Population structure and residency of whale sharks Rhincodon typus at Utila,Bay Islands,Honduras

There were 479 reported whale shark Rhincodon typus encounters between 1999 and 2011 at the island of Utila, which forms part of the Meso‐American Barrier Reef System (MBRS) in the western Caribbean Sea. The majority of R. typus were found to feed on small bait fish associated with various tuna species. Ninety‐five individual R. typus, ranging from 2 to 11 m total length (L_T), were identified through their unique spot patterns. A significant male bias (65%) was present. There was no significant difference between the mean ± s.d . L_T of female (6·66 ± 1·65 m) and male (6·25 ± 1·60 m) R. typus. Most R. typus were transient to Utila, with 78% sighted only within a single calendar year, although some individuals were sighted in up to 5 years. Mean residency time was modelled to be 11·76 days using maximum likelihood methods.     

Distribution and feeding habitat characterization of whale sharks Rhincodon typus in a protected area in the north Caribbean Sea

The relationship between the distribution of the whale shark Rhincodon typus and hydrobiological variables in the Caribbean Sea during 2005–2009 was analysed. Monthly trips were made to the R. typus aggregation area during the months when this species is present in the region (May to September) to record sightings and hydrological data and to collect samples to determine nutrients, chlorophyll a (Chl a) and zooplankton biomass. A total of 2104 R. typus were counted and three zones of high abundance were identified: Cabo‐Catoche, Contoy (both within the Whale Shark Biosphere Reserve, WSBR) and the zone knows as Afuera. The zones of greatest R. typus density within the WSBR were characterized by high Chl a concentrations (median: 1·1 mg m^?3, interpercentile range: 0·5–1·8 mg m^?3) and high nutrient concentrations, such as ammonium (median: 2·5 µmol l^?1, interpercentile range: 0·5–6·4 µmol l^?1), due to the influence of local upwelling. A generalized additive model (GAM) was used to explore the relationship between R. typus distribution and the environmental variables inside WSBR. Zooplankton biomass was the most influential environmental variable, supporting the close relationship between R. typus distribution and biological productivity. Copepods were the dominant zooplankton group within the WSBR. In the Afuera zone, there were large R. typus aggregations (>80 individuals) associated with zooplankton dominated by fish eggs and significantly higher mean ± s.d. biomass (3356·1 ± 1960·8 mg m^?3) compared with that recorded inside the WSBR (103·5 ± 57·2 mg m^?3). The differences among zones generated changes in R. typus distribution patterns and provided opportunities to develop local management strategies for this species.     

Do they stay or do they go? Acoustic monitoring of whale sharks at Ningaloo Marine Park,Western Australia

Whale sharks Rhincodon typus were monitored via acoustic transmitters at the northern end of Western Australia's Ningaloo Marine Park to establish the extent to which the species inhabits the region beyond the whale‐shark ecotourism industry season, which usually extends from March to August in each year. Despite the vast majority (c. 98%) of photographic submissions of R. typus from Ningaloo Reef being between March and August, acoustic detections from the tagged R. typus at Ningaloo were recorded in all months of the year, but do not preclude the occurrence of extended absences. It is concluded that as a species, R. typus occurs year round at Ningaloo, where it generally remains in close proximity to the reef edge, but that some individuals move outside of the detection range of the array for extended periods.     

Inferred global connectivity of whale shark Rhincodon typus populations

Ten years have passed since the last synopsis of whale shark Rhincodon typus biogeography. While a recent review of the species' biology and ecology summarized the vast data collected since then, it is clear that information on population geographic connectivity, migration and demography of R. typus is still limited and scattered. Understanding R. typus migratory behaviour is central to its conservation management considering the genetic evidence suggesting local aggregations are connected at the generational scale over entire ocean basins. By collating available data on sightings, tracked movements and distribution information, this review provides evidence for the hypothesis of broad‐scale connectivity among populations, and generates a model describing how the world's R. typus are part of a single, global meta‐population. Rhincodon typus occurrence timings and distribution patterns make possible a connection between several aggregation sites in the Indian Ocean. The present conceptual model and validating data lend support to the hypothesis that R. typus are able to move among the three largest ocean basins with a minimum total travelling time of around 2–4 years. The model provides a worldwide perspective of possible R. typus migration routes, and suggests a modified focus for additional research to test its predictions. The framework can be used to trim the hypotheses for R. typus movements and aggregation timings, thereby isolating possible mating and breeding areas that are currently unknown. This will assist endeavours to predict the longer‐term response of the species to ocean warming and changing patterns of human‐induced mortality.     

Age and growth parameters of shark‐like batoids

Estimates of life‐history parameters were made for shark‐like batoids of conservation concern Rhynchobatus spp. (Rhynchobatus australiae, Rhynchobatus laevis and Rhynchobatus palpebratus) and Glaucostegus typus using vertebral ageing. The sigmoid growth functions, Gompertz and logistic, best described the growth of Rhynchobatus spp. and G. typus, providing the best statistical fit and most biologically appropriate parameters. The two‐parameter logistic was the preferred model for Rhynchobatus spp. with growth parameter estimates (both sexes combined) L_∞ = 2045 mm stretch total length, L_ST and k = 0·41 year^?1. The same model was also preferred for G. typus with growth parameter estimates (both sexes combined) L_∞ = 2770 mm L_ST and k = 0·30 year^?1. Annual growth‐band deposition could not be excluded in Rhynchobatus spp. using mark‐recaptured individuals. Although morphologically similar G. typus and Rhynchobatus spp. have differing life histories, with G. typus longer lived, slower growing and attaining a larger maximum size.     

Scarring patterns and relative mortality rates of Indian Ocean whale sharks

This study recorded the scarring rate and severity for whale sharks Rhincodon typus from three Indian Ocean aggregations (Australia, Seychelles and Mozambique), and examined whether scarring (mostly attributed to boat strikes and predator attacks) influences apparent survival rates using photo‐identification libraries. Identifications were based on spot‐and‐stripe patterns that are unique to individual whale sharks. Scarring was most prevalent in the Seychelles aggregation (67% of individuals). Predator bites were the most frequent source of scarring (aside from minor nicks and abrasions) and 27% of individuals had scars consistent with predator attacks. A similar proportion of whale sharks had blunt trauma, laceration and amputation scars, the majority of which appeared to be caused by ship collisions. Predator bites were more common (44% of individuals) and scars from ship collisions were less common at Ningaloo Reef than at the other two locations (probability of among‐site differences occurring randomly = 0·0007 based on a randomized multinomial contingency analysis). In all aggregations, scars occurred most often on the caudal fin, which may result from the fin being the body part closest to the surface when boats pass over, or they may provide a large target for predator attack. No evidence was found for an effect of scarring on apparent survival (φ; mean ±s .e .) for the Ningaloo (not scarred φ= 0·858 ± 0·033; scarred φ= 0·929 ± 0·033) or Seychelles populations (not scarred φ= 0·502 ± 0·060; scarred φ= 0·538 ± 0·070). The lower apparent survival of the Seychelles population may be attributed to a high number of transient whale sharks in this aggregation that might bias estimates. This study indicates that while scarring from natural predators and smaller vessels appears to be unrelated to whale shark survival, the effect of deaths related to ship strike need to be quantified to assist in future management of this species.     

Comparison of the lateral line and ampullary systems of two species of shovelnose ray

The anatomical characteristics of the mechanoreceptive lateral line system and electrosensory ampullae of Lorenzini of Rhinobatos typus and Aptychotrema rostrata are compared. The spatial distribution of somatic pores of both sensory systems is quite similar, as lateral line canals are bordered by electrosensory pore fields. Lateral line canals form a sub-epidermal, bilaterally symmetrical net on the dorsal and ventral surfaces; canals contain a nearly continuous row of sensory neuromasts along their length and are either non-pored or pored. Pored canals are connected to the surface through a single terminal pore or additionally possess numerous tubules along their length. On the dorsal surface of R. typus, all canals of the lateral line occur in the same locations as those of A. rostrata. Tubules branching off the lateral line canals of R. typus are ramified, which contrasts with the straight tubules of A. rostrata. The ventral prenasal lateral line canals of R. typus are pored and possess branched tubules in contrast to the non-pored straight canals in A. rostrata. Pores of the ampullae of Lorenzini are restricted to the cephalic region of the disk, extending only slightly onto the pectoral fins in both species. Ampullary canals penetrate subdermally and are detached from the dermis. Ampullae occur clustered together, and can be surrounded by capsules of connective tissue. We divided the somatic pores of the ampullae of Lorenzini of R. typus into 12 pore fields (10 in A. rostrata), corresponding to innervation and cluster formation. The total number of ampullary pores found on the ventral skin surface of R. typus is approximately six times higher (four times higher in A. rostrata) than dorsally. Pores are concentrated around the mouth, in the abdominal area between the gills and along the rostral cartilage. The ampullae of both species of shovelnose ray are multi-alveolate macroampullae, sensu Andres and von Düring (1988). Both the pore patterns and the distribution of the ampullary clusters in R. typus differ from A. rostrata, although a basic pore distribution pattern is conserved.     

Acoustic telemetry reveals cryptic residency of whale sharks

Although whale sharks (Rhincodon typus) have been documented to move thousands of kilometres, they are most frequently observed at a few predictable seasonal aggregation sites. The absence of sharks at the surface during visual surveys has led to the assumption that sharks disperse to places unknown during the long ‘off-seasons’ at most of these locations. Here we compare 2 years of R. typus visual sighting records from Mafia Island in Tanzania to concurrent acoustic telemetry of tagged individuals. Sightings revealed a clear seasonal pattern with a peak between October and February and no sharks observed at other times. By contrast, acoustic telemetry demonstrated year-round residency of R. typus. The sharks use a different habitat in the off-season, swimming deeper and further away from shore, presumably in response to prey distributions. This behavioural change reduces the sharks'' visibility, giving the false impression that they have left the area. We demonstrate, for the first time to our knowledge, year-round residency of unprovisioned, individual R. typus at an aggregation site, and highlight the importance of using multiple techniques to study the movement ecology of marine megafauna.     

Whale shark Rhincodon typus strandings in the Gulf of California,Mexico

The present study analyses whale shark Rhincodon typus stranding in the Gulf of California, Mexico, reported by the public, scientists, authorities and artisanal fishermen. A total of 14 strandings were documented during the period 2001–2018. The total length of R. typus ranged from 350–1,102 cm, with a sex ratio of 3.5:1 (males: females). This study highlights potential stranding areas, the need for better stranding protocols to assist R. typus recovery and the importance of samples from dead animals for scientific research.     

Spatial ecology of shark-like batoids in a large coastal embayment

Understanding how spatial ecology varies between life stages, and whether there is an overlap of critical areas (e.g., nursery areas, breeding sites), may provide significant benefits to conservation planning. The present work examined the space use and residency of shark-like batoids (families Rhynchobatidae and Rhinobatidae) in a nearshore system. An array of 63 acoustic receivers deployed in Cleveland Bay, north Queensland, Australia, passively tracked 15 G. typus and 20 Rhynchobatus spp. between 2009 and 2011. Glaucostegus typus were monitored between 1 and 766 days (mean?=?333?±?69 days) and were present in the site from 1 to 198 days (mean 73?±?25 days). Both adult male and female G. typus exhibited philopatric behaviour patterns, leaving the bay and returning after periods of about 9–12 months to use the same areas where they were detected in previous years. Individuals with lower residency had larger activity spaces. Rhynchobatus spp. were monitored for 1 to 707 days (mean?=?231?±?50 days) and were present in the site from 1 to 350 days (mean 82?±?24 days). Rhynchobatus spp. exhibited no synchronicity in use of the bay. Both G. typus male and female residency changed with size of individuals, in comparison size had no effect on the residency of Rhynchobatus spp. The present study improves our understanding of shark-like batoid spatial ecology in nearshore waters and may provide useful information for the management of these populations.     

Movement Patterns of Juvenile Whale Sharks Tagged at an Aggregation Site in the Red Sea

Conservation efforts aimed at the whale shark, Rhincodon typus, remain limited by a lack of basic information on most aspects of its ecology, including global population structure, population sizes and movement patterns. Here we report on the movements of 47 Red Sea whale sharks fitted with three types of satellite transmitting tags from 2009–2011. Most of these sharks were tagged at a single aggregation site near Al-Lith, on the central coast of the Saudi Arabian Red Sea. Individuals encountered at this site were all juveniles based on size estimates ranging from 2.5–7 m total length with a sex ratio of approximately 1∶1. All other known aggregation sites for juvenile whale sharks are dominated by males. Results from tagging efforts showed that most individuals remained in the southern Red Sea and that some sharks returned to the same location in subsequent years. Diving data were recorded by 37 tags, revealing frequent deep dives to at least 500 m and as deep as 1360 m. The unique temperature-depth profiles of the Red Sea confirmed that several whale sharks moved out of the Red Sea while tagged. The wide-ranging horizontal movements of these individuals highlight the need for multinational, cooperative efforts to conserve R. typus populations in the Red Sea and Indian Ocean.     

A new record of whale shark Rhincodon typus in Brazilian waters: a report of association with Caranx crysos

In May 2011, a Rhincodon typus was sighted on the continental shelf of the central Brazilian coast, in the vicinity of a gas platform. During the video record, an interspecific following association was observed between a Caranx crysos school and the R. typus.     

Association of the whale shark Rhincodon typus with the cannonball jellyfish Stomolophus meleagris

This study describes the first record of the whale shark Rhincodon typus association with the cannonball jellyfish Stomolophus meleagris in the Gulf of California, Mexico. Whale sharks were observed swimming and feeding among swarms of jellyfish, suggesting competition and predatory behaviour given the overlap in food preferences between both species. This finding is relevant because of the species‐wide distribution and the importance of these interactions, which should be considered in conservation strategies of R. typus and management of cannonball jellyfish fisheries.     

Estimating tissue‐specific discrimination factors and turnover rates of stable isotopes of nitrogen and carbon in the smallnose fanskate Sympterygia bonapartii (Rajidae)

This study aimed to estimate trophic discrimination factors (TDFs) and metabolic turnover rates of nitrogen and carbon stable isotopes in blood and muscle of the smallnose fanskate Sympterygia bonapartii by feeding six adult individuals, maintained in captivity, with a constant diet for 365 days. TDFs were estimated as the difference between δ¹³C or δ¹⁵N values of the food and the tissues of S. bonapartii after they had reached equilibrium with their diet. The duration of the experiment was enough to reach the equilibrium condition in blood for both elements (estimated time to reach 95% of turnover: C t95%_blood = 150 days, N t95%_blood = 290 days), whilst turnover rates could not be estimated for muscle because of variation among samples. Estimates of Δ¹³C and Δ¹⁵N values in blood and muscle using all individuals were Δ¹³C_blood = 1·7‰, Δ¹³C_muscle = 1·3‰, Δ¹⁵N_blood = 2·5‰ and Δ¹⁵N_muscle = 1·5‰, but there was evidence of differences of c.0·4‰ in the Δ¹³C values between sexes. The present values for TDFs and turnover rates constitute the first evidence for dietary switching in batoids based on long‐term controlled feeding experiments. Overall, the results showed that S. bonapartii has relatively low turnover rates and isotopic measurements would not track seasonal movements adequately. The estimated Δ¹³C values in S. bonapartii blood and muscle were similar to previous estimations for elasmobranchs and to generally accepted values in bony fishes (Δ¹³C = 1·5‰). For Δ¹⁵N, the results were similar to published reports for blood but smaller than reports for muscle and notably smaller than the typical values used to estimate trophic position (Δ¹⁵N c. 3·4‰). Thus, trophic position estimations for elasmobranchs based on typical Δ¹⁵N values could lead to underestimates of actual trophic positions. Finally, the evidence of differences in TDFs between sexes reveals a need for more targeted research.     

Site fidelity and association patterns of Indo-Pacific humpback dolphins off the east coast of Zhanjiang,China

This study examined the population of Indo-Pacific humpback dolphins, Sousa chinensis, inhabiting the waters off the east coast of Zhanjiang, China. A total of 116 dolphins were identified during 147 boat-based surveys, completed between June 2005 and June 2007. Abundance estimates indicated that a small population of 268 dolphins (95% CI = 189–413) inhabited this coastal area. The sighting frequencies of identified dolphins varied between one and five when the 2006 and 2007 data were organized into six occasions. Twenty-three percent (27 individuals) of the cataloged dolphins were identified in more than one calendar year. The two animals (ZJ001, ZJ011) with the highest degree of site fidelity were present in the study area for a period of 23 months. The most frequently (15 times) sighted dolphin (ZJ046) was recorded in nine (56%) of the 16 months surveyed. This evidence indicates the interannual site fidelity of S. chinensis to the area off the eastern coast of Zhanjiang City. Range sizes of eight identified individuals calculated by the minimum convex polygon varied from 2.07 to 331.20 km². Associations between 34 individuals sighted at least three times and more than three times were measured by the half-weight index and SOCPROG program. The majority of these dolphins (80.57%) were not seen together during surveys and the mean association rate between dyads was low at 0.05. Temporal analyses for all the individuals were conducted using a lagged association rate. The results indicated a non-random social structure made by constant companions.     

Population ecology and the management of whale watching operations on a data‐deficient dolphin population

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Spatial density estimates of Eurasian lynx (Lynx lynx) in the French Jura and Vosges Mountains

Obtaining estimates of animal population density is a key step in providing sound conservation and management strategies for wildlife. For many large carnivores however, estimating density is difficult because these species are elusive and wide‐ranging. Here, we focus on providing the first density estimates of the Eurasian lynx (Lynx lynx) in the French Jura and Vosges mountains. We sampled a total of 413 camera trapping sites (with two cameras per site) between January 2011 and April 2016 in seven study areas across seven counties of the French Jura and Vosges mountains. We obtained 592 lynx detections over 19,035 trap days in the Jura mountains and 0 detection over 6,804 trap days in the Vosges mountains. Based on coat patterns, we identified a total number of 92 unique individuals from photographs, including 16 females, 13 males, and 63 individuals of unknown sex. Using spatial capture–recapture (SCR) models, we estimated abundance in the study areas between 5 (SE = 0.1) and 29 (0.2) lynx and density between 0.24 (SE = 0.02) and 0.91 (SE = 0.03) lynx per 100 km². We also provide a comparison with nonspatial density estimates and discuss the observed discrepancies. Our study is yet another example of the advantage of combining SCR methods and noninvasive sampling techniques to estimate density for elusive and wide‐ranging species, like large carnivores. While the estimated densities in the French Jura mountains are comparable to other lynx populations in Europe, the fact that we detected no lynx in the Vosges mountains is alarming. Connectivity should be encouraged between the French Jura mountains, the Vosges mountains, and the Palatinate Forest in Germany where a reintroduction program is currently ongoing. Our density estimates will help in setting a baseline conservation status for the lynx population in France.     

Sex identification and PIT‐tagging: tools and prospects for studying intersexual differences in freshwater fishes

This study evaluated a technique to allow the long‐term monitoring of individual fishes of known sex in the wild using sex confirmation in close proximity to the reproductive period combined with individual tagging. Hundreds of partially migratory roach Rutilus rutilus were tagged with passive integrated transponders (PIT) following sex determination in spring and various performance measures were compared with fish tagged outside the reproductive period in autumn. Short‐term survival was >95% for R. rutilus sexed and tagged under natural field conditions. Total length (L_T) did not affect the probability of survival within the size range tagged (119–280 mm), nor were there differences in timing of migration the following season between individuals sexed and tagged in spring and individuals tagged in autumn (i.e. outside the reproductive period). Also, a similar per cent of R. rutilus sexed and tagged in spring and tagged in autumn migrated the following season (34·5 and 34·7%). Moreover, long‐term recapture data revealed no significant differences in body condition between R. rutilus individuals sexed and tagged in spring, individuals tagged in autumn and unmanipulated individuals. The observed sex ratio of recaptured fish did not differ from the expected values of equal recapture rates between males and females. Hence, there is no observable evidence for an adverse effect of tagging close to the reproductive period and therefore this method is suitable for studying intersexual differences and other phenotypic traits temporarily expressed during reproduction at the individual level in fishes.     

Balancing bias and precision in capture-recapture estimates of abundance

Capture‐recapture estimates of abundance using photographic identification data are sensitive to the quality of photographs used and distinctiveness of individuals in the population. Here analyses are presented for examining the effects of photographic quality and individual animal distinctiveness scores and for objectively selecting a subset of data to use for capture‐recapture analyses using humpback whale (Megaptera novaeangliae) data from a 2‐year study in the North Atlantic. Photographs were evaluated for their level of quality and whales for their level of individual distinctiveness. Photographic quality scores had a 0.21 probability of changing by a single‐quality level, and there were no changes by two or more levels. Individual distinctiveness scores were not independent of photographic quality scores. Estimates of abundance decreased as poor‐quality photographs were removed. An appropriate balance between precision and bias in abundance estimates was achieved by removing the lowest‐quality photographs and those of incompletely photographed flukes given our assumptions about the true population abundance. A simulation of the selection process implied that, if the estimates are negatively biased by heterogeneity, the increase in bias produced by decreasing the sample size is not more than 2%. Capture frequencies were independent of individual distinctiveness scores.     

Protein polymorphism inEligmodontia typus. Genetic divergence with other phyllotine cricetids

By means of gel electrophoresis of tissue extracts we have studied protein polymorphism inEligmodontia typus. The analysis was performed on specimens from five population samples collected at different sites in Patagonia (Argentina). Mean heterozygosity (\-h) and proportion of polymorphic loci (P) were determined on the basis of 19 loci. Considering all individuals as one sample, \-h gave a value of 0.16 and P was 70%. Although these values are much higher than those reported for most rodent species, they are very similar to those obtained by us for four species of the genusCalomys and forGraomys griseoflavus. There is a striking genetic identity (I_N=0.99) among populations from regions with different environmental conditions, indicating that the species possesses a common genic pool. Genetic distance with other species of the Phyllotini was estimated. D_N was lower betweenE. typus andCalomys (mean D_N=0.88) than betweenE. typus andGraomys griseoflavus (D_N=1.01). The high morphological similarity between these last two species, especially regarding those characters related to desert life adaptation, could be assigned, at least in part, to convergent evolution.