii）5个种群在相应的尺度具有明显的分形特征;计盒维数和信息维数大小顺序一致,均为：铁榄〉东女贞〉小栾树〉掌叶木〉青檀;在5个种群中,铁榄计盒维数为1．7763最大,接近2,对空间环境的占据能力最强,信息维数（1．7206）也最大,个体聚集强度强,在群落中处于绝对优势地位,青檀计盒维数（0．8316）和信息维数（0．8990）最小,对环境的占据利用能力弱,个体聚集程度整体较弱,在群落中处于伴生地位;在0．5～50m的尺度上,关联维数大小顺序为：铁榄（1．7314）〉东女贞（1．6688）〉小栾树（1．6050）〉青檀（0．7868）,而掌叶木只有在大的尺度上才出现关联,且关联较强。3个分形维数大小的不同组合,能够全面揭示不同种群格局特征和种群在群落中所处地位的差异。     

红树植物木榄种群高度结构的分形特征

 采用计测等值线分形维数的方法,探讨山口国家级红树林自然保护区内的木榄(Bruguiera gymnorrhiza)种群高度结构的特征。结果表明,木榄种群的高度结构具有分形的特征,其计盒维数介于1.61～1.90之间,信息维数介于1.63～1.84之间,分形维数的高低主要与幼树个体的数量、个体的集聚程度和高度层次结构的复杂程度等密切相关。计盒维数定量描述种群占据垂直空间的能力和程度,而信息维数揭示种群高度层次细节的尺度变化强度和个体高度分布的非均匀性程度。分析表明,等值线法能够有效地表征木榄种群高度结构的分     

天然黄山松种群格局的分形特征——计盒维数与信息维数

采用计盒维数和信息维数对屏南和寿宁不同群落的天然黄山松(Pinus taiwanensis)种群格局的分形特征进行比较分析.结果表明,天然黄山松种群格局具有分形特征,其计盒维数值在1.299 8～1.862 6之间,不同群落的大小次序为Q3>Q1>Q2>Q4>Q7>Q8>Q5>Q6;信息维数值在1.205 7～1.863 7之间,大小次序是Q3>Q1>Q2>Q4>Q8>Q7>Q5>Q6,屏南天然黄山松近纯林黄山松种群的计盒维数和信息维数均高于寿宁混交林,计盒维数定量描述种群占据水平空间的能力和程度,信息维数揭示种群格局强度的尺度变化及个体分布的非均匀程度,分形维数值的高低与群落环境、种群密度、种群在群落中的优势地位、个体的聚集程度及幼树个体数量等相关.黄山松种群格局分形维数随海拔呈现上下波动变化,1 250～1 270 m是更适生的海拔范围.此外,黄山松种群格局的分形特征存在一定的尺度范围,其拐点尺度是分形范围的下限尺度.     

Association of an insulin-like growth factor 1 gene microsatellite with phenotypic variation and estimated breeding values of growth traits in Canchim cattle

A population of 1398 Canchim (CA) cattle was genotyped to assess the association of an insulin-like growth factor 1 (IGF1) gene microsatellite with phenotypic variation and estimated breeding values of pre-weaning, weaning and post-weaning growth traits. After an initial analysis, the IGF1 genotype only had a significant effect (P < 0.05) on birth weight (BW) and weaning weight adjusted to 240 days (WW240). For these two traits, direct and maternal breeding values were estimated using the restricted maximum likelihood (reml). Two analyses were carried out. In the first (Model I), all fixed effects were fitted. In the second (Model II), the fixed effect of the IGF1 genotype was omitted. The estimated genetic and phenotypic components of variance were similar for every trait in both models. For Model I, estimated direct and maternal heritabilities were 0.26 and 0.16 for BW and 0.23 and 0.14 for WW240 respectively. The genetic and phenotypic correlations between BW and WW240 were 0.38 and 0.38 (Model I) and 0.19 and 0.38 (Model II) respectively. Fifty animals were classified according to their direct and maternal breeding values for both traits. Spearman rank-order correlation between animal rankings in the two models was used to assess the effect of including the IGF1 genotype in the model. Non-significant values from this correlation were indicative of a difference in breeding value rankings between the two approaches. The IGF1 gene was found to be associated with phenotypic variation and breeding values in the early phase of growth.     

Evaluation of the sustainability of contrasted pig farming systems: breeding programmes

The sustainability of breeding activities in 15 pig farming systems in five European countries was evaluated. One conventional and two differentiated systems per country were studied. The Conventional systems were the standard systems in their countries. The differentiated systems were of three categories: Adapted Conventional with focus on animal welfare, meat quality or environment (five systems); Traditional with local breeds in small-scale production (three systems) and Organic (two systems). Data were collected with a questionnaire from nine breeding organisations providing animals and semen to the studied farming systems and from, on average, five farmers per farming system. The sustainability assessment of breeding activities was performed in four dimensions. The first dimension described whether the market for the product was well defined, and whether the breeding goal reflected the farming system and the farmers’ demands. The second dimension described recording and selection procedures, together with genetic change in traits that were important in the system. The third dimension described genetic variation, both within and between pig breeds. The fourth dimension described the management of the breeding organisation, including communication, transparency, and technical and human resources. The results show substantial differences in the sustainability of breeding activities, both between farming systems within the same category and between different categories of farming systems. The breeding activities are assessed to be more sustainable for conventional systems than for differentiated systems in three of the four dimensions. In most differentiated farming systems, breeding goals are not related to the system, as these systems use the same genetic material as conventional systems. The breeds used in Traditional farming systems are important for genetic biodiversity, but the small scale of these systems renders them vulnerable. It is hoped that, by reflecting on different aspects of sustainability, this study will encourage sustainable developments in pig production.     

Near panmixia at the distribution‐wide scale but evidence of genetic differentiation in a geographically isolated population of the Terek Sandpiper Xenus cinereus

Populations from different parts of a species range may vary in their genetic structure, variation and dynamics. Geographically isolated populations or those located at the periphery of the range may differ from those located in the core of the range. Such peripheral populations may harbour genetic variation important for the adaptive potential of the species. We studied the distribution‐wide population genetic structure of the Terek Sandpiper Xenus cinereus using 13 microsatellite loci and the mitochondrial DNA (mtDNA) control region. In addition, we estimated whether genetic variation changes from the core towards the edge of the breeding range. We used the results to evaluate the management needs of the sampled populations. Distribution‐wide genetic structure was negligible; the only population that showed significant genetic differentiation was the geographically isolated Dnieper River basin population in Eastern Europe. The genetic variation of microsatellites decreased towards the edge of the distribution, supporting the abundant‐centre hypotheses in which the core area of the distribution preserves the most genetic variation; however, no such trend could be seen with mtDNA. Overall genetic variation was low and there were signs of past population contractions followed by expansion; this pattern is found in most northern waders. The current effective population size (N_e) is large, and therefore global conservation measures are not necessary. However, the marginal Dnieper River population needs to be considered its own management unit. In addition, the Finnish population warrants conservation actions due to its extremely small size and degree of isolation from the main range, which makes it vulnerable to genetic depletion.     

元宝山南方红豆杉克隆种群分布格局的分形特征

南方红豆杉(Taxus chinensis var. mairei)是提取抗癌药物紫杉醇的珍贵资源植物。分布于广西元宝山自然保护区的南方红豆杉,自然状态下以克隆繁殖方式进行种群更新,研究其种群克隆生长的空间分布格局,可揭示种群克隆繁殖特性和生态适应机制,对南方红豆杉这一珍稀濒危物种的保护和管理具有重要意义。利用分形理论中的计盒维数和信息维数,对元宝山的南方红豆杉克隆种群空间分布格局的分形特征进行了分析,结果表明:种群空间分布格局存在分形特征,其计盒维数介于0.993 1~1.353 1之间,信息维数介于1.350 8~1.652 1。南方红豆杉克隆种群格局的计盒维数远离最大理论维数值2,种群总体对空间的占据能力较弱。克隆构型指数与种群计盒维数密切相关。分析结果显示,克隆构型趋于“密集型”的种群具有较强的空间占据能力,而克隆构型趋于“游击型”的种群其空间占据能力较弱。信息维数与种群的集聚强度密切相关,其差异反映了种群格局强度的变化,较大的信息维数反映种群个体的集聚强度较高,而较小的信息维数则反映出种群个体间的集聚强度较弱,其维数值大小与分株种群数量、分株种群斑块的空间配置密切相关。     

From Hutchinsonian ratios to spatial scaling theory: the interplay among limiting similarity,body size and landscape structure

Spatial scaling theory (SST) relates the physical structure of the environment to species coexistence and community assembly. Although SST is a recognized theory in ecology, few studies have evaluated its predictions, producing contradictory results and frequently failing to meet its assumptions. In addition, the ‘risk predictions’ of SST regarding an increase in species similarity with body size and the dependence of this pattern on the landscape and food fractal dimensions have not been evaluated. This study attempted to account for previous limitations, analyzing these predictions in coleopteran guilds that inhabit 18 temporary ponds. This metacommunity covers a large gradient of environmental variables, including food density, the landscape fractal dimension, the food fractal dimensions and other indicators of pond heterogeneity. Average similarity in carnivorous and herbivorous body sizes systematically increased with guild richness, fulfilling classical predictions of niche theory. Species similarity was associated with body size, but the association reverts from negative to positive as the landscape fractal dimension and heterogeneity increases, a pattern further supported by null model analyses. Several nonexclusive mechanisms may account for this pattern: 1) the body size-dependent landscape perception, through which small animals detect more heterogeneity than larger animals; 2) the reaching of landscape limits by larger species, which prevents them from accessing novel largest clusters; 3) the large differences between the landscape and food fractal dimensions; and 4) the homogenization of the landscape when an integer fractal dimension is reached. These mechanisms may dictate that smaller organisms are more able to capitalize on heterogeneity or available resources than larger organisms, thus promoting increased similarity among smaller species. The presented results support the connection between landscape spatial structure and biodiversity and a mechanistic understanding of this connection from the SST.