Vitamin B12-dependent Methionine Synthetase in Photosynthetic Bacteria Partial Purification and Properties

Vitamin B₁₂-dependent methionine synthetase (N⁵-methyItetrahydrofolate-homocysteine Bi2-methyltransferase; EC 2.1.1.13) was partially purified from two different types of photo-synthetic bacteria, Chromatium D and Rhodospirillum rubrum.

Chromatium D, which does not produce vitamin B₁₂, possessed apomethionine synthetase when grown in the absence of the vitamin. Partially purified apoenzyme was converted to holoenzyme efficiently with CH₃B₁₂ or OHB₁₂. Holo-methionine synthetase was purified 244 fold with 56.4 % recovery from Chromatium D cells grown with vitamin B₁₂ added. The partially purified enzyme required reductants but was only partially dependent on S-adenosylmethionine.

On the other hand, Rsp. rubrum methionine synthetase which was always present as holoenzyme, in contrast with that of Chromatium D, was purified 40 fold with 2.8% recovery. The obtained preparation required S-adenosylmethionine and reductants for the enzyme activity. The optimal pH of Chromatium D enzyme and of Rsp. rubrum enzyme was in the range of 7.5~7.8 and 6.5~6.75, respectively.     

Chromatium glycolicum sp. nov., a moderately halophilic purple sulfur bacterium that uses glycolate as substrate

From the microbial mats that develop in Solar Lake, a new purple sulfur bacterium was isolated. This strain (Chromatium strain SL 3201) was morphologically similar to Chromatium gracile and Chromatium minutissimum. Chromatium SL 3201 was found to be a moderate halophile with a growth range between 2 and 20% NaCl (optimum 4–5% NaCl) and was able to grow photo-organotrophically using glycolate and glycerol. It is the first described phototrophic sulfur bacterium able to use glycolate. According to NaCl requirements and utilization of organic compounds, the strain is not related to any known species of the genus Chromatium. On the basis of its 16S rRNA gene sequence, it clusters with other Chromatium species and is most similar to Chromatium salexigens and Chr. gracile, but it is sufficiently separated to be considered as a new species of the genus. It is, therefore, described as Chromatium glycolicum sp. nov. Received: 17 June 1996 / Accepted: 4 November 1996     

Regulation of nitrogenase activity by covalent modification in Chromatium vinosum

Nitrogenase in Chromatium vinosum was rapidly, but reversibly inhibited by NH ₄ ⁺ . Activity of the Fe protin component of nitrogenase required both Mn²⁺ and activating enzyme. Activating enzyme from Rhodospirillum rubrum could replace Chromatium chromatophores in activating the Chromatium Fe protein, and conversely, a protein fraction prepared from Chromatium chromatophores was effective in activating R. rubrum Fe protein. Inactive Chromatium Fe protein contained a peptide covalently modified by a phosphate-containing molecule, which migrated the same in SDS-polyacrylamide gels as the modified subunit of R. rubrum Fe protein. In sum, these observations suggest that Chromatium nitrogenase activity is regulated by a covalent modification of the Fe protein in a manner similar to that of R. rubrum.Abbreviation HEPES N-2-hydroxyethyl piperazine-N-2-ethanesulfonic acid     

Mechanisms of CO2 fixation in bacterial photosynthesis studied by the carbon isotope fractionation technique

1. The carbon isotope discrimination properties of a representative of each of the three types of photosynthetic bacteria Chlorobium thiosulfatophilum, Rhodospirillum rubrum and Chromatium and of the C₃-alga Chlamydomonas reinhardii were determined by measuring the ratio of ¹³CO₂ to ¹²CO₂ incorporated during photoautotrophic growth. 2. Chromatium and R. rubrum had isotope selection properties similar to those of C₃-plants, whereas Chlorobium was significantly different. 3. The results suggest that Chromatium and R. rubrum assimilate CO₂ mainly via ribulose 1,5-diphosphate carboxylase and the associated reactions of the reductive pentose phosphate cycle, whereas Chlorobium utilizes other mechanisms. Such mechanisms would include the ferredoxin-linked carboxylation enzymes and associated reactions of the reductive carboxylic acid cycle.Abbreviations RuDP ribulose 1,5-disphosphate - PEP phosphoenolpyruvate     

Development of a phosphate-removal system using a marine photosynthetic bacterium Chromatium sp.

The marine photosynthetic bacterium Chromatium sp. successfully removed orthophosphate when grown phototrophically. The phosphate-uptake rate was almost constant at more than 5.0 mg- PO₄ ³⁻/l in synthetic medium. Addition of seawater causes flocculation of this strain. The successful use of seawater as an inexpensive source of magnesium could prove to be effective in the removal of photosynthetic bacterial cells from a medium. A semicontinuous culture system was used for the removal of low concentrations of phosphate and the phosphate-uptake activity of Chromatium sp. was maintained under 0.1 day⁻¹ dilution rate. This strain was also able to remove high concentrations of phosphate from domestic sewage. Received 24 May 1996 / Received revision: 5 August 1996 / Accepted: 6 September 1996     

Enzyme activities of the carbon reduction cycle in some photosynthetic organisms

Profile analyses of the enzymes comprising the photosynthetic carbon reduction cycle have been performed in extracts of dark grown and greening Euglena gracilis var. bacillaris. Chlorella pyrenoidosa grown photoautotrophically, in the light with glucose or in the dark with glucose, Tolypothrix tenuis, Chromatium and leaves of spinach. Amounts of activity are compared with the level of photosynthetic CO₂ fixation. Only in Chromatium were all enzyme activities sufficient to support the in vivo rate of CO₂ fixation. In organisms other than Chromatium, some enzymes and particularly fructose 1,6-phosphatase and ribulose 1.5-diphosphate carboxylase appeared to be present in insufficient amounts to support the photosynthetic rate of the intact cell. Developmental studies with Euglena and growth studies with Chlorella led to the conclusion that these enzymes were associated with the cycle. Suppression of CO₂ fixation in heterotrophically grown Chlorella was accompanied by a striking decrease in the same enzymes whose activities increased in greening Euglena.     

On the ATP generation by Chromatium in darkness

Summary In Chromatium strain 6412 storage carbohydrate synthesized in the light, gradually disappeared in the dark. Simultaneously, poly--hydroxybutyric acid (PHB) was produced, CO₂ was released and intracellular elemental sulfur was reduced to sulfide. Expressed on a molar base, the ratio between storage carbohydrate monomer (as glucose) consumed, sulfur reduced, PHB monomer produced, and sulfide released was approximately 1 : 3 : 1 : 3. This indicates that sulfur acts electron acceptor in the conversion of storage carbohydrate to PHB. Assuming that in the dark storage carbohydrate is broken down to pyruvate via the Embden-Meyerhoff pathway, whereafter PHB is synthesized from pyruvate via acetyl-CoA and acetoacetyl-CoA, the conversion of storage carbohydrate to PHB results in a net gain of 3 ATP per glycosyl unit converted. Since Thiorhodaceae are photolithotrophs, these processes would provide the organisms with maintenance energy during dark periods. They also explain motility of Chromatium in the dark.     

The role of sulfhydryl groups in the ribulose- 1,5-bisphosphate carboxylase and oxygenase reactions.

Ribulose-l,5-bisphosphate carboxylase (E.C. 4.1.1.39) isolated from Chromatium strain D contains 64 free cysteinyl -SH groups per mol (M_r 5.11 × 10⁵) as determined using three different titrants: p-[¹⁴C]chloromercuribenzoate, the Ellman reagent, and [¹⁴C]iodoacetamide.Distribution of -SH groups in the two constituent subunits (A and B) isolated from spinach and Chromatium ribulose-1,5-bisphosphate carboxylases was determined to be for spinach, 9 in A and 3 in B; and for Chromatium, 7 in A and 1 in B.The relationship between the numbers of -SH groups blocked vs residual activities of both the ribulose-1,5-bisphosphate carboxylase and oxygenase reactions was examined by titration with p-chloromercuribenzoate. In both spinach and Chromatium enzymes, antisigmoidal curves were obtained for the degree of the enzyme activity loss in relation to the numbers of -SH groups masked. However, at alkaline pH the Chromatium enzyme shows a sharp decline in both carboxylase and oxygenase activities, apparently due to the alkali dissociation of the enzyme molecule accompanied by its structural deformation. The functional role of -SH groups in the ribulose-1,5-bisphosphate carboxylase molecule is discussed in relation to two constituent enzyme reactions, and it is concluded that in both enzyme sources the active sites are probably the same for the two reactions.     

Accumulation of silver by Chromatium vinosum from solutions containing silver thiosulfate

The photosynthetic sulfur bacterium, Chromatium vinosum, was cultured in inorganic photographic processing solutions containing silver thiosulfate complex salt (AgNa₃(S₂O₃)₂) under light. It was found that Chromatium was resistant to Ag and accumulated granular silver in the membrane during growth. The amount of Ag accumulated in the cells depended on the initial concentrations of the Ag salt in the culture solution. When the concentration of Ag was 300 mg/l, the bacteria accumulated Ag as high as 30% of the dry cell weight. The size of the granules was 0.1 to 0.3 m. Results from X-ray microanalysis indicated that these granules consisted mostly of Ag^o with small fractions of Ag₂S and AgCl.     

Utilization of reducing power in growing cultures of Chromatium

Summary The overall composition of cell material in the stationary growth phase of cultures of Chromatium strain 6412 cultivated with sulfide as electron donor is approximately (C₅H₈O₂N). At the moment that sulfide became depleted, 42% had been oxidized to sulfur and 58% to sulfate. Thus at this time 69% of the reducing power initially present had been utilized. However, the amount of structural cell material produced was only 56% of the amount present in the stationary phase of growth. This discrepancy appeared to be due to the accumulation of storage carbohydrate. Storage carbohydrate was synthesized as long as sulfide was available and consumed after sulfide depletion. Increase in structural cell material after sulfide depletion could not be accounted for by CO₂ fixation only, which indicates that storage carbohydrate can be converted into structural cell material. When stationary-phase cultures were again supplied with sulfide, growth was not observable in the first few hours, even though sulfide was oxidized, mainly to sulfur. Under these conditions reducing power was utilized for the synthesis of storage carbohydrate from CO₂.     

On the mechanism of glycolate synthesis by Chromatium and Chlorella

When cultures of the photosynthetic bacterium, Chromatium vinosum, capable of photosynthesizing glycolate at about 10 μmol/mg of bacteriochlorophyll/h were exposed to atmospheres enriched with ¹⁸O₂, one atom of oxygen-18 was incorporated into the car?yl group of glycolate. Allowing for the small (3–5%) loss of oxygen-18 during the manipulations leading up to the mass spectrometric determination of the oxygen-18 content of the glycolate, the isotopic enrichment of the¹⁸O-labeled glycolate synthesized by Chromatium was substantially (at least 94%) the same as the isotopic enrichment of the ¹⁸O₂. Similar results were obtained with the green alga, Chlorella fusca. The close agreement between the isotopic enrichments of the glycolate and the oxygen with which it was synthesized was independent of the oxygen concentration. The major pathway of glycolate synthesis by Chromatium therefore involves reaction(s) which bring about the incorporation of one atom of molecular oxygen into the car?yl group of glycolate. The in vitro rate of ribulose 1,5-bisphosphate oxygenase in extracts of Chromatium, previously thought to be too low to account for the rates of glycolate synthesis in vivo, was shown to be adequate for this purpose when precautions were taken to fully activate the enzyme. Similarly, the activity of phosphoglycolate phosphatase, when assayed under optimal conditions, was also adequate to sustain the rates of glycolate formation observed i vivo. It is concluded that the oxygenolytic cleavage of ribulose 1,5-bisphosphate represents the major pathway of glycolate synthesis by Chromatium.     

The reductive enzymatic cleavage of thiosulfate

Summary Methods presently used for the enzymatic assay of the thiosulfate cleaving reaction in bacterial cell-free systems are critically examined. Conditions under which strong acids are used to terminate the reaction and to release H₂S proved to be unsuitable. A non-enzymatic production of H₂S under such conditions is demonstrated. A reliable procedure for the measurement of H₂S production from the enzymatic cleavage of thiosulfate is described. This method was used to measure the thiosulfate cleaving reaction catalyzed by cell-free extracts of phototrophic bacteria of the genusChromatium. As reductants, hydrogen-hydrogenase/methyl viologen system, reduced glutathione or dihydrolipoate were used. The same extract fraction catalyzed the rhodanese reaction.     

Natural Occurrence and Backwater Infection of C4 Plants in the Vegetation of the Yangtze Hydropower Three Gorges Project Region

Natural occurrence of C₄ species, life form, altitude pattern, and infection by the Three Gorges Project (TGP) were studied in the TGP region. 76 species (about 2.5 % of the total 2 685 vascular plant species in the region), in 6 families and 42 genera, were identified with C₄ photosynthesis. 91 % of these C₄ species belong to Monocotyledoneae, e.g. Cyperaceae (14 species), Gramineae (54 species), and Commelinaceae (1 species). Of these C₄ species, Gramineae was the leading C₄ family: 54 C₄ grass species (71 % of the total C₄ species), about 36 % of the total grasses, were identified in the TGP region. 98 % C₄ species was found in therophyte (55 %) and hemicryptophyte (43 %). This is consistent with high grass and sedge compositions in the region. Most habitats of more than a half of these C₄ species (65 %) will be submerged permanently, but no species will be endangered or extinct, because 95 % C₄ species can be found from 500 to 800 m above sea level. The abundance of some C₄ species will be dropped due to the reduction of distribution scope. It will take a long-term to explore the effects of the TGP on plants, vegetation, and environment.     

Growth measurements of Chromatium cultures

Summary The optical density of Chromatium cultures grown anaerobically in the light with sulfide as electron donor is mainly determined by the sulfur content of the cells. Since the sulfur content varies, growth cannot be followed in this way. However, optical density measurements are very useful to characterize the moment of sulfide depletion and maximal sulfur storage. In addition to protein or cell nitrogen, increase in structural cell material in growing cultures of Chromatium can easily be followed by bacteriochlorophyll determinations, provided that the illumination intensity is higher than the saturation intensity.     

Sulfur metabolism in Thiorhodaceae. V. Enzymes of sulfur metabolism inThiocapsa floridana andChromatium species

In extracts ofThiocapsa floridana strain 6311 andChromatium strains 1611, 2811 and 6412 a high specific activity of adenosine 5-phosphosulfate reductase was found. In contrast, little activity of this enzyme was found inChromatium strain D.Adenosine 5-diphosphate sulfurylase is present in extracts fromThiocapsa floridana strain 6311. The enzyme appears to be involved in the oxidation of reduced sulfur compounds to sulfate.Sulfite oxidase could not be demonstrated in any of the strains examined.     

Effect of water content and temperature on seed longevity of seven Brassicaceae species after 5 years of storage

Maximising seed longevity is crucial for genetic resource preservation and longevity of orthodox seeds is determined by environmental conditions (water content and temperature). The effect of water content (down to 0.01 g·H₂O·g^?1) on seed viability was studied at different temperatures for a 5‐year storage period in taxonomically related species. Seeds of seven Brassicaceae species (Brassica repanda, Eruca vesicaria, Malcolmia littorea, Moricandia arvensis, Rorippa nasturtium‐aquaticum, Sinapis alba, Sisymbrium runcinatum) were stored at 48 environments comprising a combination of eight water contents, from 0.21 to 0.01 g·H₂O·g^?1 DW and six temperatures (45, 35, 20, 5, ?25, ?170 °C). Survival curves were modelled and P50 calculated for those conditions where germination was reduced over the 5‐year assay period. Critical water content for storage of seeds of six species at 45 °C ranged from 0.02 to 0.03 g·H₂O·g^?1. The effect of extreme desiccation at 45 °C showed variability among species: three species showed damaging effects of drying below the critical water content, while for three species it was neither detrimental nor beneficial to seed longevity. Lipid content could be related to longevity, depending on the storage conditions. A variable seed longevity response to water content among taxonomically related species was found. The relative position of some of the species as long‐ or short‐lived at 45 °C varied depending on the humidity at which storage behaviour was evaluated. Therefore, predictions of survival under desiccated conditions based on results obtained at high humidity might be problematic for some species.     

Sulphur metabolism in Thiorhodaceae. III. Storage and turnover of thiosulphate sulphur inThiocapsa floridana andChromatium species

Thiocapsa floridana strain 1711 andChromatium strains 1211 and 1611 utilize sulphide, thiosulphate, and elementary sulphur as electron donors for growth; sulphite can be used only byChromatium strain 1611. In contrast to the other strains, thiosulphate utilization inChromatium strain 1211 is inducible and not constitutive: thiosulphate is consumed only after an induction period of about 20 hours. The turnover rate of different sulphur compounds is controlled by the CO₂ fixation rate. Using differently labeled³⁵S thiosulphates in short term experiments in a special stirred cuvette, it was shown that the maximum amount of stored intracellular sulphur depends on the strain as well as on the experimental conditions like pH and thiosulphate concentration. WhileChromatium strain 1211 showed a maximum storage of only 10% from sulphane-labeled thiosulphate at pH 6.7, and of 25.7% at pH 6.2,Thiocapsa floridana accumulated 75–90% of the radioactivity into the cells at pH 6.7. While in theChromatium strains the labeling of the cells remained at a constant level until all thiosulphate was consumed, inThiocapsa floridana a defined peak of radioactivity storage was obtained, followed by a steady but 3–4 times slower rate of excretion. With sulphonelabeled thiosulphate no significant accumulation of radioactivity occurred in the cells. During dark-incubation ofThiocapsa floridana (free of intracellular sulphur) in phosphate buffer, pH 6.5, with thiosulphate a production of sulphide could be measured while sulphite was not detected; no sulphide was produced by disrupted cells under the same conditions. The results obtained withThiocapsa floridana strongly support the concept of an initial cleavage of thiosulphate. The present observations do not allow a decision concerning the enzymatic mechanism of the cleavage itself.     

Nitrogen fixation and photoproduction of molecular hydrogen by Thiorhodaceae

Summary Nitrogen fixation has been shown to be a characteristic of two previously untested strains of the purple sulfur bacteriumChromatium sp.Chromatium strains have been shown to produce molecular hydrogen when suppliedD-L malate and bicarbonate in the presence of light and the absence of exogenous ammonia and molecular nitrogen. These results are discussed in relation to current findings on the nitrogen metabolism of the photosynthetic bacteria. Supported in part by grants from the Rockefeller Foundation, the Atomic Energy Commission, and the Research Committee of the Graduate School from funds provided by the Wisconsin Alumni Research Foundation.     

Variation of environmental features and microbial populations with salt concentrations in a multi-pond saltern

A multi-pond saltern that creates a gradient of salt concentrations has been studied with respect to some characteristics of the resulting environments and their microbial populations. The increase in salt concentration was correlated with increase in diurnal temperature and biomass present and with decrease in oxygen concentrations. Many types of organisms below 15% (w/v) total salts, were found, many of them normal inhabitants of seawater and even freshwater. Most organisms over 15% salts were halophilic. The salt concentrations comprised two ranges, each characterized by different microbial populations. First, between 15 and 30% salts, the populations ofDunaliella increased, reaching large numbers; moderately halophilic eubacteria and some fast-growing halobacteria predominated as heterotrophic microorganisms and, among the first, thePseudomonas-Alteromonas-Alcaligenes group andVibrio were the more abundant taxonomic groups; and gram-positive cocci appeared mainly over 25% salts. Phototrophic bacteria, both oxygenic and anoxygenic, were also found in this range, and among the anoxygenic type,Chromatium species andRodospirillum salexigens were probably predominant. Second, over 30% salts the diversity decreased greatly, all organisms found at the lower salt concentrations disappeared, and instead large populations of halobacteria developed. Over 50% salts, only three species of halobacteria were found.     

Mechanism of inhibition of Chromatium D growth by L-methionine regulation of L-threonine biosynthesis by the intracellular level of S-adenosylmethionine

1. (1) An unusual accumulation of S-adenosyl-L-methionine in Chromatium D was associated with a marked growth inhibition by L-methionine. The inhibition was overcome by L-isoleucine, L-leucine, L-phenylalanine, L-threonine, L-valine and putrescine. Based on their effects, these compounds are classified into 3 types.

2. (2) L-Isoleucine, L-leucine, L-phenylalanine and L-valine (Type I) inhibited the L-methionine uptake and consequently prevented the bacterium from the unusual accumulation of S-adenosyl-L-methionine even in the presence of L-methionine in the medium. Putrescine (Type II) stimulated the consumption of S-adenosyl-L-methionine, but did not influence the L-methionine uptake. Hence, the effect of putrescine would be explained by the action to diminish the intracellular level of S-adenosyl-L-methionine. L-Threonine (Type III) neither inhibited the L-methionine uptake nor affected the content of S-adenosyl-L-methionine due to the addition of L-methionine.

3. (3) The specific activity of homoserine kinase (EC 2.7.1.39) was greatly lowered by the addition of L-methionine under conditions in which Chromatium D unusually accumulates S-adenosyl-L-methionine. Homoserine dehydrogenase (EC 1.1.1.3) activity was inhibited by S-adenosyl-L-methionine (50% inhibition index, 3.5 mM). These facts strongly suggest that the growth inhibition by L-methionine is associated with the L-threonine deficiency caused by the unusual accumulation of S-adenosyl-L-methionine.