The Principles of Buoyancy in Marine Fish Eggs and Their Vertical Distributions across the World Oceans

Buoyancy acting on plankton, i.e. the difference in specific gravity between plankton and the ambient water, is a function of salinity and temperature. From specific gravity measurements of marine fish eggs salinity appears to be the only determinant of the buoyancy indicating that the thermal expansions of the fish egg and the ambient seawater are equal. We analyze the mechanisms behind thermal expansion in fish eggs in order to determine to what extent it can be justified to neglect the effects of temperature on buoyancy. Our results confirm the earlier assumptions that salinity is the basic determinant on buoyancy in marine fish eggs that, in turn, influence the vertical distributions and, consequently, the dispersal of fish eggs from the spawning areas. Fish populations have adapted accordingly by producing egg specific gravities that tune the egg buoyancy to create specific vertical distributions for each local population. A wide variety of buoyancy adaptations are found among fish populations. The ambient physical conditions at the spawning sites form a basic constraint for adaptation. In coastal regions where salinity increases with depth, and where the major fraction of the fish stocks spawns, pelagic and mesopelagic egg distributions dominate. However, in the larger part of worlds’ oceans salinity decreases with depth resulting in different egg distributions. Here, the principles of vertical distributions of fish eggs in the world oceans are presented in an overarching framework presenting the basic differences between regions, mainly coastal, where salinity increases with depth and the major part of the world oceans where salinity decreases with depth. We show that under these latter conditions, steady-state vertical distribution of mesopelagic fish eggs cannot exist as it does in most coastal regions. In fact, a critical spawning depth must exist where spawning below this depth threshold results in eggs sinking out of the water column and become lost for recruitment to the population. An example of adaptation to such conditions is Cape hake spawning above the critical layer in the Northern Benguela upwelling ecosystem. The eggs rise slowly in the onshore subsurface current below the Ekman layer, hence being advected inshore where the hatched larvae concentrate with optimal feeding conditions.     

The Horizontal Distribution of Baltic Epi- and Metalimnic Zooplankton Species

The horizontal distribution of epi- and metalimnic zooplankton species in the northern region of the Bothnian Sea was studied in July and August 1975. The distribution was determined by vertical sampling with plankton nets at randomly selected stations in two areas (4 and 8 km²). Most species were clearly nonrandomly distributed in these two sampling areas. Horizontal patchiness within areas of a few km² could be shown by grouping closely adjacent stations according to similarity or difference in average values. At the individual stations, there were only a few cases where any marked deviations from randomness were found. The age distributions of copepods differed in different parts of the areas. This is thought to be an important factor for the creation of patchiness.     

Identifying hotspots for biodiversity management using rank abundance distributions

Aim Identification of biodiversity hotspots has typically relied on species richness. We extend this approach to include prediction to regional scales of other attributes of biodiversity based on the prediction of Rank Abundance Distributions (RADs). This allows us to identify areas that have high numbers of rare species and areas that have a rare assemblage structure. Location Continental slope and shelf of south‐western Australia, between 20.5 and 30° S and depths of 100–1500 m. Methods We use a recently developed method to analyse RADs from biological surveys and predict attributes of RADs to regional scales from spatially abundant physical data for demersal fish and invertebrates. Predictions were made for total abundance (N), species richness (S) and relative evenness at 147,996 unsampled locations using data from two spatially limited surveys. The predictions for S and relative evenness were then independently split into categories, creating a bivariate distribution. The RAD categories are mapped spatially between 20.5 and 30° S to depths of 1500 m to allow identification of areas with rare species and assemblage structure across this region. Results Rank abundance distributions for demersal fish vary with large scale oceanographic patterns. Peaks in abundance and unevenness are found on the shelf break. The bivariate distributions for richness and evenness for both fish and invertebrates show that all assemblage structures are not equally likely. The RAD categories identify regions that have high numbers of rare species and areas with unique assemblage structure. Main conclusions Predicted RADs over large regions can be used to identify biodiversity hotspots in more detail than richness alone. Areas of rare species and rare assemblage structure identified from fish and invertebrates largely overlap, despite the underlying data coming from two different data sets with two different collection methods. This approach allows us to target conservation management at species that would otherwise be missed.     

Predicted and verified distributions of <Emphasis Type="Italic">Ateles geoffroyi</Emphasis> and <Emphasis Type="Italic">Alouatta palliata</Emphasis> in Oaxaca,Mexico

Primate conservation requires a better knowledge of the distributions and statuses of populations in both large areas of habitat and in areas for which we currently have no information. We focused on spider monkeys (Ateles geoffroyi) and howler monkeys (Alouatta palliata) in the state of Oaxaca, Mexico. This Mexican state has protected large tracts of forest, and has historical records for both primates, although very little is known about them. To update our knowledge of the distributions of these primates and identify potential areas in which they are present, we modeled their geographic distributions by characterizing their ecological niches using the genetic algorithm for rule-set production (GARP), performed interviews and carried out field surveys. The predicted distributions, surveys and interviews indicate that the distributions of these primates are restricted to northeastern Oaxaca. The results suggest that spider monkeys occupy a wider area and elevational range than howler monkeys. Throughout that range there is a wide variety of suitable habitats for these primates. Most of the sites where monkeys were recorded in the field are not officially protected and there was evidence of hunting and habitat destruction. It is important to improve protection, economic alternatives and environmental education as we move towards an integral solution for the conservation of these species. Validation of the GARP model was done for A. geoffroyi, since we had obtained enough field data for this species; this validation indicated that the predicted distribution of the species was statistically better than expected by chance. Hence, ecological niche modeling is a useful approach when performing an initial assessment to identify distribution patterns, detecting suitable areas for future exploration, and for conservation planning. Our findings provide an improved basis for primate conservation and productive fieldwork in Oaxaca.     

The landward distribution of oceanic plankton and micronekton over the west Florida continental shelf as related to their vertical distribution

The landward distributions of 69 plankton and 92 micronektonspecies over the west Florida continental shelf were examinedin relation to their vertical distribution in the eastern Gulfof Mexico. Using linear and power-curve regressions, it wasfound that extent of landward occurrence is significantly correlatedwith bottom topography in terms of bottom depth and distancefrom the open Gulf. Epipelagic plankton species were distributedconsiderable distances across the shelf whereas the mesopdagicshrimp and fish species were not found landward of slope stations.Possible factors affecting landward distribution, such as currents,vertical migration patterns, and predation, are discussed.     

Fish Species and Community Distributions as Proxies for Seafloor Habitat Distributions: The Stellwagen Bank National Marine Sanctuary Example (Northwest Atlantic, Gulf Of Maine)

Defining the habitats of fishes and associated fauna on outer continental shelves is problematic given the paucity of data on the actual types and distributions of seafloor habitats. However many regions have good data on the distributions of fishes from resource surveys or catch statistics because of the economic importance of the fisheries. Fish distribution data (species or communities) have been used as a proxy for the distribution of habitats to develop precautionary conservation strategies for habitat protection (e.g., marine protected areas, fishing gear restrictions). In this study we assessed the relationships between the distributions of fish communities and species derived from trawl survey data with the spatial distribution of sediment types determined by sampling and acoustic reflectance derived from multibeam sonar surveys in Stellwagen Bank National Marine Sanctuary. Fish communities were correlated with reflectance values but all communities did not occur in unique sediment types. This suggests that use of community distributions as proxies for habitats should include the caveat that a greater number of communities within an area could indicate a greater range of habitat types. Single species distributions showed relationships between abundance and reflectance values. Trawl catches with low abundances had wide variations in reflectance values while those with high abundances had narrower ranges indicating habitat affinities. Significant non-random frequency-dependent relationships were observed for 17 of 20 species although only 12 of 20 species had significant relationships based on rank correlation. These results suggest that species distributions based on trawl survey data can be used as proxies for the distribution of seafloor habitats. Species with known habitat associations can be used to infer habitat requirements of co-occurring species and can be used to identify a range of habitat types.     

The geographic distribution of Loa loa in Africa: results of large-scale implementation of the Rapid Assessment Procedure for Loiasis (RAPLOA)

Background

Loiasis is a major obstacle to ivermectin treatment for onchocerciasis control and lymphatic filariasis elimination in central Africa. In communities with a high level of loiasis endemicity, there is a significant risk of severe adverse reactions to ivermectin treatment. Information on the geographic distribution of loiasis in Africa is urgently needed but available information is limited. The African Programme for Onchocerciasis Control (APOC) undertook large scale mapping of loiasis in 11 potentially endemic countries using a rapid assessment procedure for loiasis (RAPLOA) that uses a simple questionnaire on the history of eye worm.

Methodology/Principal Findings

RAPLOA surveys were done in a spatial sample of 4798 villages covering an area of 2500×3000 km centred on the heartland of loiasis in Africa. The surveys showed high risk levels of loiasis in 10 countries where an estimated 14.4 million people live in high risk areas. There was a strong spatial correlation among RAPLOA data, and kriging was used to produce spatially smoothed contour maps of the interpolated prevalence of eye worm and the predictive probability that the prevalence exceeds 40%.

Conclusion/Significance

The contour map of eye worm prevalence provides the first global map of loiasis based on actual survey data. It shows a clear distribution with two zones of hyper endemicity, large areas that are free of loiasis and several borderline or intermediate zones. The surveys detected several previously unknown hyperendemic foci, clarified the distribution of loiasis in the Central African Republic and large parts of the Republic of Congo and the Democratic Republic of Congo for which hardly any information was available, and confirmed known loiasis foci. The new maps of the prevalence of eye worm and the probability that the prevalence exceeds the risk threshold of 40% provide critical information for ivermectin treatment programs among millions of people in Africa.     

Jetski-based plankton towing as a new method of sampling larval fishes in shallow marine habitats

I tested jetski-based plankton towing as a new method of sampling larval fishes in a shallow marine environment in warm temperate South Africa. Larval fishes were collected by towing a stainless-steel ring net behind a three-man jetski. The sampling technique was designed and tested to overcome problematic sampling of shallow sandy beach surf zones and the adjacent, shallow nearshore immediately seaward of the surf zone (behind the breaker line) with the same type of equipment. The composition, density, stage of development, estuary association, and length frequency of larval fish catches obtained by the new sampling method in the surf zone and in the adjacent shallow nearshore were compared. The success of the technique was evaluated by determining the extent of replication of known trends observed in other surf studies in the same climatic region of South Africa using either a seine or pushnet. Preflexion and postflexion larval fishes were collected. Larvae of the family Sparidae dominated the catches. Trends in catch composition, estuary association, and length frequency of the larvae were similar to those found in other studies of warm temperate South African surf zones. Density of larvae varied depending on the type of equipment used, although these results are tentative given the subjectivity of calculation of the water volume sampled and the extent of nursery use by larvae in the habitats sampled in each study. Increased towing times are recommended. Jetski-based plankton towing is a useful alternative technique for sampling larval fishes in shallow habitats and can easily be applied in surf zones, shallow nearshore areas, and estuaries. The technique greatly increases sampling agility in previously problematic sampling areas.     

Relationships between patterns of habitat cover and the historical distribution of the Marsh Tit,Willow Tit and Lesser Spotted Woodpecker in Britain

Spatial analysis of remotely-sensed land cover data in conjunction with species distribution atlases can reveal large-scale relationships between animal taxa and their habitats. We investigated the historical distribution patterns of three declining woodland birds, the Marsh Tit (Poecile palustris), Willow Tit (Poecile montana) and Lesser Spotted Woodpecker (Dendrocopos minor), in relation to a parsimonious landscape metric for describing habitat availability in Britain. Bird distributions were derived from two field-based atlas surveys, conducted in 1968–1972 and 1988–1991, and used to classify areas of the landscape for each species as retained, lost or gained between atlas periods, or unoccupied in both. We used remotely-sensed land cover data from 1990 to compare percentage habitat cover between landscape areas classified by bird occupation, and regional summary data from national woodland inventories to investigate changes in habitat cover and bird distributions. Percentage habitat cover was a sufficient landscape metric to explain the distribution pattern of all three bird species; habitat cover was greatest in areas where each species was retained between atlas surveys, significantly less in areas from which species were lost, and least in areas that remained unoccupied. Reductions in Marsh Tit distribution were less in regions that showed greater increases in habitat cover, but there was no such relationship for other species. Results indicated that spatial studies could be used to infer aspects of the spatial ecology of species where field data is lacking: by comparing distribution patterns with the relatively well-studied Marsh Tit, we found support for the assumption that the Lesser Spotted Woodpecker occupies very large territories in Britain, and provided evidence that the spatial habitat requirements of the Marsh Tit could be used as a proxy for the data-poor Willow Tit. The results showed that the habitat cover required to retain each species in the landscape had increased over time, illustrating how spatial studies can be used to identify priorities for further research and suggest conservation measures for declining species, and these are discussed.     

The Impacts of Introduced Poeciliid Fish and Odonata on the Endemic Megalagrion (Odonata) Damselflies of Oahu Island, Hawaii

Since the beginning of this century there have been substantial declines in the distribution and abundance of native Megalagrion damselflies on the Hawaiian Island of Oahu. Native damselflies have also vanished from most low elevation areas on other Hawaiian Islands, although historically, lotic and wetland dwelling damselfly species were once common throughout the archipelago. It is hypothesized that poeciliid fish introduced for biological control have caused the decline of four stream-breeding damselfly species on Oahu, and the extinction or near-extinction of two other species in Hawaii. This study documents the presence of remnant Megalagrion populations in Oahu streams, wetlands and estuaries, and records the elevational distributions of introduced fish in each waterbody surveyed. The distributions of introduced Odonata are also recorded, because the seven species of damselflies and dragonflies introduced to Oahu since 1936 present another potential threat to native Hawaiian damselflies. Native damselfly and introduced poeciliid fish distributions were mutually exclusive on Oahu, and it is concluded that this is probably due to predation by the introduced fish. By contrast, even the rarest native Megalagrion damselflies were found in areas containing introduced damselflies and dragonflies.     

Co‐occurrence patterns of trees along macro‐climatic gradients and their potential influence on the present and future distribution of Fagus sylvatica L.

Aim During recent and future climate change, shifts in large‐scale species ranges are expected due to the hypothesized major role of climatic factors in regulating species distributions. The stress‐gradient hypothesis suggests that biotic interactions may act as major constraints on species distributions under more favourable growing conditions, while climatic constraints may dominate under unfavourable conditions. We tested this hypothesis for one focal tree species having three major competitors using broad‐scale environmental data. We evaluated the variation of species co‐occurrence patterns in climate space and estimated the influence of these patterns on the distribution of the focal species for current and projected future climates. Location Europe. Methods We used ICP Forest Level 1 data as well as climatic, topographic and edaphic variables. First, correlations between the relative abundance of European beech (Fagus sylvatica) and three major competitor species (Picea abies, Pinus sylvestris and Quercus robur) were analysed in environmental space, and then projected to geographic space. Second, a sensitivity analysis was performed using generalized additive models (GAM) to evaluate where and how much the predicted F. sylvatica distribution varied under current and future climates if potential competitor species were included or excluded. We evaluated if these areas coincide with current species co‐occurrence patterns. Results Correlation analyses supported the stress‐gradient hypothesis: towards favourable growing conditions of F. sylvatica, its abundance was strongly linked to the abundance of its competitors, while this link weakened towards unfavourable growing conditions, with stronger correlations in the south and at low elevations than in the north and at high elevations. The sensitivity analysis showed a potential spatial segregation of species with changing climate and a pronounced shift of zones where co‐occurrence patterns may play a major role. Main conclusions Our results demonstrate the importance of species co‐occurrence patterns for calibrating improved species distribution models for use in projections of climate effects. The correlation approach is able to localize European areas where inclusion of biotic predictors is effective. The climate‐induced spatial segregation of the major tree species could have ecological and economic consequences.     

Mapping the spawning grounds of North Sea cod (Gadus morhua) by direct and indirect means

Despite recent evidence for sub-stock structuring, North Sea cod are assessed as a single unit. As a consequence, knowledge of sub-stock trends is poor. In particular, there are no recent evaluations of which spawning grounds are active. Here we report results from the first ichthyoplankton survey to cover the whole North Sea. Also, this survey, conducted in 2004, was the first to make extensive use of DNA-based molecular methods to unambiguously identify early developmental stage cod eggs. We compare the findings from the plankton survey with estimated egg production inferred from the distribution of mature cod in contemporaneous trawl surveys. Results from both approaches were in general agreement and showed hot spots of egg production around the southern and eastern edges of the Dogger Bank, in the German Bight, the Moray Firth and to the east of the Shetlands. These areas broadly coincide with known spawning locations from the period 1940 to 1970. We were, however, unable to directly detect significant numbers of cod eggs at the historic spawning ground off Flamborough (northeast coast of England). The results demonstrate that most of the major spawning grounds of cod in the North Sea are still active but that some localized populations may have been reduced to the point where it is now difficult to detect the presence of eggs in the plankton.     

The effect of hydropower on fish stocks: comparison between cascade and non-cascade reservoirs

Spatial distributions of fish were studied in two types of reservoirs by means of hydroacoustics during the summer. Different patterns of fish distribution were found in non-cascade (Římov, Želivka) and cascade (Kamyk, Slapy, Štěchovice, Vrané) reservoirs. Maximum biomass and density of fish were observed in the tributary area of the non-cascade reservoir. The biomass declined towards the dam area. Average weight of fish showed the opposite trend—maximum average weight was observed in the dam area and declined towards the tributary area. In the cascade reservoirs fish distribution was found to be more complicated but the maximum biomass and density of fish were observed in the dam areas, whereas the tributary areas were nearly fishless. Poor ecohydrological conditions in the tributaries of cascade reservoirs are likely to be responsible for the low abundance of fish in these areas. This was evident in the example of Vrané reservoir which has two major inflows. Low biomass and density of fish were observed in the cold and low oxygen saturated inflowing cascade Vltava River while higher biomass and density were observed in the warm and well oxygen saturated Sázava River inflow. Average weights of fish followed the same trend as in non-cascade reservoirs—the maximum was in the dam area and it declined towards the tributary area. The vertical distribution of fish is driven by the fully developed stratification of temperature and oxygen during the summer season in non-cascade reservoirs. A significantly lower biomass of fish was observed below the thermocline in vertical surveys in both non-cascade and cascade reservoirs. Summer stratification in cascade reservoirs is weakly developed or is not developed at all due to hypolimnetic releases of cold water and short retention times. High transparency suggests lower primary production in cascade reservoirs. Guest editors: R. L. Welcomme & G. Marmulla Hydropower, Flood Control and Water Abstraction: Implications for Fish and Fisheries     

Organelle distribution in chick neuroepithelial cells: effects of colchicine and cytochalasin B

The intracellular distribution of mitochondria, cytoplasmic inclusions and rough endoplasmic reticulum cisternae of chick neuroepithelial cells was investigated at neurulation stages 6, 8, 10 and 12. These neuroepithelial cells were subdivided into three zones: apical, median and basal and the distribution percentages of distribution of these organelles were obtained. Mitochondrial distribution was related to the energy supply that mitochondria provide for apical microfilament contraction. Cytoplasmic inclusions were distributed preferentially in the apical zone of the neuroepithelial cells during the four stages. Rough endoplasmic reticulum cisternae were homogeneously distributed in the three zones at stages 10 and 12, but at stages 6 and 8 there are more elevated percentages of rough endoplasmic reticulum in the apical zones than in the other zones. Experimental treatments with colchicine and cytochalasin B does not modify the patterns of mitochondria and rough endoplasmic reticulum cisternae but alters the distribution of cytoplasmic inclusions. Finally, there is a correlation in the normal neurulating neuroepithelial cells between the distributions of mitochondria and rough endoplasmic reticulum distribution and between the distributions of mitochondria and cytoplasmic inclusions distribution. This relationship is retained in the treated neuroepithelial cells.     

Biogenic structure and its effect on the spatial heterogeneity of meiofauna in a salt marsh

Meiofauna samples collected around and between Spartina plants had either negative correlations with root biomass or no correlation. If, as predicted by earlier workers, meiofauna are attracted to micro-oxygenated zones around roots, there should have been a positive association between meiofauna and roots. Nematodes had higher densities around Uca pugnax (Smith) burrows than in controls, but copepods were less abundant, although the cause is unknown. Biogenic structures significantly affect meiofauna distribution and must be taken into account when quantifying meiofauna in areas with much structural heterogeneity.     

Validation of age readings from otoliths of juvenile roundnose grenadier, Coryphaenoides rupestris, a deep-water macrourid fish

Validation of the ageing of deep-water fish is difficult and there are only a few instances where the rings on the otoliths have been shown to be laid down annually. Roundnose grenadier have been fished commercially in the North Atlantic since the 1960s and the adult fish have frequently been aged by counting the rings in otoliths or scales. All the ageing was done on the assumption that the rings in the otoliths or scales were annual. Between 1975 and 1992, the Scottish Association for Marine Science carried out seasonal trawling surveys in the Rockall Trough using a fine-meshed trawl, and collected otoliths from a wide size range of roundnose grenadier. An examination of the growing edge of otoliths from juvenile fish from these collections suggests that the rings in the otoliths are laid down annually. The broader, opaque zones which represent the growth phase were dominant between September and March. The thinner, hyaline zones were dominant between April and July. The apparent delay in the growth phase compared with most shallow-water species is discussed in relation to the availability of mesopelagic prey.     

Food selection in juvenile three-spined sticklebacks studied in relation to size,abundance and biomass of prey

The food selection and diet of juvenile three-spined sticklebacks (Gasterosteus aculeatus L.) was studied in the littoral of a brackish-water sea area. The sampling stations were located in a eutrophicated area, where the plankton was characterized by rotifers, in a noneutrophicated zone, where copepods predominated, and in the intermediate zone, characterized by cladocerans. In all areas the fish preferred microcrustaceans to rotifers, but they did not feed strictly according to the size-selection hypothesis. Nor did they take the most abundant prey species. With some exceptions the species chiefly eaten by and also selected by fish, were those which had the largest biomass in the plankton.     

Factors influencing the spatial distribution of zooplankton and fish in Loch Ness, UK

• 1 The vertical and horizontal distribution of phytoplankton, zooplankton and fish in Loch Ness, Scotland, were monitored during one day‐time and one night‐time survey in July 1992. The vertical samples were collected at a site located at the northern end of the loch and the horizontal samples along a longitudinal transect.
• 2 The vertical distribution surveys demonstrated that the phytoplankton, the zooplankton and the fish were concentrated in the top 30 m of water above the seasonal thermocline. Within this layer, Cyclops stayed much closer to the surface than Eudiaptomus but both species moved towards the surface at night.
• 3 The most important factor influencing the horizontal distribution of the phytoplankton was the north‐ south gradient in productivity. The sub‐catchments surrounding the north basin contain a greater proportion of arable land than those to the south and the concentrations of nitrate‐nitrogen and phytoplankton chlorophyll increased systematically from south to north.
• 4 Zooplankton distribution patterns were influenced by wind‐induced water movements and the dispersion of allochthonous material from the main inflows. The highest concentrations of Cyclops were recorded in the north, where there was more phytoplankton, and the highest concentrations of Eudiaptomus in the south, where there were higher concentrations of non‐algal particulates.
• 5 There was no spatial correlation between total zooplankton and total fish abundance but the highest concentrations of small (1–5 cm) fish were recorded in the south where there was a large patch of Eudiaptomus. The number of Eudiaptomus at specific locations within this patch were, however, negatively correlated with the numbers of small fish. These results suggest that the fish were actively foraging within the patch and were depleting their zooplankton prey in the areas where they were most abundant.

     

The zoogeography, ecology and taxonomy of the genus Labeotropheus Ahl, 1927, of Lake Malawi (Pisces: Gichlidae)

Two species of Labeotropheus are currently recognized, but an earlier study of aquarium specimens caused doubt to be cast upon their specific distinctness. This doubt was removed by a field and laboratory study which showed that L. fuelleborni differed from L. trewavasae morphologically, in coloration, in geographic distribution, preferred habitat and ability to penetrate depth. The two species practise assortative mating.
Labeotropheus fuelleborni feeds predominantly from upper surfaces of rocks while L. trewavasae favours under surfaces. Although both species are specialized to crop epilithic algae they also feed secondarily on other food resources (e.g. plankton, insects) when these are available.
Gene flow between many populations of rock-frequenting cichlids is restricted by their sedentary nature and apparent inability to cross open water between rocky areas. Consequently, numerous geographic races, incipient species and species are found in the lake. This suggests that intralacustrine allopatric speciation may account for much of the species diversity of cichlids of rocky zones.
It is recommended that biologists working on cichlids from Lake Malawi should ascertain the precise location at which their specimens were caught and avoid using aquarium reared fish.     

Break zones in the distributions of alleles and species in alpine plants

Aim We test for the congruence between allele‐based range boundaries (break zones) in silicicolous alpine plants and species‐based break zones in the silicicolous flora of the European Alps. We also ask whether such break zones coincide with areas of large elevational variation. Location The European Alps. Methods On a regular grid laid across the entire Alps, we determined areas of allele‐ and species‐based break zones using respective clustering algorithms, identifying discontinuities in cluster distributions (breaks), and quantifying integrated break densities (break zones). Discontinuities were identified based on the intra‐specific genetic variation of 12 species and on the floristic distribution data from 239 species, respectively. Coincidence between the two types of break zones was tested using Spearman’s correlation. Break zone densities were also regressed on topographical complexity to test for the effect of elevational variation. Results We found that two main break zones in the distribution of alleles and species were significantly correlated. Furthermore, we show that these break zones are in topographically complex regions, characterized by massive elevational ranges owing to high mountains and deep glacial valleys. We detected a third break zone in the distribution of species in the eastern Alps, which is not correlated with topographic complexity, and which is also not evident from allelic distribution patterns. Species with the potential for long‐distance dispersal tended to show larger distribution ranges than short‐distance dispersers. Main conclusions We suggest that the history of Pleistocene glaciations is the main driver of the congruence between allele‐based and species‐based distribution patterns, because occurrences of both species and alleles were subject to the same processes (such as extinction, migration and drift) that shaped the distributions of species and genetic lineages. Large elevational ranges have had a profound effect as a dispersal barrier for alleles during post‐glacial immigration. Because plant species, unlike alleles, cannot spread via pollen but only via seed, and thus disperse less effectively, we conclude that species break zones are maintained over longer time spans and reflect more ancient patterns than allele break zones.